Wall clock time and date at job start Tue Mar 31 2020 13:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47499 * 2 1 4 4 H 1.09001 * 109.99359 * 56.19487 * 3 2 1 5 5 C 1.54329 * 109.88146 * 295.10436 * 3 2 1 6 6 H 1.09000 * 110.87130 * 336.82404 * 5 3 2 7 7 N 1.46503 * 110.71799 * 100.01988 * 5 3 2 8 8 C 1.34778 * 119.99936 * 199.97318 * 7 5 3 9 9 O 1.21283 * 120.00090 * 0.02562 * 8 7 5 10 10 C 1.50692 * 120.00024 * 180.02562 * 8 7 5 11 11 H 1.09000 * 109.47181 * 60.00449 * 10 8 7 12 12 C 1.53005 * 109.47330 * 299.99987 * 10 8 7 13 13 C 1.50704 * 109.47284 * 180.02562 * 10 8 7 14 14 C 1.33390 * 125.20540 * 240.00121 * 13 10 8 15 15 C 1.38424 * 114.92135 * 180.24431 * 14 13 10 16 16 C 1.33388 * 114.91869 * 359.49483 * 15 14 13 17 17 S 1.75882 * 109.59637 * 0.47662 * 16 15 14 18 18 C 1.55150 * 102.94334 * 218.38683 * 5 3 2 19 19 C 1.54910 * 101.58194 * 35.50214 * 18 5 3 20 20 N 1.47013 * 109.88486 * 177.29419 * 3 2 1 21 21 C 1.36934 * 125.65228 * 298.31863 * 20 3 2 22 22 H 1.08000 * 119.99960 * 348.12467 * 21 20 3 23 23 C 1.38816 * 120.00396 * 168.12096 * 21 20 3 24 24 N 1.31620 * 119.99720 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00075 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47476 * 60.00164 * 25 23 21 27 27 H 1.48500 * 109.46844 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46995 * 299.99865 * 25 23 21 29 29 H 1.09002 * 109.47212 * 305.49840 * 1 2 3 30 30 H 1.08997 * 109.46992 * 65.50005 * 1 2 3 31 31 H 1.09001 * 109.46946 * 185.49788 * 1 2 3 32 32 H 1.08999 * 109.47253 * 240.00055 * 2 1 3 33 33 H 1.08997 * 109.47296 * 119.99602 * 2 1 3 34 34 H 0.96998 * 120.00102 * 19.98041 * 7 5 3 35 35 H 1.09001 * 109.47216 * 179.97438 * 12 10 8 36 36 H 1.09000 * 109.47366 * 300.00349 * 12 10 8 37 37 H 1.09001 * 109.46679 * 60.00519 * 12 10 8 38 38 H 1.08001 * 122.53383 * 359.97438 * 14 13 10 39 39 H 1.07998 * 122.53467 * 179.72834 * 15 14 13 40 40 H 1.08006 * 125.19917 * 180.20211 * 16 15 14 41 41 H 1.08997 * 111.00779 * 153.57574 * 18 5 3 42 42 H 1.09006 * 111.00240 * 277.42859 * 18 5 3 43 43 H 1.08996 * 110.36737 * 81.82679 * 19 18 5 44 44 H 1.09005 * 110.36647 * 204.04505 * 19 18 5 45 45 H 0.97000 * 120.00086 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6270 1.9839 0.8511 5 6 1.6345 2.1426 -1.3142 6 1 1.4538 1.4127 -2.1033 7 7 0.4535 2.9850 -1.1096 8 6 -0.2992 3.3577 -2.1637 9 8 0.0009 2.9953 -3.2816 10 6 -1.5136 4.2247 -1.9534 11 1 -1.2121 5.1682 -1.4985 12 6 -2.5000 3.5057 -1.0307 13 6 -2.1740 4.4949 -3.2808 14 6 -2.3599 5.7027 -3.8155 15 6 -2.9957 5.7047 -5.0451 16 6 -3.3166 4.4978 -5.5138 17 16 -2.8168 3.2658 -4.3624 18 6 2.8776 3.0106 -1.6435 19 6 4.0312 2.1009 -1.1519 20 7 3.5087 1.4535 0.0653 21 6 4.2660 0.9472 1.0876 22 1 3.7973 0.6671 2.0194 23 6 5.6362 0.7937 0.9264 24 7 6.2076 1.1354 -0.2091 25 14 6.6691 0.1023 2.3208 26 1 6.1928 -1.2627 2.6600 27 1 8.0915 0.0391 1.8988 28 1 6.5442 0.9804 3.5118 29 1 -0.3634 0.5968 0.8367 30 1 -0.3633 0.4262 -0.9351 31 1 -0.3633 -1.0230 0.0985 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.2133 3.2746 -0.2156 35 1 -3.3782 4.1330 -0.8782 36 1 -2.8015 2.5622 -1.4856 37 1 -2.0226 3.3100 -0.0705 38 1 -2.0425 6.6106 -3.3241 39 1 -3.2120 6.6143 -5.5857 40 1 -3.8120 4.3067 -6.4543 41 1 2.9538 3.1932 -2.7154 42 1 2.8568 3.9490 -1.0894 43 1 4.2716 1.3520 -1.9065 44 1 4.9120 2.6987 -0.9174 45 1 7.1651 1.0286 -0.3217 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087721817.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:52 Heat of formation + Delta-G solvation = 13.986255 kcal Electronic energy + Delta-G solvation = -25503.848201 eV Core-core repulsion = 22034.405879 eV Total energy + Delta-G solvation = -3469.442322 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.01225 -38.17067 -37.41098 -34.21480 -33.80297 -32.72852 -31.61409 -29.09174 -28.57550 -26.59042 -25.07118 -24.37690 -23.20457 -22.03859 -20.50764 -20.10946 -19.52704 -19.44660 -17.35202 -16.89135 -16.52890 -15.83119 -15.65720 -14.86431 -14.66725 -14.15968 -14.02377 -13.83753 -13.59668 -13.32424 -13.04852 -12.80548 -12.71657 -12.36459 -12.35696 -12.03791 -11.94968 -11.78182 -11.66996 -11.59878 -11.15316 -10.89432 -10.83897 -10.68659 -10.60786 -10.44524 -10.26118 -10.11142 -9.76039 -9.64603 -9.56863 -8.73026 -8.65096 -8.56918 -8.37884 -6.83753 -5.74510 -3.11278 0.93906 1.62638 2.02138 2.64837 2.78559 3.36824 3.39928 3.44015 3.44926 4.36339 4.46916 4.71464 4.84446 4.97431 5.07274 5.26978 5.34974 5.38452 5.43504 5.49475 5.52139 5.54377 5.57263 5.73464 5.80117 5.84172 5.85803 6.01424 6.04588 6.20652 6.22646 6.30882 6.39609 6.40205 6.45810 6.57394 6.69243 6.73258 6.93453 7.14043 7.52667 7.58804 7.72666 7.79346 8.25980 8.40968 9.17539 9.78677 10.45633 11.36285 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027605 B = 0.002909 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.048095 B = 9623.271497 C =10027.873956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.162 3.838 4 H 0.035 0.965 5 C 0.139 3.861 6 H 0.091 0.909 7 N -0.712 5.712 8 C 0.512 3.488 9 O -0.528 6.528 10 C -0.043 4.043 11 H 0.112 0.888 12 C -0.143 4.143 13 C -0.153 4.153 14 C -0.142 4.142 15 C -0.136 4.136 16 C -0.228 4.228 17 S 0.141 5.859 18 C -0.156 4.156 19 C 0.172 3.828 20 N -0.594 5.594 21 C -0.228 4.228 22 H 0.075 0.925 23 C -0.004 4.004 24 N -0.918 5.918 25 Si 0.911 3.089 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.285 1.285 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.397 0.603 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.160 0.840 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.025 0.975 44 H 0.079 0.921 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.175 7.602 -4.485 22.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.054 3.946 4 H 0.052 0.948 5 C 0.035 3.965 6 H 0.109 0.891 7 N -0.362 5.362 8 C 0.297 3.703 9 O -0.404 6.404 10 C -0.067 4.067 11 H 0.130 0.870 12 C -0.201 4.201 13 C -0.271 4.271 14 C -0.173 4.173 15 C -0.167 4.167 16 C -0.364 4.364 17 S 0.406 5.594 18 C -0.196 4.196 19 C 0.047 3.953 20 N -0.319 5.319 21 C -0.356 4.356 22 H 0.093 0.907 23 C -0.201 4.201 24 N -0.564 5.564 25 Si 0.741 3.259 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.212 1.212 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.231 0.769 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.178 0.822 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.043 0.957 44 H 0.097 0.903 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -19.787 5.690 -5.239 21.245 hybrid contribution 0.656 1.337 0.973 1.779 sum -19.131 7.027 -4.265 20.822 Atomic orbital electron populations 1.21768 0.97258 1.00503 1.00881 1.22019 0.93591 0.99196 1.02383 1.21052 0.87028 0.93301 0.93230 0.94787 1.22096 0.83482 0.92330 0.98582 0.89069 1.46042 1.28237 1.52470 1.09473 1.20302 0.83992 0.80883 0.85160 1.90739 1.71121 1.55168 1.23338 1.19854 0.93712 1.00687 0.92401 0.86999 1.21852 0.98765 1.00764 0.98726 1.23930 1.06584 0.96519 1.00056 1.20045 1.03259 0.97433 0.96550 1.20050 1.02063 0.98054 0.96581 1.25690 1.09404 0.96531 1.04763 1.84318 1.53880 1.09567 1.11630 1.23417 0.96775 0.99027 1.00339 1.21487 0.93398 0.92964 0.87440 1.44446 0.98332 1.68376 1.20730 1.18905 0.89127 1.35679 0.91899 0.90704 1.24870 0.97000 1.01122 0.97127 1.69915 1.10147 1.52563 1.23795 0.86222 0.79462 0.79015 0.81174 1.21123 1.21603 1.21155 0.93459 0.93307 0.93694 0.92376 0.91767 0.76906 0.91046 0.91799 0.91090 0.84582 0.84646 0.82222 0.91936 0.92126 0.95726 0.90257 0.93580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.57 37.16 0.36 -1.73 16 2 C -0.13 -2.40 5.41 -26.73 -0.14 -2.55 16 3 C 0.16 3.14 2.94 -66.95 -0.20 2.94 16 4 H 0.03 0.64 7.69 -51.93 -0.40 0.24 16 5 C 0.14 2.46 1.92 -66.10 -0.13 2.34 16 6 H 0.09 1.77 7.34 -51.93 -0.38 1.39 16 7 N -0.71 -9.84 4.83 -52.03 -0.25 -10.09 16 8 C 0.51 7.27 7.12 -10.99 -0.08 7.19 16 9 O -0.53 -9.56 14.98 5.56 0.08 -9.48 16 10 C -0.04 -0.45 3.10 -92.92 -0.29 -0.74 16 11 H 0.11 0.96 8.09 -51.93 -0.42 0.54 16 12 C -0.14 -1.19 9.01 37.16 0.33 -0.86 16 13 C -0.15 -1.78 4.60 -36.00 -0.17 -1.95 16 14 C -0.14 -1.52 10.01 -41.21 -0.41 -1.93 16 15 C -0.14 -1.37 10.18 -41.21 -0.42 -1.79 16 16 C -0.23 -2.34 11.23 29.04 0.33 -2.01 16 17 S 0.14 1.68 22.18 -107.50 -2.38 -0.71 16 18 C -0.16 -3.06 6.77 -24.59 -0.17 -3.22 16 19 C 0.17 4.16 5.46 -2.52 -0.01 4.14 16 20 N -0.59 -14.52 3.13 -162.57 -0.51 -15.03 16 21 C -0.23 -6.11 9.77 -15.06 -0.15 -6.25 16 22 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 23 C 0.00 -0.12 5.47 -17.43 -0.10 -0.22 16 24 N -0.92 -26.52 10.47 55.49 0.58 -25.94 16 25 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.69 7.38 -51.93 -0.38 0.31 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 33 H 0.06 1.25 7.91 -51.93 -0.41 0.84 16 34 H 0.40 4.49 7.73 -40.82 -0.32 4.18 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.59 8.00 -51.93 -0.42 0.18 16 37 H 0.07 0.50 7.56 -51.93 -0.39 0.11 16 38 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 39 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.16 1.26 8.06 -52.48 -0.42 0.83 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.02 0.65 8.11 -51.93 -0.42 0.23 16 44 H 0.08 2.13 6.73 -51.93 -0.35 1.78 16 45 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 374.66 15.07 5.65 5.65 Total: -1.00 -31.38 374.66 -10.33 -41.71 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -7.24 Total: 3.85 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -1.24 Total: -6.64 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.18 Total: -51.06 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.08 Total: -9.48 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.38 Total: -0.71 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.38 -10.33 -41.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087721817.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.699 kcal (2) G-P(sol) polarization free energy of solvation -31.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds