Wall clock time and date at job start Tue Mar 31 2020 13:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46800 * 2 1 4 4 H 1.09001 * 109.99882 * 56.17832 * 3 2 1 5 5 C 1.54315 * 109.88563 * 295.07712 * 3 2 1 6 6 H 1.09005 * 110.71861 * 336.93387 * 5 3 2 7 7 N 1.46500 * 110.72250 * 100.02640 * 5 3 2 8 8 C 1.34774 * 120.00257 * 202.56259 * 7 5 3 9 9 O 1.21631 * 120.00415 * 359.97438 * 8 7 5 10 10 C 1.47199 * 119.99873 * 180.27556 * 8 7 5 11 11 C 1.44430 * 123.46014 * 359.74887 * 10 8 7 12 12 C 1.32770 * 113.08009 * 180.02562 * 11 10 8 13 13 C 1.50700 * 124.70588 * 180.02562 * 12 11 10 14 14 S 1.75504 * 110.57767 * 359.97438 * 12 11 10 15 15 C 1.36001 * 123.45782 * 179.45572 * 10 8 7 16 16 C 1.50695 * 124.59666 * 359.97265 * 15 10 8 17 17 C 1.55152 * 103.10705 * 218.48015 * 5 3 2 18 18 C 1.54912 * 101.57887 * 35.41192 * 17 5 3 19 19 N 1.47318 * 110.06181 * 177.34529 * 3 2 1 20 20 C 1.36942 * 125.61545 * 298.25189 * 19 3 2 21 21 H 1.07999 * 119.99834 * 347.98130 * 20 19 3 22 22 C 1.38814 * 119.99832 * 167.98657 * 20 19 3 23 23 N 1.31613 * 120.00209 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99800 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47049 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46854 * 120.00083 * 24 22 20 27 27 H 1.48503 * 109.46762 * 239.99844 * 24 22 20 28 28 H 1.09004 * 109.46648 * 305.49858 * 1 2 3 29 29 H 1.08998 * 109.47143 * 65.49563 * 1 2 3 30 30 H 1.08997 * 109.46794 * 185.50052 * 1 2 3 31 31 H 1.08996 * 109.46977 * 240.00520 * 2 1 3 32 32 H 1.08999 * 109.46966 * 119.99804 * 2 1 3 33 33 H 0.97005 * 119.99402 * 22.56336 * 7 5 3 34 34 H 1.07996 * 123.45493 * 0.03748 * 11 10 8 35 35 H 1.08994 * 109.47437 * 90.00222 * 13 12 11 36 36 H 1.09010 * 109.46617 * 210.00106 * 13 12 11 37 37 H 1.08994 * 109.47296 * 329.99403 * 13 12 11 38 38 H 1.09002 * 109.46974 * 89.99826 * 16 15 10 39 39 H 1.09000 * 109.47433 * 210.00649 * 16 15 10 40 40 H 1.09003 * 109.47395 * 330.00314 * 16 15 10 41 41 H 1.09003 * 111.00897 * 153.48516 * 17 5 3 42 42 H 1.09003 * 111.00675 * 277.34146 * 17 5 3 43 43 H 1.09007 * 110.36789 * 81.83371 * 18 17 5 44 44 H 1.09003 * 110.36510 * 204.15135 * 18 17 5 45 45 H 0.97001 * 120.00458 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6267 1.9841 0.8510 5 6 1.6350 2.1425 -1.3144 6 1 1.4535 1.4102 -2.1011 7 7 0.4540 2.9849 -1.1105 8 6 -0.3278 3.3143 -2.1578 9 8 -0.0525 2.9126 -3.2723 10 6 -1.5110 4.1658 -1.9538 11 6 -1.9063 4.6845 -0.6651 12 6 -3.0051 5.4279 -0.7180 13 6 -3.6465 6.0968 0.4703 14 16 -3.6057 5.5247 -2.3642 15 6 -2.3411 4.5496 -2.9605 16 6 -2.1681 4.1629 -4.4066 17 6 2.8772 3.0101 -1.6481 18 6 4.0319 2.1025 -1.1556 19 7 3.5117 1.4584 0.0641 20 6 4.2708 0.9552 1.0868 21 1 3.8035 0.6769 2.0198 22 6 5.6410 0.8029 0.9241 23 7 6.2104 1.1417 -0.2130 24 14 6.6766 0.1172 2.3194 25 1 5.8034 -0.1845 3.4820 26 1 7.3499 -1.1280 1.8704 27 1 7.6997 1.1183 2.7147 28 1 -0.3633 0.5968 0.8367 29 1 -0.3633 0.4262 -0.9351 30 1 -0.3633 -1.0229 0.0985 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.2346 3.3056 -0.2217 34 1 -1.3637 4.4878 0.2477 35 1 -3.2271 7.0950 0.5956 36 1 -4.7218 6.1722 0.3081 37 1 -3.4548 5.5070 1.3666 38 1 -2.7016 3.2323 -4.6002 39 1 -2.5689 4.9510 -5.0440 40 1 -1.1083 4.0255 -4.6218 41 1 2.9516 3.1898 -2.7207 42 1 2.8568 3.9502 -1.0966 43 1 4.2717 1.3515 -1.9085 44 1 4.9122 2.7015 -0.9224 45 1 7.1679 1.0357 -0.3266 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087645528.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:26 Heat of formation + Delta-G solvation = 3.983992 kcal Electronic energy + Delta-G solvation = -25444.580458 eV Core-core repulsion = 21974.704405 eV Total energy + Delta-G solvation = -3469.876053 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.99088 -38.09734 -36.91539 -34.10858 -33.11475 -32.73990 -31.70496 -29.64697 -28.86113 -26.76297 -25.46575 -24.49950 -23.45487 -22.04128 -20.84933 -20.20278 -19.78224 -18.84889 -17.32947 -16.80783 -16.44258 -15.73617 -14.99047 -14.76618 -14.42391 -14.10867 -13.94776 -13.83890 -13.72540 -13.37542 -13.35270 -13.18245 -13.01376 -12.67768 -12.16811 -11.99796 -11.91706 -11.71797 -11.70828 -11.61870 -11.14375 -11.10998 -10.89286 -10.83144 -10.59663 -10.42332 -10.24758 -10.04855 -9.72263 -9.63732 -9.48557 -8.78683 -8.72388 -8.60471 -8.40698 -6.82402 -5.73636 -3.10152 0.68092 1.29132 1.72006 1.88273 3.38226 3.43584 3.46536 3.48725 3.52589 4.43800 4.48492 4.73387 4.91168 5.05188 5.14830 5.23243 5.31427 5.36419 5.43385 5.53778 5.54621 5.55812 5.59212 5.75856 5.81207 5.81994 5.86078 5.90104 6.07470 6.15532 6.17877 6.24901 6.36441 6.43131 6.48183 6.59869 6.70850 6.76467 6.95442 7.16510 7.54222 7.60426 7.78755 7.81035 8.26863 8.46691 9.18696 9.79534 10.46723 11.37253 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021388 B = 0.003007 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.860704 B = 9310.085763 C = 9663.899614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.131 4.131 3 C 0.161 3.839 4 H 0.035 0.965 5 C 0.139 3.861 6 H 0.093 0.907 7 N -0.707 5.707 8 C 0.578 3.422 9 O -0.540 6.540 10 C -0.166 4.166 11 C -0.109 4.109 12 C -0.203 4.203 13 C -0.081 4.081 14 S 0.165 5.835 15 C -0.142 4.142 16 C -0.094 4.094 17 C -0.156 4.156 18 C 0.173 3.827 19 N -0.595 5.595 20 C -0.226 4.226 21 H 0.076 0.924 22 C -0.005 4.005 23 N -0.917 5.917 24 Si 0.910 3.090 25 H -0.280 1.280 26 H -0.290 1.290 27 H -0.291 1.291 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.396 0.604 34 H 0.147 0.853 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.106 0.894 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.025 0.975 44 H 0.080 0.920 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.831 9.323 -2.291 22.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C 0.053 3.947 4 H 0.052 0.948 5 C 0.035 3.965 6 H 0.111 0.889 7 N -0.356 5.356 8 C 0.363 3.637 9 O -0.419 6.419 10 C -0.182 4.182 11 C -0.137 4.137 12 C -0.319 4.319 13 C -0.140 4.140 14 S 0.431 5.569 15 C -0.262 4.262 16 C -0.153 4.153 17 C -0.196 4.196 18 C 0.047 3.953 19 N -0.320 5.320 20 C -0.354 4.354 21 H 0.094 0.906 22 C -0.202 4.202 23 N -0.564 5.564 24 Si 0.741 3.259 25 H -0.205 1.205 26 H -0.217 1.217 27 H -0.218 1.218 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.231 0.769 34 H 0.165 0.835 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.125 0.875 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.043 0.957 44 H 0.098 0.902 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -21.600 9.695 -3.682 23.960 hybrid contribution 1.760 -1.029 1.840 2.747 sum -19.839 8.666 -1.841 21.728 Atomic orbital electron populations 1.21765 0.97203 1.00463 1.00977 1.22006 0.93611 0.99127 1.02375 1.21120 0.86988 0.93333 0.93291 0.94763 1.22110 0.83391 0.92369 0.98675 0.88858 1.45936 1.27349 1.52128 1.10230 1.17500 0.81698 0.79774 0.84688 1.90716 1.72982 1.54788 1.23451 1.20184 0.99540 1.05819 0.92705 1.21146 0.96716 0.98514 0.97370 1.24226 1.01704 1.07142 0.98865 1.20334 0.99902 1.00213 0.93521 1.82941 1.26340 1.48426 0.99233 1.24451 0.98975 1.01757 1.00980 1.20635 1.06142 1.01018 0.87474 1.23425 0.96732 0.99060 1.00336 1.21490 0.93379 0.93008 0.87389 1.44547 0.98313 1.68554 1.20549 1.19007 0.89087 1.35495 0.91809 0.90603 1.24870 0.97006 1.01201 0.97130 1.69933 1.10025 1.52795 1.23650 0.86074 0.80323 0.78424 0.81099 1.20482 1.21727 1.21774 0.93497 0.93269 0.93698 0.92332 0.91763 0.76935 0.83530 0.90700 0.91359 0.90377 0.90336 0.91807 0.87542 0.91902 0.92094 0.95697 0.90221 0.93706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.57 37.16 0.36 -1.85 16 2 C -0.13 -2.45 5.42 -26.73 -0.14 -2.60 16 3 C 0.16 3.19 2.95 -66.79 -0.20 3.00 16 4 H 0.03 0.67 7.70 -51.93 -0.40 0.27 16 5 C 0.14 2.54 1.95 -66.10 -0.13 2.41 16 6 H 0.09 1.85 7.25 -51.93 -0.38 1.47 16 7 N -0.71 -10.68 4.90 -53.18 -0.26 -10.94 16 8 C 0.58 9.07 7.79 -12.62 -0.10 8.97 16 9 O -0.54 -9.97 13.75 5.25 0.07 -9.90 16 10 C -0.17 -2.18 5.98 -104.63 -0.63 -2.80 16 11 C -0.11 -1.16 9.75 -39.02 -0.38 -1.54 16 12 C -0.20 -1.89 6.44 -36.18 -0.23 -2.12 16 13 C -0.08 -0.52 10.35 36.01 0.37 -0.15 16 14 S 0.16 1.51 22.95 -107.50 -2.47 -0.95 16 15 C -0.14 -1.69 6.34 -35.11 -0.22 -1.91 16 16 C -0.09 -1.06 9.60 36.00 0.35 -0.72 16 17 C -0.16 -3.09 6.77 -24.58 -0.17 -3.26 16 18 C 0.17 4.19 5.46 -2.53 -0.01 4.17 16 19 N -0.59 -14.69 3.14 -162.35 -0.51 -15.20 16 20 C -0.23 -6.09 9.80 -15.06 -0.15 -6.24 16 21 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 22 C -0.01 -0.15 5.47 -17.43 -0.10 -0.24 16 23 N -0.92 -26.58 10.47 55.49 0.58 -26.00 16 24 Si 0.91 21.80 29.55 -169.99 -5.02 16.77 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.75 7.38 -51.93 -0.38 0.37 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 32 H 0.06 1.27 7.93 -51.93 -0.41 0.86 16 33 H 0.40 5.12 6.88 -40.82 -0.28 4.84 16 34 H 0.15 1.32 7.10 -52.49 -0.37 0.95 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.37 8.14 -51.92 -0.42 -0.06 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.11 1.45 5.94 -51.93 -0.31 1.14 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.02 0.66 8.12 -51.93 -0.42 0.24 16 44 H 0.08 2.15 6.73 -51.93 -0.35 1.80 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 372.24 15.07 5.61 5.61 Total: -1.00 -30.83 372.24 -10.45 -41.28 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -7.07 Total: 4.21 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -1.38 Total: -4.89 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: -0.19 Total: -52.14 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.07 Total: -9.90 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.47 Total: -0.95 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.83 -10.45 -41.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087645528.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.267 kcal (2) G-P(sol) polarization free energy of solvation -30.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds