Wall clock time and date at job start Tue Mar 31 2020 13:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47311 * 2 1 4 4 H 1.09001 * 109.99460 * 302.52706 * 3 2 1 5 5 C 1.54324 * 109.88292 * 181.43007 * 3 2 1 6 6 H 1.09004 * 110.71748 * 336.93221 * 5 3 2 7 7 N 1.46502 * 110.72156 * 100.02215 * 5 3 2 8 8 C 1.34777 * 120.00312 * 205.00276 * 7 5 3 9 9 O 1.21700 * 119.99714 * 0.02562 * 8 7 5 10 10 C 1.46580 * 119.99958 * 180.02562 * 8 7 5 11 11 S 1.75831 * 125.45706 * 0.02562 * 10 8 7 12 12 C 1.70626 * 91.56184 * 179.97438 * 11 10 8 13 13 C 1.50697 * 124.52119 * 179.97438 * 12 11 10 14 14 C 1.33822 * 110.95199 * 359.97438 * 12 11 10 15 15 C 1.36646 * 125.45784 * 179.72005 * 10 8 7 16 16 C 1.50704 * 123.35026 * 359.97438 * 15 10 8 17 17 C 1.55155 * 102.94243 * 218.38730 * 5 3 2 18 18 C 1.54692 * 101.67844 * 35.33612 * 17 5 3 19 19 N 1.47021 * 109.88653 * 63.62284 * 3 2 1 20 20 C 1.36936 * 125.64582 * 298.32300 * 19 3 2 21 21 H 1.08003 * 120.00031 * 336.17583 * 20 19 3 22 22 C 1.38815 * 120.00267 * 156.17440 * 20 19 3 23 23 N 1.31615 * 120.00515 * 160.43322 * 22 20 19 24 24 Si 1.86801 * 119.99602 * 340.43509 * 22 20 19 25 25 H 1.48500 * 109.47240 * 89.63791 * 24 22 20 26 26 H 1.48499 * 109.47277 * 329.63834 * 24 22 20 27 27 H 1.48499 * 109.46919 * 209.63944 * 24 22 20 28 28 H 1.08997 * 109.47585 * 172.66881 * 1 2 3 29 29 H 1.09003 * 109.47529 * 292.67742 * 1 2 3 30 30 H 1.09004 * 109.46713 * 52.67141 * 1 2 3 31 31 H 1.08996 * 109.47101 * 239.99210 * 2 1 3 32 32 H 1.09005 * 109.46464 * 119.99956 * 2 1 3 33 33 H 0.97003 * 119.99778 * 25.00417 * 7 5 3 34 34 H 1.08998 * 109.46988 * 0.02562 * 13 12 11 35 35 H 1.09000 * 109.47217 * 120.02760 * 13 12 11 36 36 H 1.09004 * 109.46873 * 240.02217 * 13 12 11 37 37 H 1.08000 * 122.44357 * 179.97438 * 14 12 11 38 38 H 1.09000 * 109.46319 * 90.00339 * 16 15 10 39 39 H 1.08999 * 109.47541 * 209.99944 * 16 15 10 40 40 H 1.09001 * 109.47278 * 330.01122 * 16 15 10 41 41 H 1.09006 * 111.00201 * 153.57701 * 17 5 3 42 42 H 1.08996 * 111.00415 * 277.42327 * 17 5 3 43 43 H 1.08994 * 110.39264 * 204.36084 * 18 17 5 44 44 H 1.08999 * 110.23326 * 82.10980 * 18 17 5 45 45 H 0.96995 * 120.00209 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6450 1.9774 -0.8636 5 6 3.5828 1.4536 -0.0362 6 1 3.9843 0.5151 0.3461 7 7 4.0676 1.7071 -1.3953 8 6 5.2902 1.2776 -1.7658 9 8 5.9913 0.6788 -0.9714 10 6 5.7753 1.5317 -3.1254 11 16 4.8867 2.3794 -4.3837 12 6 6.1705 2.1799 -5.4898 13 6 6.1596 2.6823 -6.9105 14 6 7.1883 1.5176 -4.9272 15 6 6.9930 1.1529 -3.6162 16 6 8.0189 0.4072 -2.8022 17 6 3.9439 2.6335 0.9044 18 6 2.8353 2.5287 1.9781 19 7 1.6276 2.1187 1.2386 20 6 0.3357 2.3369 1.6366 21 1 -0.4572 2.3680 0.9039 22 6 0.0449 2.5180 2.9818 23 7 -1.0817 3.0967 3.3396 24 14 1.2529 1.9404 4.2844 25 1 2.2100 3.0335 4.5915 26 1 1.9970 0.7583 3.7801 27 1 0.5122 1.5701 5.5170 28 1 -0.3634 -1.0192 -0.1311 29 1 -0.3634 0.3962 0.9482 30 1 -0.3633 0.6232 -0.8172 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8901 33 1 3.5086 2.1840 -2.0285 34 1 5.2136 3.1853 -7.1107 35 1 6.9816 3.3835 -7.0542 36 1 6.2758 1.8413 -7.5941 37 1 8.0976 1.2891 -5.4631 38 1 7.8633 -0.6656 -2.9163 39 1 9.0185 0.6683 -3.1498 40 1 7.9169 0.6794 -1.7516 41 1 4.9312 2.4940 1.3448 42 1 3.8840 3.5857 0.3774 43 1 2.6773 3.4951 2.4566 44 1 3.0995 1.7755 2.7204 45 1 -1.2846 3.2236 4.2796 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087587253.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:18 Heat of formation + Delta-G solvation = 11.482964 kcal Electronic energy + Delta-G solvation = -25349.277289 eV Core-core repulsion = 21879.726416 eV Total energy + Delta-G solvation = -3469.550873 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.03808 -38.65994 -37.63609 -34.25075 -32.93972 -32.51564 -32.12936 -29.68752 -28.54049 -27.75553 -26.78384 -24.29526 -22.32482 -22.18197 -21.84033 -20.47434 -19.90998 -18.69390 -17.84428 -16.97196 -16.19503 -16.01390 -15.17069 -15.09815 -14.83660 -14.44499 -14.21595 -13.76851 -13.59461 -13.36137 -13.23913 -13.10795 -13.09677 -12.81678 -12.46771 -12.18795 -12.09609 -11.89236 -11.87094 -11.80442 -11.39125 -11.10924 -11.04605 -10.91754 -10.66008 -10.40551 -10.26781 -10.07889 -9.87430 -9.74331 -9.32899 -8.98968 -8.73956 -8.62810 -8.58230 -7.01757 -5.96245 -3.30043 0.32636 1.25860 1.66091 2.17173 3.18176 3.19248 3.36116 3.49323 3.51774 4.40392 4.54015 4.71369 4.82629 4.97454 4.99610 5.10934 5.13806 5.18353 5.21300 5.30005 5.39468 5.49435 5.60309 5.61396 5.76032 5.80536 5.85071 5.90029 5.94324 6.10089 6.14483 6.19444 6.28757 6.36938 6.42721 6.54930 6.60629 6.63691 6.75986 6.76292 7.02979 7.36887 7.54249 7.74944 8.22191 8.30494 8.81427 9.66422 10.16542 11.19239 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022027 B = 0.003240 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.852393 B = 8640.864038 C = 9120.633103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C 0.158 3.842 4 H 0.045 0.955 5 C 0.135 3.865 6 H 0.100 0.900 7 N -0.712 5.712 8 C 0.591 3.409 9 O -0.529 6.529 10 C -0.274 4.274 11 S 0.198 5.802 12 C -0.194 4.194 13 C -0.085 4.085 14 C -0.156 4.156 15 C -0.018 4.018 16 C -0.105 4.105 17 C -0.141 4.141 18 C 0.111 3.889 19 N -0.599 5.599 20 C -0.233 4.233 21 H 0.095 0.905 22 C 0.025 3.975 23 N -0.909 5.909 24 Si 0.881 3.119 25 H -0.287 1.287 26 H -0.271 1.271 27 H -0.303 1.303 28 H 0.030 0.970 29 H 0.096 0.904 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.056 0.944 33 H 0.396 0.604 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.142 0.858 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.094 0.906 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.030 0.970 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.442 -2.092 -19.109 24.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C 0.051 3.949 4 H 0.063 0.937 5 C 0.030 3.970 6 H 0.118 0.882 7 N -0.362 5.362 8 C 0.378 3.622 9 O -0.408 6.408 10 C -0.394 4.394 11 S 0.466 5.534 12 C -0.314 4.314 13 C -0.143 4.143 14 C -0.188 4.188 15 C -0.033 4.033 16 C -0.164 4.164 17 C -0.180 4.180 18 C -0.015 4.015 19 N -0.325 5.325 20 C -0.360 4.360 21 H 0.113 0.887 22 C -0.174 4.174 23 N -0.552 5.552 24 Si 0.711 3.289 25 H -0.214 1.214 26 H -0.196 1.196 27 H -0.231 1.231 28 H 0.049 0.951 29 H 0.114 0.886 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.231 0.769 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.160 0.840 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.112 0.888 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.047 0.953 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.247 -1.747 -18.451 23.377 hybrid contribution 1.752 -0.740 0.482 1.962 sum 15.999 -2.487 -17.969 24.187 Atomic orbital electron populations 1.21958 0.95199 0.99176 1.04685 1.21892 0.97415 0.97131 0.99957 1.21185 0.89590 0.92551 0.91603 0.93724 1.22160 0.95095 0.99400 0.80321 0.88209 1.45916 1.16831 1.58509 1.14920 1.16885 0.81532 0.78784 0.85022 1.90767 1.55729 1.41717 1.52575 1.24406 1.01068 1.14718 0.99194 1.83066 1.17065 1.52573 1.00650 1.24183 0.99498 1.05618 1.02100 1.20386 1.03214 1.01465 0.89247 1.19803 1.00770 1.03502 0.94679 1.19465 0.93831 0.96257 0.93717 1.20735 0.95050 0.99314 1.01256 1.23103 0.98976 0.98181 0.97747 1.21944 0.86590 0.98859 0.94069 1.44736 1.01816 1.64690 1.21250 1.18567 0.82221 1.43138 0.92107 0.88739 1.25100 0.95977 0.99514 0.96850 1.69795 1.24992 1.43694 1.16749 0.86977 0.80502 0.79837 0.81596 1.21389 1.19616 1.23103 0.95076 0.88578 0.93978 0.93889 0.92500 0.76933 0.91205 0.90274 0.90270 0.84002 0.90736 0.91839 0.88759 0.91206 0.90999 0.92122 0.95262 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.86 37.16 0.33 -2.59 16 2 C -0.12 -2.29 5.48 -26.73 -0.15 -2.44 16 3 C 0.16 2.99 3.03 -66.96 -0.20 2.79 16 4 H 0.05 0.83 7.72 -51.93 -0.40 0.43 16 5 C 0.13 2.30 2.85 -66.10 -0.19 2.11 16 6 H 0.10 1.82 7.25 -51.93 -0.38 1.45 16 7 N -0.71 -10.35 5.17 -53.36 -0.28 -10.63 16 8 C 0.59 8.93 7.78 -12.90 -0.10 8.82 16 9 O -0.53 -9.34 13.89 5.19 0.07 -9.27 16 10 C -0.27 -3.46 6.45 -36.79 -0.24 -3.70 16 11 S 0.20 1.93 22.08 -107.50 -2.37 -0.44 16 12 C -0.19 -1.70 6.28 -35.86 -0.23 -1.92 16 13 C -0.08 -0.48 10.33 36.00 0.37 -0.11 16 14 C -0.16 -1.47 9.82 -41.41 -0.41 -1.88 16 15 C -0.02 -0.21 5.90 -105.48 -0.62 -0.83 16 16 C -0.11 -1.13 9.55 36.01 0.34 -0.79 16 17 C -0.14 -2.48 6.76 -24.70 -0.17 -2.65 16 18 C 0.11 2.38 4.76 -2.65 -0.01 2.36 16 19 N -0.60 -13.73 2.87 -162.72 -0.47 -14.19 16 20 C -0.23 -6.20 7.74 -15.06 -0.12 -6.32 16 21 H 0.10 2.66 7.22 -52.48 -0.38 2.28 16 22 C 0.02 0.69 5.45 -17.43 -0.10 0.60 16 23 N -0.91 -27.27 13.97 55.49 0.78 -26.50 16 24 Si 0.88 22.31 24.40 -169.99 -4.15 18.16 16 25 H -0.29 -7.12 6.93 56.52 0.39 -6.72 16 26 H -0.27 -6.75 6.37 56.52 0.36 -6.39 16 27 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.10 2.17 5.42 -51.93 -0.28 1.89 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.40 5.03 7.48 -40.82 -0.31 4.72 16 34 H 0.07 0.35 8.11 -51.93 -0.42 -0.07 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 1.23 6.02 -51.93 -0.31 0.92 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.06 1.37 7.23 -51.93 -0.38 1.00 16 44 H 0.03 0.67 5.22 -51.93 -0.27 0.39 16 45 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 363.29 15.07 5.47 5.47 Total: -1.00 -30.97 363.29 -9.38 -40.35 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -6.96 Total: 3.58 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -1.48 Total: -6.53 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: 0.03 Total: -51.32 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.07 Total: -9.27 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.15 Total: 18.16 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -2.37 Total: -0.44 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.97 -9.38 -40.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087587253.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.829 kcal (2) G-P(sol) polarization free energy of solvation -30.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds