Wall clock time and date at job start Tue Mar 31 2020 14:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.69508 * 2 1 4 4 C 1.53192 * 109.58752 * 120.35516 * 2 1 3 5 5 C 1.53042 * 109.30866 * 174.42325 * 4 2 1 6 6 H 1.08993 * 109.46047 * 58.64343 * 5 4 2 7 7 N 1.46498 * 109.45645 * 178.61778 * 5 4 2 8 8 C 1.36936 * 119.99854 * 205.00101 * 7 5 4 9 9 H 1.08002 * 120.00088 * 359.97438 * 8 7 5 10 10 C 1.38815 * 120.00181 * 179.97438 * 8 7 5 11 11 N 1.31620 * 120.00075 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99950 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47263 * 0.02562 * 12 10 8 14 14 H 1.48507 * 109.46866 * 120.00724 * 12 10 8 15 15 H 1.48505 * 109.46963 * 240.00107 * 12 10 8 16 16 C 1.53044 * 109.53769 * 298.63539 * 5 4 2 17 17 C 1.52756 * 109.38175 * 61.24351 * 16 5 4 18 18 N 1.46921 * 109.58512 * 239.64878 * 2 1 3 19 19 C 1.34783 * 120.63357 * 6.57428 * 18 2 1 20 20 O 1.21277 * 119.99545 * 354.95295 * 19 18 2 21 21 C 1.50696 * 120.00135 * 174.66754 * 19 18 2 22 22 C 1.52997 * 109.47130 * 180.27938 * 21 19 18 23 23 C 1.50697 * 109.47149 * 180.02562 * 22 21 19 24 24 C 1.33394 * 125.20592 * 90.00042 * 23 22 21 25 25 C 1.38424 * 114.91988 * 179.97438 * 24 23 22 26 26 C 1.33391 * 114.92491 * 359.97438 * 25 24 23 27 27 S 1.75884 * 125.20101 * 269.69433 * 23 22 21 28 28 H 1.08999 * 109.46739 * 176.03013 * 1 2 3 29 29 H 1.08998 * 109.47299 * 296.02429 * 1 2 3 30 30 H 1.08997 * 109.47488 * 56.02848 * 1 2 3 31 31 H 1.08996 * 109.49542 * 294.37492 * 4 2 1 32 32 H 1.09005 * 109.49739 * 54.47197 * 4 2 1 33 33 H 0.97001 * 120.00424 * 24.99285 * 7 5 4 34 34 H 0.96996 * 120.00063 * 179.97438 * 11 10 8 35 35 H 1.09000 * 109.49553 * 181.31866 * 16 5 4 36 36 H 1.08998 * 109.49370 * 301.38268 * 16 5 4 37 37 H 1.09005 * 109.50734 * 185.70385 * 17 16 5 38 38 H 1.09000 * 109.43660 * 65.42641 * 17 16 5 39 39 H 1.09004 * 109.47518 * 300.28192 * 21 19 18 40 40 H 1.09004 * 109.46768 * 60.27841 * 21 19 18 41 41 H 1.08998 * 109.46885 * 300.00131 * 22 21 19 42 42 H 1.08996 * 109.47580 * 60.00057 * 22 21 19 43 43 H 1.07998 * 122.53633 * 359.97438 * 24 23 22 44 44 H 1.07998 * 122.53657 * 179.97438 * 25 24 23 45 45 H 1.08000 * 125.20260 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7294 1.2454 5 6 3.5676 -0.8479 1.1700 6 1 4.0061 0.1474 1.0990 7 7 4.0653 -1.5157 2.3752 8 6 5.3498 -1.2986 2.7973 9 1 5.9961 -0.6354 2.2414 10 6 5.8213 -1.9310 3.9395 11 7 5.0339 -2.7396 4.6167 12 14 7.5738 -1.6354 4.5148 13 1 8.2471 -0.6923 3.5862 14 1 7.5548 -1.0550 5.8816 15 1 8.3122 -2.9237 4.5343 16 6 3.9570 -1.6656 -0.0637 17 6 3.4644 -0.9517 -1.3211 18 7 2.0225 -0.6994 -1.1945 19 6 1.1673 -1.1070 -2.1532 20 8 -0.0281 -0.9797 -1.9933 21 6 1.6967 -1.7147 -3.4265 22 6 0.5267 -2.0817 -4.3414 23 6 1.0561 -2.6901 -5.6144 24 6 1.2814 -3.9903 -5.8098 25 6 1.7695 -4.3157 -7.0635 26 6 1.9401 -3.2800 -7.8866 27 16 1.4642 -1.7952 -7.0726 28 1 -0.3633 -1.0252 -0.0711 29 1 -0.3634 0.4509 0.9234 30 1 -0.3634 0.5742 -0.8522 31 1 1.7661 -0.1668 2.1368 32 1 1.6030 -1.7254 1.2913 33 1 3.4850 -2.1115 2.8743 34 1 5.3635 -3.1817 5.4146 35 1 5.0413 -1.7694 -0.1039 36 1 3.4988 -2.6529 -0.0051 37 1 3.6504 -1.5796 -2.1926 38 1 3.9928 -0.0048 -1.4311 39 1 2.3414 -0.9956 -3.9318 40 1 2.2687 -2.6121 -3.1903 41 1 -0.1179 -2.8009 -3.8361 42 1 -0.0453 -1.1845 -4.5776 43 1 1.0970 -4.7327 -5.0474 44 1 1.9952 -5.3313 -7.3534 45 1 2.3108 -3.3437 -8.8990 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044851663.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:07 Heat of formation + Delta-G solvation = -4.319173 kcal Electronic energy + Delta-G solvation = -24789.782056 eV Core-core repulsion = 21319.545951 eV Total energy + Delta-G solvation = -3470.236105 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.56407 -39.04573 -38.56595 -36.16920 -35.07036 -33.78218 -33.41649 -31.05702 -29.65526 -28.28658 -26.25188 -25.82707 -24.38803 -23.74989 -22.47539 -21.52037 -20.10954 -19.97325 -19.09944 -18.24274 -17.40269 -17.06184 -16.78388 -16.61887 -16.27165 -15.57267 -15.45106 -15.20491 -15.03454 -14.61632 -14.59392 -14.00148 -13.86600 -13.54863 -13.45271 -13.36378 -13.17493 -12.98310 -12.98075 -12.88392 -12.79827 -12.61954 -12.57934 -12.10800 -12.03078 -11.95446 -11.91446 -11.69474 -11.56919 -11.33122 -10.89641 -10.07268 -9.55065 -9.51532 -9.36212 -9.00554 -7.93004 -5.21759 0.10097 0.74935 1.13374 1.48542 1.48935 1.58831 1.66891 1.84664 2.06157 2.57008 3.40208 3.46199 3.74931 3.85143 3.96426 4.06835 4.10175 4.10550 4.20766 4.28483 4.31632 4.36946 4.54727 4.60196 4.63750 4.68041 4.73138 4.74318 4.83595 4.87339 4.91700 5.02916 5.08343 5.10161 5.17716 5.27821 5.29337 5.43066 5.44343 5.51332 5.55858 5.62875 5.73484 6.28797 6.50957 7.23931 7.34644 8.10480 8.33338 9.30957 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017246 B = 0.002567 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.153032 B =10906.126042 C =11945.189248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.150 3.850 3 H 0.084 0.916 4 C -0.123 4.123 5 C 0.173 3.827 6 H 0.048 0.952 7 N -0.739 5.739 8 C -0.232 4.232 9 H 0.080 0.920 10 C -0.080 4.080 11 N -0.973 5.973 12 Si 0.970 3.030 13 H -0.262 1.262 14 H -0.297 1.297 15 H -0.296 1.296 16 C -0.142 4.142 17 C 0.115 3.885 18 N -0.606 5.606 19 C 0.511 3.489 20 O -0.567 6.567 21 C -0.129 4.129 22 C -0.026 4.026 23 C -0.182 4.182 24 C -0.147 4.147 25 C -0.143 4.143 26 C -0.217 4.217 27 S 0.086 5.914 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.369 0.631 34 H 0.249 0.751 35 H 0.067 0.933 36 H 0.044 0.956 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.111 0.889 40 H 0.107 0.893 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.146 0.854 44 H 0.157 0.843 45 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.886 2.177 -25.947 26.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.047 3.953 3 H 0.102 0.898 4 C -0.162 4.162 5 C 0.065 3.935 6 H 0.066 0.934 7 N -0.378 5.378 8 C -0.364 4.364 9 H 0.098 0.902 10 C -0.272 4.272 11 N -0.624 5.624 12 Si 0.800 3.200 13 H -0.187 1.187 14 H -0.225 1.225 15 H -0.223 1.223 16 C -0.182 4.182 17 C -0.007 4.007 18 N -0.339 5.339 19 C 0.301 3.699 20 O -0.447 6.447 21 C -0.169 4.169 22 C -0.065 4.065 23 C -0.299 4.299 24 C -0.177 4.177 25 C -0.173 4.173 26 C -0.352 4.352 27 S 0.349 5.651 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.201 0.799 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.126 0.874 38 H 0.103 0.897 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.164 0.836 44 H 0.174 0.826 45 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -7.355 3.864 -26.300 27.581 hybrid contribution 0.793 -1.968 1.561 2.634 sum -6.561 1.895 -24.739 25.665 Atomic orbital electron populations 1.22036 0.92737 1.02431 1.00613 1.21234 0.95361 0.95377 0.83338 0.89818 1.22149 0.95889 1.00367 0.97843 1.20416 0.92161 0.94741 0.86195 0.93363 1.42682 1.12129 1.54549 1.28421 1.19667 0.90015 1.20836 1.05839 0.90223 1.25560 1.02037 1.00585 0.98983 1.69833 1.37145 1.35375 1.20062 0.85107 0.80142 0.77050 0.77688 1.18651 1.22464 1.22338 1.22376 1.01089 0.99262 0.95513 1.21798 0.78869 1.01578 0.98498 1.48294 1.08227 1.57269 1.20104 1.21049 0.86073 0.77414 0.85356 1.90739 1.16805 1.56829 1.80317 1.21746 0.99638 1.03182 0.92311 1.19740 0.96263 1.01034 0.89509 1.24523 1.08699 0.97155 0.99509 1.20416 1.02837 0.95623 0.98818 1.20433 1.02326 1.01158 0.93368 1.25931 1.09226 0.94866 1.05154 1.84345 1.63675 1.11248 1.05856 0.93005 0.93197 0.91690 0.91454 0.93348 0.79932 0.94211 0.91469 0.93705 0.87359 0.89660 0.87059 0.87463 0.90088 0.90742 0.83594 0.82572 0.79952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.36 7.59 71.98 0.55 -2.81 16 2 C 0.15 4.10 3.49 44.98 0.16 4.26 16 3 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 4 C -0.12 -4.07 4.84 30.67 0.15 -3.92 16 5 C 0.17 6.42 2.73 45.02 0.12 6.54 16 6 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 7 N -0.74 -36.32 5.12 -322.81 -1.65 -37.98 16 8 C -0.23 -12.45 9.93 84.03 0.83 -11.61 16 9 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 10 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 11 N -0.97 -59.48 13.06 21.65 0.28 -59.20 16 12 Si 0.97 45.42 29.55 68.60 2.03 47.45 16 13 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 14 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 15 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 16 C -0.14 -4.42 5.64 30.53 0.17 -4.25 16 17 C 0.12 2.52 6.30 86.22 0.54 3.06 16 18 N -0.61 -14.95 2.98 -795.86 -2.37 -17.32 16 19 C 0.51 12.46 7.60 87.65 0.67 13.13 16 20 O -0.57 -16.97 11.38 -3.02 -0.03 -17.01 16 21 C -0.13 -2.23 4.09 29.85 0.12 -2.11 16 22 C -0.03 -0.47 5.00 29.85 0.15 -0.32 16 23 C -0.18 -3.07 5.76 24.59 0.14 -2.93 16 24 C -0.15 -2.34 10.05 21.22 0.21 -2.12 16 25 C -0.14 -1.97 10.18 21.22 0.22 -1.76 16 26 C -0.22 -2.85 11.23 66.72 0.75 -2.10 16 27 S 0.09 1.31 23.33 -56.49 -1.32 -0.01 16 28 H 0.05 1.63 6.73 -2.39 -0.02 1.62 16 29 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.06 1.84 6.77 -2.39 -0.02 1.82 16 31 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.37 20.01 7.80 -92.71 -0.72 19.28 16 34 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 35 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.11 1.77 5.97 -2.38 -0.01 1.75 16 38 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.11 1.56 8.12 -2.39 -0.02 1.54 16 40 H 0.11 1.67 7.47 -2.38 -0.02 1.65 16 41 H 0.08 1.61 8.10 -2.39 -0.02 1.59 16 42 H 0.07 1.45 8.10 -2.39 -0.02 1.43 16 43 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 44 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 45 H 0.18 1.51 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -66.53 371.11 2.44 -64.09 By element: Atomic # 1 Polarization: 30.71 SS G_CDS: 0.26 Total: 30.96 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: 5.25 Total: -10.98 kcal Atomic # 7 Polarization: -110.76 SS G_CDS: -3.74 Total: -114.50 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.03 Total: -17.01 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -1.32 Total: -0.01 kcal Total: -66.53 2.44 -64.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044851663.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.767 kcal (2) G-P(sol) polarization free energy of solvation -66.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds