Wall clock time and date at job start Tue Mar 31 2020 14:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.69508 * 2 1 4 4 C 1.53192 * 109.58752 * 120.35516 * 2 1 3 5 5 C 1.53042 * 109.30866 * 174.42325 * 4 2 1 6 6 H 1.08993 * 109.46047 * 58.64343 * 5 4 2 7 7 N 1.46498 * 109.45645 * 178.61778 * 5 4 2 8 8 C 1.36936 * 119.99854 * 205.00101 * 7 5 4 9 9 H 1.08002 * 120.00088 * 359.97438 * 8 7 5 10 10 C 1.38815 * 120.00181 * 179.97438 * 8 7 5 11 11 N 1.31620 * 120.00075 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99950 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47263 * 0.02562 * 12 10 8 14 14 H 1.48507 * 109.46866 * 120.00724 * 12 10 8 15 15 H 1.48505 * 109.46963 * 240.00107 * 12 10 8 16 16 C 1.53044 * 109.53769 * 298.63539 * 5 4 2 17 17 C 1.52756 * 109.38175 * 61.24351 * 16 5 4 18 18 N 1.46921 * 109.58512 * 239.64878 * 2 1 3 19 19 C 1.34783 * 120.63357 * 6.57428 * 18 2 1 20 20 O 1.21277 * 119.99545 * 354.95295 * 19 18 2 21 21 C 1.50696 * 120.00135 * 174.66754 * 19 18 2 22 22 C 1.52997 * 109.47130 * 180.27938 * 21 19 18 23 23 C 1.50697 * 109.47149 * 180.02562 * 22 21 19 24 24 C 1.33394 * 125.20592 * 90.00042 * 23 22 21 25 25 C 1.38424 * 114.91988 * 179.97438 * 24 23 22 26 26 C 1.33391 * 114.92491 * 359.97438 * 25 24 23 27 27 S 1.75884 * 125.20101 * 269.69433 * 23 22 21 28 28 H 1.08999 * 109.46739 * 176.03013 * 1 2 3 29 29 H 1.08998 * 109.47299 * 296.02429 * 1 2 3 30 30 H 1.08997 * 109.47488 * 56.02848 * 1 2 3 31 31 H 1.08996 * 109.49542 * 294.37492 * 4 2 1 32 32 H 1.09005 * 109.49739 * 54.47197 * 4 2 1 33 33 H 0.97001 * 120.00424 * 24.99285 * 7 5 4 34 34 H 0.96996 * 120.00063 * 179.97438 * 11 10 8 35 35 H 1.09000 * 109.49553 * 181.31866 * 16 5 4 36 36 H 1.08998 * 109.49370 * 301.38268 * 16 5 4 37 37 H 1.09005 * 109.50734 * 185.70385 * 17 16 5 38 38 H 1.09000 * 109.43660 * 65.42641 * 17 16 5 39 39 H 1.09004 * 109.47518 * 300.28192 * 21 19 18 40 40 H 1.09004 * 109.46768 * 60.27841 * 21 19 18 41 41 H 1.08998 * 109.46885 * 300.00131 * 22 21 19 42 42 H 1.08996 * 109.47580 * 60.00057 * 22 21 19 43 43 H 1.07998 * 122.53633 * 359.97438 * 24 23 22 44 44 H 1.07998 * 122.53657 * 179.97438 * 25 24 23 45 45 H 1.08000 * 125.20260 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7294 1.2454 5 6 3.5676 -0.8479 1.1700 6 1 4.0061 0.1474 1.0990 7 7 4.0653 -1.5157 2.3752 8 6 5.3498 -1.2986 2.7973 9 1 5.9961 -0.6354 2.2414 10 6 5.8213 -1.9310 3.9395 11 7 5.0339 -2.7396 4.6167 12 14 7.5738 -1.6354 4.5148 13 1 8.2471 -0.6923 3.5862 14 1 7.5548 -1.0550 5.8816 15 1 8.3122 -2.9237 4.5343 16 6 3.9570 -1.6656 -0.0637 17 6 3.4644 -0.9517 -1.3211 18 7 2.0225 -0.6994 -1.1945 19 6 1.1673 -1.1070 -2.1532 20 8 -0.0281 -0.9797 -1.9933 21 6 1.6967 -1.7147 -3.4265 22 6 0.5267 -2.0817 -4.3414 23 6 1.0561 -2.6901 -5.6144 24 6 1.2814 -3.9903 -5.8098 25 6 1.7695 -4.3157 -7.0635 26 6 1.9401 -3.2800 -7.8866 27 16 1.4642 -1.7952 -7.0726 28 1 -0.3633 -1.0252 -0.0711 29 1 -0.3634 0.4509 0.9234 30 1 -0.3634 0.5742 -0.8522 31 1 1.7661 -0.1668 2.1368 32 1 1.6030 -1.7254 1.2913 33 1 3.4850 -2.1115 2.8743 34 1 5.3635 -3.1817 5.4146 35 1 5.0413 -1.7694 -0.1039 36 1 3.4988 -2.6529 -0.0051 37 1 3.6504 -1.5796 -2.1926 38 1 3.9928 -0.0048 -1.4311 39 1 2.3414 -0.9956 -3.9318 40 1 2.2687 -2.6121 -3.1903 41 1 -0.1179 -2.8009 -3.8361 42 1 -0.0453 -1.1845 -4.5776 43 1 1.0970 -4.7327 -5.0474 44 1 1.9952 -5.3313 -7.3534 45 1 2.3108 -3.3437 -8.8990 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044851663.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:07 Heat of formation + Delta-G solvation = 12.214176 kcal Electronic energy + Delta-G solvation = -24789.065116 eV Core-core repulsion = 21319.545951 eV Total energy + Delta-G solvation = -3469.519165 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.46146 -38.25391 -37.42229 -34.52798 -34.19742 -32.42071 -31.94454 -29.48061 -28.76612 -26.98896 -25.35724 -24.24115 -22.95991 -22.91974 -21.36755 -20.10265 -19.48682 -18.83120 -17.50830 -17.11378 -16.49466 -15.98146 -15.70849 -15.56387 -14.84408 -14.31153 -14.08374 -13.93109 -13.68730 -13.40153 -13.28897 -13.09394 -12.93650 -12.64128 -12.41779 -12.23671 -12.17909 -12.03306 -11.90893 -11.57644 -11.43250 -11.21670 -10.94254 -10.90505 -10.84956 -10.76327 -10.44850 -10.22692 -9.84815 -9.73217 -9.05831 -8.93947 -8.80767 -8.73014 -8.39735 -7.00487 -5.80245 -3.09532 0.73090 1.37486 1.74873 2.48499 2.68868 3.08476 3.40235 3.45773 3.48207 4.33947 4.54752 4.75011 4.78214 4.84750 4.88799 5.07886 5.16923 5.20152 5.31287 5.33669 5.36810 5.41473 5.49132 5.56467 5.58839 5.64531 5.82508 5.85306 5.91451 5.91966 6.01899 6.04823 6.13807 6.24706 6.26015 6.36607 6.44849 6.48612 6.53444 6.75598 6.89945 7.03346 7.55877 7.66190 8.27809 8.37971 9.49264 10.06839 10.41457 11.42369 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017246 B = 0.002567 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.153032 B =10906.126042 C =11945.189248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.146 3.854 3 H 0.069 0.931 4 C -0.135 4.135 5 C 0.179 3.821 6 H 0.047 0.953 7 N -0.724 5.724 8 C -0.239 4.239 9 H 0.071 0.929 10 C -0.014 4.014 11 N -0.932 5.932 12 Si 0.906 3.094 13 H -0.280 1.280 14 H -0.292 1.292 15 H -0.292 1.292 16 C -0.152 4.152 17 C 0.107 3.893 18 N -0.603 5.603 19 C 0.514 3.486 20 O -0.541 6.541 21 C -0.137 4.137 22 C -0.033 4.033 23 C -0.167 4.167 24 C -0.142 4.142 25 C -0.132 4.132 26 C -0.219 4.219 27 S 0.092 5.908 28 H 0.070 0.930 29 H 0.041 0.959 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.919 1.486 -23.507 24.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.043 3.957 3 H 0.087 0.913 4 C -0.174 4.174 5 C 0.069 3.931 6 H 0.065 0.935 7 N -0.364 5.364 8 C -0.370 4.370 9 H 0.089 0.911 10 C -0.210 4.210 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.205 1.205 14 H -0.219 1.219 15 H -0.219 1.219 16 C -0.193 4.193 17 C -0.016 4.016 18 N -0.336 5.336 19 C 0.303 3.697 20 O -0.420 6.420 21 C -0.178 4.178 22 C -0.072 4.072 23 C -0.285 4.285 24 C -0.172 4.172 25 C -0.162 4.162 26 C -0.354 4.354 27 S 0.355 5.645 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.217 0.783 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.109 0.891 42 H 0.100 0.900 43 H 0.158 0.842 44 H 0.157 0.843 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -8.390 3.139 -23.795 25.426 hybrid contribution 1.192 -1.760 0.878 2.300 sum -7.198 1.379 -22.918 24.061 Atomic orbital electron populations 1.22186 0.92843 1.03651 1.00294 1.21319 0.95405 0.94989 0.83984 0.91256 1.22297 0.97508 1.00965 0.96616 1.20158 0.90945 0.94922 0.87096 0.93494 1.42441 1.12911 1.54374 1.26700 1.19272 0.89075 1.22206 1.06467 0.91127 1.24757 0.98170 0.99854 0.98193 1.69672 1.35312 1.33561 1.19473 0.86139 0.84493 0.77284 0.78395 1.20545 1.21872 1.21886 1.22600 1.01730 1.00086 0.94874 1.21782 0.79574 1.00565 0.99706 1.48233 1.07719 1.57287 1.20356 1.20505 0.86460 0.78084 0.84680 1.90743 1.15594 1.55959 1.79681 1.21760 0.99400 1.02599 0.94034 1.19875 0.96502 1.01611 0.89240 1.24573 1.07667 0.96809 0.99423 1.20192 1.03235 0.95587 0.98175 1.20194 1.02273 1.00082 0.93663 1.25603 1.10028 0.95527 1.04290 1.84339 1.63550 1.10649 1.05951 0.91107 0.94024 0.91506 0.90696 0.91814 0.78264 0.93531 0.90589 0.92217 0.90424 0.91508 0.88938 0.88580 0.89091 0.89984 0.84170 0.84349 0.82056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 7.59 37.16 0.28 -1.60 16 2 C 0.15 2.09 3.49 -67.60 -0.24 1.85 16 3 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 4 C -0.13 -2.23 4.84 -26.61 -0.13 -2.36 16 5 C 0.18 3.37 2.73 -67.89 -0.19 3.19 16 6 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 7 N -0.72 -17.61 5.12 -53.38 -0.27 -17.89 16 8 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 9 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 10 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 11 N -0.93 -27.85 13.06 55.49 0.72 -27.13 16 12 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 14 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 15 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 16 C -0.15 -2.47 5.64 -26.83 -0.15 -2.62 16 17 C 0.11 1.33 6.30 -3.93 -0.02 1.30 16 18 N -0.60 -8.04 2.98 -165.48 -0.49 -8.53 16 19 C 0.51 6.71 7.60 -10.98 -0.08 6.62 16 20 O -0.54 -8.30 11.38 5.56 0.06 -8.24 16 21 C -0.14 -1.35 4.09 -27.89 -0.11 -1.47 16 22 C -0.03 -0.32 5.00 -27.89 -0.14 -0.46 16 23 C -0.17 -1.55 5.76 -36.00 -0.21 -1.76 16 24 C -0.14 -1.26 10.05 -41.21 -0.41 -1.67 16 25 C -0.13 -1.06 10.18 -41.21 -0.42 -1.48 16 26 C -0.22 -1.70 11.23 29.04 0.33 -1.38 16 27 S 0.09 0.78 23.33 -107.50 -2.51 -1.72 16 28 H 0.07 1.12 6.73 -51.93 -0.35 0.77 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.98 6.77 -51.93 -0.35 0.63 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.38 10.08 7.80 -40.82 -0.32 9.77 16 34 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.08 0.79 5.97 -51.93 -0.31 0.48 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 0.81 8.12 -51.93 -0.42 0.38 16 40 H 0.10 0.89 7.47 -51.93 -0.39 0.50 16 41 H 0.09 0.93 8.10 -51.93 -0.42 0.51 16 42 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 43 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 44 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 45 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 371.11 15.07 5.59 5.59 Total: -1.00 -30.65 371.11 -10.83 -41.49 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -7.17 Total: 8.34 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -1.74 Total: -8.89 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -0.04 Total: -53.55 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.06 Total: -8.24 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.51 Total: -1.72 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.65 -10.83 -41.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044851663.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.700 kcal (2) G-P(sol) polarization free energy of solvation -30.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds