Wall clock time and date at job start Tue Mar 31 2020 13:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47499 * 2 1 4 4 H 1.09001 * 109.99359 * 56.19487 * 3 2 1 5 5 C 1.54329 * 109.88146 * 295.10436 * 3 2 1 6 6 H 1.09000 * 110.87130 * 336.82404 * 5 3 2 7 7 N 1.46503 * 110.71799 * 100.01988 * 5 3 2 8 8 C 1.34778 * 119.99936 * 199.97318 * 7 5 3 9 9 O 1.21283 * 120.00090 * 0.02562 * 8 7 5 10 10 C 1.50692 * 120.00024 * 180.02562 * 8 7 5 11 11 H 1.09000 * 109.47181 * 60.00449 * 10 8 7 12 12 C 1.53005 * 109.47330 * 299.99987 * 10 8 7 13 13 C 1.50704 * 109.47284 * 180.02562 * 10 8 7 14 14 C 1.33390 * 125.20540 * 240.00121 * 13 10 8 15 15 C 1.38424 * 114.92135 * 180.24431 * 14 13 10 16 16 C 1.33388 * 114.91869 * 359.49483 * 15 14 13 17 17 S 1.75882 * 109.59637 * 0.47662 * 16 15 14 18 18 C 1.55150 * 102.94334 * 218.38683 * 5 3 2 19 19 C 1.54910 * 101.58194 * 35.50214 * 18 5 3 20 20 N 1.47013 * 109.88486 * 177.29419 * 3 2 1 21 21 C 1.36934 * 125.65228 * 298.31863 * 20 3 2 22 22 H 1.08000 * 119.99960 * 348.12467 * 21 20 3 23 23 C 1.38816 * 120.00396 * 168.12096 * 21 20 3 24 24 N 1.31620 * 119.99720 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00075 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47476 * 60.00164 * 25 23 21 27 27 H 1.48500 * 109.46844 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46995 * 299.99865 * 25 23 21 29 29 H 1.09002 * 109.47212 * 305.49840 * 1 2 3 30 30 H 1.08997 * 109.46992 * 65.50005 * 1 2 3 31 31 H 1.09001 * 109.46946 * 185.49788 * 1 2 3 32 32 H 1.08999 * 109.47253 * 240.00055 * 2 1 3 33 33 H 1.08997 * 109.47296 * 119.99602 * 2 1 3 34 34 H 0.96998 * 120.00102 * 19.98041 * 7 5 3 35 35 H 1.09001 * 109.47216 * 179.97438 * 12 10 8 36 36 H 1.09000 * 109.47366 * 300.00349 * 12 10 8 37 37 H 1.09001 * 109.46679 * 60.00519 * 12 10 8 38 38 H 1.08001 * 122.53383 * 359.97438 * 14 13 10 39 39 H 1.07998 * 122.53467 * 179.72834 * 15 14 13 40 40 H 1.08006 * 125.19917 * 180.20211 * 16 15 14 41 41 H 1.08997 * 111.00779 * 153.57574 * 18 5 3 42 42 H 1.09006 * 111.00240 * 277.42859 * 18 5 3 43 43 H 1.08996 * 110.36737 * 81.82679 * 19 18 5 44 44 H 1.09005 * 110.36647 * 204.04505 * 19 18 5 45 45 H 0.97000 * 120.00086 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6270 1.9839 0.8511 5 6 1.6345 2.1426 -1.3142 6 1 1.4538 1.4127 -2.1033 7 7 0.4535 2.9850 -1.1096 8 6 -0.2992 3.3577 -2.1637 9 8 0.0009 2.9953 -3.2816 10 6 -1.5136 4.2247 -1.9534 11 1 -1.2121 5.1682 -1.4985 12 6 -2.5000 3.5057 -1.0307 13 6 -2.1740 4.4949 -3.2808 14 6 -2.3599 5.7027 -3.8155 15 6 -2.9957 5.7047 -5.0451 16 6 -3.3166 4.4978 -5.5138 17 16 -2.8168 3.2658 -4.3624 18 6 2.8776 3.0106 -1.6435 19 6 4.0312 2.1009 -1.1519 20 7 3.5087 1.4535 0.0653 21 6 4.2660 0.9472 1.0876 22 1 3.7973 0.6671 2.0194 23 6 5.6362 0.7937 0.9264 24 7 6.2076 1.1354 -0.2091 25 14 6.6691 0.1023 2.3208 26 1 6.1928 -1.2627 2.6600 27 1 8.0915 0.0391 1.8988 28 1 6.5442 0.9804 3.5118 29 1 -0.3634 0.5968 0.8367 30 1 -0.3633 0.4262 -0.9351 31 1 -0.3633 -1.0230 0.0985 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.2133 3.2746 -0.2156 35 1 -3.3782 4.1330 -0.8782 36 1 -2.8015 2.5622 -1.4856 37 1 -2.0226 3.3100 -0.0705 38 1 -2.0425 6.6106 -3.3241 39 1 -3.2120 6.6143 -5.5857 40 1 -3.8120 4.3067 -6.4543 41 1 2.9538 3.1932 -2.7154 42 1 2.8568 3.9490 -1.0894 43 1 4.2716 1.3520 -1.9065 44 1 4.9120 2.6987 -0.9174 45 1 7.1651 1.0286 -0.3217 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087721817.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:51 Heat of formation + Delta-G solvation = -4.225972 kcal Electronic energy + Delta-G solvation = -25504.637943 eV Core-core repulsion = 22034.405879 eV Total energy + Delta-G solvation = -3470.232064 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.22965 -39.52243 -38.44336 -35.62515 -34.93068 -34.16049 -33.36360 -30.82079 -29.44048 -28.07533 -26.49871 -25.62064 -24.29309 -23.35223 -22.17019 -21.49035 -20.95615 -20.22158 -18.75108 -18.37718 -17.66172 -17.13080 -16.66508 -16.50903 -15.90213 -15.71824 -15.38378 -15.35276 -14.67834 -14.47462 -14.32600 -13.94941 -13.70910 -13.54989 -13.52118 -13.24488 -13.16044 -13.07585 -12.87173 -12.69456 -12.55753 -12.52856 -12.39008 -12.20688 -12.06357 -11.98999 -11.87762 -11.55028 -11.48681 -11.34452 -10.78682 -10.65864 -9.95982 -9.52807 -9.24877 -8.84600 -7.83235 -5.21571 0.13734 0.82187 1.22723 1.47476 1.50331 1.56410 1.67804 1.85351 2.24753 2.52996 3.35407 3.53870 3.58870 3.85058 3.85721 3.93661 4.12612 4.20400 4.27698 4.34603 4.38815 4.42121 4.62333 4.65752 4.69138 4.74437 4.76056 4.87070 4.87782 4.92228 5.02706 5.17099 5.20522 5.23277 5.27684 5.32624 5.43378 5.47394 5.51498 5.57417 5.65620 5.68737 5.72968 6.24006 6.61781 7.09570 7.30794 7.77854 8.44249 9.26808 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027605 B = 0.002909 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.048095 B = 9623.271497 C =10027.873956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.127 4.127 3 C 0.160 3.840 4 H 0.056 0.944 5 C 0.160 3.840 6 H 0.072 0.928 7 N -0.699 5.699 8 C 0.512 3.488 9 O -0.569 6.569 10 C -0.035 4.035 11 H 0.140 0.860 12 C -0.140 4.140 13 C -0.168 4.168 14 C -0.144 4.144 15 C -0.143 4.143 16 C -0.227 4.227 17 S 0.089 5.911 18 C -0.141 4.141 19 C 0.180 3.820 20 N -0.613 5.613 21 C -0.231 4.231 22 H 0.085 0.915 23 C -0.065 4.065 24 N -0.951 5.951 25 Si 0.976 3.024 26 H -0.278 1.278 27 H -0.299 1.299 28 H -0.274 1.274 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.032 0.968 33 H 0.049 0.951 34 H 0.414 0.586 35 H 0.089 0.911 36 H 0.050 0.950 37 H 0.088 0.912 38 H 0.158 0.842 39 H 0.161 0.839 40 H 0.180 0.820 41 H 0.061 0.939 42 H 0.073 0.927 43 H -0.012 1.012 44 H 0.046 0.954 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.753 9.070 -2.999 24.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.166 4.166 3 C 0.053 3.947 4 H 0.073 0.927 5 C 0.054 3.946 6 H 0.090 0.910 7 N -0.351 5.351 8 C 0.299 3.701 9 O -0.448 6.448 10 C -0.057 4.057 11 H 0.157 0.843 12 C -0.198 4.198 13 C -0.286 4.286 14 C -0.175 4.175 15 C -0.173 4.173 16 C -0.363 4.363 17 S 0.353 5.647 18 C -0.180 4.180 19 C 0.054 3.946 20 N -0.338 5.338 21 C -0.360 4.360 22 H 0.102 0.898 23 C -0.258 4.258 24 N -0.600 5.600 25 Si 0.804 3.196 26 H -0.204 1.204 27 H -0.225 1.225 28 H -0.200 1.200 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.251 0.749 35 H 0.107 0.893 36 H 0.069 0.931 37 H 0.107 0.893 38 H 0.176 0.824 39 H 0.178 0.822 40 H 0.197 0.803 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.006 0.994 44 H 0.064 0.936 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -22.431 7.172 -3.714 23.840 hybrid contribution 1.402 0.917 0.446 1.734 sum -21.028 8.090 -3.268 22.766 Atomic orbital electron populations 1.21650 0.93641 1.01963 1.01849 1.21908 0.96659 0.97648 1.00423 1.21248 0.84264 0.94508 0.94651 0.92681 1.21578 0.84204 0.91821 0.97010 0.90991 1.45798 1.26846 1.51824 1.10628 1.21014 0.84501 0.80375 0.84222 1.90733 1.72273 1.56688 1.25093 1.19902 0.92087 1.01090 0.92665 0.84262 1.21877 0.98979 1.00250 0.98670 1.24124 1.07458 0.96430 1.00589 1.20412 1.02490 0.97889 0.96673 1.20412 1.01467 0.98859 0.96592 1.25970 1.09304 0.95927 1.05073 1.84477 1.55106 1.11588 1.13492 1.23213 0.95869 0.98760 1.00199 1.21171 0.94139 0.92340 0.86907 1.44687 1.00629 1.68387 1.20089 1.19299 0.89580 1.34384 0.92761 0.89774 1.25687 0.98393 1.02270 0.99455 1.70143 1.09716 1.54316 1.25825 0.85194 0.77187 0.78568 0.78641 1.20440 1.22513 1.19989 0.91088 0.93318 0.92386 0.94919 0.93202 0.74883 0.89254 0.93096 0.89346 0.82443 0.82190 0.80280 0.92048 0.90816 0.99368 0.93573 0.94463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.46 9.57 71.98 0.69 -2.77 16 2 C -0.13 -4.53 5.41 30.59 0.17 -4.36 16 3 C 0.16 6.06 2.94 45.35 0.13 6.19 16 4 H 0.06 1.90 7.69 -2.39 -0.02 1.88 16 5 C 0.16 5.54 1.92 46.18 0.09 5.63 16 6 H 0.07 2.83 7.34 -2.39 -0.02 2.82 16 7 N -0.70 -17.69 4.83 -436.92 -2.11 -19.80 16 8 C 0.51 13.56 7.12 87.65 0.62 14.18 16 9 O -0.57 -20.35 14.98 -3.04 -0.05 -20.40 16 10 C -0.03 -0.62 3.10 -12.29 -0.04 -0.66 16 11 H 0.14 1.78 8.09 -2.39 -0.02 1.76 16 12 C -0.14 -1.86 9.01 71.98 0.65 -1.21 16 13 C -0.17 -3.58 4.60 24.59 0.11 -3.47 16 14 C -0.14 -2.68 10.01 21.22 0.21 -2.47 16 15 C -0.14 -2.51 10.18 21.22 0.22 -2.29 16 16 C -0.23 -4.30 11.23 66.72 0.75 -3.56 16 17 S 0.09 2.06 22.18 -56.49 -1.25 0.80 16 18 C -0.14 -5.55 6.77 31.98 0.22 -5.33 16 19 C 0.18 9.07 5.46 86.85 0.47 9.55 16 20 N -0.61 -30.41 3.13 -668.24 -2.09 -32.50 16 21 C -0.23 -12.49 9.77 84.03 0.82 -11.67 16 22 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 23 C -0.07 -3.65 5.47 84.86 0.46 -3.18 16 24 N -0.95 -57.27 10.47 21.65 0.23 -57.04 16 25 Si 0.98 45.20 29.55 68.60 2.03 47.23 16 26 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 27 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 28 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.05 1.28 7.38 -2.39 -0.02 1.26 16 31 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.03 1.31 8.08 -2.39 -0.02 1.29 16 33 H 0.05 1.91 7.91 -2.39 -0.02 1.89 16 34 H 0.41 7.81 7.73 -92.71 -0.72 7.09 16 35 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.05 0.83 8.00 -2.39 -0.02 0.81 16 37 H 0.09 0.86 7.56 -2.39 -0.02 0.84 16 38 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 39 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 40 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 41 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 43 H -0.01 -0.66 8.11 -2.39 -0.02 -0.68 16 44 H 0.05 2.60 6.73 -2.38 -0.02 2.59 16 45 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -71.34 374.66 2.60 -68.74 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.26 Total: 18.41 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 5.58 Total: -5.44 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -3.97 Total: -109.34 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.05 Total: -20.40 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -1.25 Total: 0.80 kcal Total: -71.34 2.60 -68.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087721817.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.516 kcal (2) G-P(sol) polarization free energy of solvation -71.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds