Wall clock time and date at job start Tue Mar 31 2020 14:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35660 * 117.00331 * 2 1 4 4 C 1.38634 * 120.13224 * 359.97438 * 3 2 1 5 5 C 1.38136 * 120.15236 * 179.97438 * 4 3 2 6 6 C 1.38410 * 120.43387 * 0.02562 * 5 4 3 7 7 C 1.38136 * 120.27408 * 359.74733 * 6 5 4 8 8 F 1.35098 * 120.08073 * 180.28049 * 7 6 5 9 9 C 1.39962 * 119.83116 * 0.48265 * 7 6 5 10 10 C 1.47396 * 120.20690 * 179.79041 * 9 7 6 11 11 O 1.21598 * 120.00037 * 269.72270 * 10 9 7 12 12 N 1.34781 * 119.99615 * 89.72634 * 10 9 7 13 13 C 1.46501 * 119.99564 * 179.97438 * 12 10 9 14 14 H 1.08999 * 110.64330 * 323.31360 * 13 12 10 15 15 C 1.55157 * 110.71624 * 86.45391 * 13 12 10 16 16 C 1.54918 * 101.58155 * 153.86110 * 15 13 12 17 17 N 1.47425 * 104.82827 * 322.99497 * 16 15 13 18 18 C 1.36939 * 125.64536 * 204.14743 * 17 16 15 19 19 H 1.08000 * 120.00317 * 179.97438 * 18 17 16 20 20 C 1.38815 * 119.99731 * 359.97154 * 18 17 16 21 21 N 1.31622 * 120.00280 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99768 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47128 * 90.00647 * 22 20 18 24 24 H 1.48500 * 109.47331 * 210.00168 * 22 20 18 25 25 H 1.48498 * 109.47256 * 330.00440 * 22 20 18 26 26 C 1.47015 * 108.70882 * 24.12597 * 17 16 15 27 27 H 1.09004 * 110.00901 * 239.45398 * 26 17 16 28 28 C 1.52997 * 109.88603 * 118.35688 * 26 17 16 29 29 H 1.08995 * 109.46934 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46912 * 299.99585 * 1 2 3 31 31 H 1.09000 * 109.46844 * 59.99568 * 1 2 3 32 32 H 1.07996 * 119.92629 * 0.02562 * 4 3 2 33 33 H 1.08000 * 119.78107 * 180.02562 * 5 4 3 34 34 H 1.08004 * 119.86200 * 180.02562 * 6 5 4 35 35 H 0.96995 * 120.00238 * 0.02562 * 12 10 9 36 36 H 1.09001 * 111.00846 * 271.93819 * 15 13 12 37 37 H 1.09000 * 111.00346 * 35.79350 * 15 13 12 38 38 H 1.08999 * 110.35942 * 81.82689 * 16 15 13 39 39 H 1.08996 * 110.36556 * 204.15522 * 16 15 13 40 40 H 0.96997 * 119.99986 * 180.02562 * 21 20 18 41 41 H 1.08997 * 109.46797 * 302.19478 * 28 26 17 42 42 H 1.09003 * 109.47122 * 62.18911 * 28 26 17 43 43 H 1.08997 * 109.47254 * 182.19083 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2926 2.3732 -0.0005 5 6 1.9194 3.6042 0.0000 6 6 3.3010 3.6875 0.0005 7 6 4.0679 2.5386 0.0058 8 9 5.4162 2.6245 0.0120 9 6 3.4447 1.2854 0.0004 10 6 4.2550 0.0542 0.0013 11 8 4.5896 -0.4543 -1.0514 12 7 4.6250 -0.5082 1.1690 13 6 5.4299 -1.7322 1.1699 14 1 5.1320 -2.3886 0.3522 15 6 6.9418 -1.3950 1.0802 16 6 7.5775 -2.6334 1.7602 17 7 6.6529 -2.9786 2.8554 18 6 6.9833 -3.6690 3.9909 19 1 6.2301 -3.8723 4.7377 20 6 8.2864 -4.1076 4.1820 21 7 9.2045 -3.8595 3.2721 22 14 8.7370 -5.0500 5.7307 23 1 8.5453 -6.5042 5.4986 24 1 10.1574 -4.7868 6.0748 25 1 7.8665 -4.6084 6.8498 26 6 5.3176 -2.4585 2.5269 27 1 4.9903 -1.7588 3.2959 28 6 4.3214 -3.6145 2.4174 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2141 2.3178 -0.0005 33 1 1.3275 4.5075 0.0000 34 1 3.7814 4.6548 0.0014 35 1 4.3577 -0.1028 2.0087 36 1 7.2626 -1.3117 0.0418 37 1 7.1724 -0.4844 1.6330 38 1 7.6516 -3.4586 1.0520 39 1 8.5611 -2.3843 2.1583 40 1 10.1150 -4.1663 3.4055 41 1 4.6642 -4.3191 1.6597 42 1 4.2473 -4.1226 3.3789 43 1 3.3430 -3.2255 2.1357 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088586218.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:27 Heat of formation + Delta-G solvation = -58.895073 kcal Electronic energy + Delta-G solvation = -27644.222589 eV Core-core repulsion = 23605.406719 eV Total energy + Delta-G solvation = -4038.815870 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.15001 -40.70223 -39.25794 -37.66521 -37.24321 -33.94554 -32.21489 -31.36126 -30.30472 -30.28899 -28.54731 -27.72098 -25.22121 -23.97578 -23.60436 -22.56586 -20.82587 -20.07438 -19.75758 -18.74560 -17.45820 -17.32466 -16.76627 -16.36372 -16.29958 -15.87256 -15.59641 -15.31661 -14.95318 -14.70401 -14.19487 -13.96144 -13.82841 -13.40696 -13.10021 -12.78591 -12.77182 -12.71527 -12.18298 -12.09237 -11.86117 -11.67957 -11.52195 -11.42646 -11.09306 -10.84032 -10.80740 -10.47233 -10.38913 -10.06793 -9.78234 -9.68028 -9.51243 -9.18692 -8.69349 -8.64685 -8.55516 -6.84185 -5.62232 -3.05201 0.62177 0.87323 2.68612 2.74850 3.07937 3.37785 3.41662 3.46661 3.48502 4.00982 4.32665 4.49911 4.56166 4.65870 4.71999 4.79603 4.89397 4.92023 5.16413 5.32505 5.45734 5.48684 5.59156 5.65846 5.66846 5.71163 5.87750 5.88529 6.17338 6.28148 6.30918 6.36950 6.40514 6.59505 6.65837 6.79230 6.88823 6.90704 7.15644 7.56491 7.65717 7.75141 7.89176 8.37219 8.41906 9.23644 9.84558 10.48933 11.41017 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019954 B = 0.003220 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.889347 B = 8692.242309 C = 9350.728797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.302 6.302 3 C 0.191 3.809 4 C -0.224 4.224 5 C -0.037 4.037 6 C -0.195 4.195 7 C 0.174 3.826 8 F -0.121 7.121 9 C -0.194 4.194 10 C 0.574 3.426 11 O -0.528 6.528 12 N -0.702 5.702 13 C 0.136 3.864 14 H 0.092 0.908 15 C -0.153 4.153 16 C 0.154 3.846 17 N -0.595 5.595 18 C -0.220 4.220 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.920 5.920 22 Si 0.914 3.086 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.157 3.843 27 H 0.036 0.964 28 C -0.155 4.155 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.398 0.602 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.015 0.985 39 H 0.109 0.891 40 H 0.252 0.748 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.948 15.459 -5.970 25.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.213 6.213 3 C 0.143 3.857 4 C -0.243 4.243 5 C -0.055 4.055 6 C -0.214 4.214 7 C 0.153 3.847 8 F -0.099 7.099 9 C -0.199 4.199 10 C 0.358 3.642 11 O -0.404 6.404 12 N -0.351 5.351 13 C 0.031 3.969 14 H 0.110 0.890 15 C -0.193 4.193 16 C 0.029 3.971 17 N -0.320 5.320 18 C -0.348 4.348 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.569 5.569 22 Si 0.745 3.255 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.049 3.951 27 H 0.053 0.947 28 C -0.214 4.214 29 H 0.124 0.876 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.161 0.839 35 H 0.232 0.768 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.033 0.967 39 H 0.127 0.873 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -18.359 14.753 -6.613 24.463 hybrid contribution 0.033 -0.186 1.134 1.150 sum -18.326 14.567 -5.479 24.043 Atomic orbital electron populations 1.23191 0.77394 1.04740 1.01572 1.86142 1.22072 1.25875 1.87245 1.18587 0.89790 0.85124 0.92197 1.21236 1.00635 0.91737 1.10677 1.20868 0.93441 0.97502 0.93684 1.20996 0.94317 0.97580 1.08468 1.17303 0.77322 0.92214 0.97831 1.91588 1.28420 1.96864 1.93037 1.19208 0.91963 0.93946 1.14804 1.17587 0.79073 0.83074 0.84481 1.90800 1.55377 1.62955 1.31281 1.46027 1.53657 1.27678 1.07761 1.22191 0.91060 0.84613 0.98990 0.88977 1.23411 0.94206 1.01115 1.00565 1.21951 0.96530 0.90543 0.88121 1.44492 1.02658 1.64850 1.20041 1.19024 0.94012 1.26937 0.94848 0.90474 1.24790 0.96003 1.01297 0.98514 1.69802 1.02222 1.50824 1.34034 0.86083 0.77512 0.79631 0.82311 1.21672 1.21692 1.20743 1.20963 0.88285 0.93672 0.92228 0.94692 1.22236 0.97629 0.99753 1.01809 0.87640 0.92128 0.92210 0.84227 0.84282 0.83915 0.76764 0.91901 0.91928 0.96739 0.87310 0.93706 0.92914 0.92755 0.94257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.30 -3.54 9.95 -18.68 -0.19 -3.73 16 3 C 0.19 2.21 6.70 -38.70 -0.26 1.95 16 4 C -0.22 -1.79 9.03 -39.47 -0.36 -2.15 16 5 C -0.04 -0.26 10.02 -39.56 -0.40 -0.66 16 6 C -0.19 -1.75 10.00 -39.56 -0.40 -2.14 16 7 C 0.17 2.20 7.29 -38.97 -0.28 1.92 16 8 F -0.12 -1.76 16.83 2.25 0.04 -1.72 16 9 C -0.19 -2.74 5.64 -104.79 -0.59 -3.33 16 10 C 0.57 10.08 6.43 -12.53 -0.08 10.00 16 11 O -0.53 -11.26 16.83 5.28 0.09 -11.17 16 12 N -0.70 -11.81 5.20 -53.11 -0.28 -12.08 16 13 C 0.14 2.66 2.76 -66.09 -0.18 2.48 16 14 H 0.09 1.93 7.41 -51.93 -0.38 1.54 16 15 C -0.15 -3.25 6.77 -24.58 -0.17 -3.42 16 16 C 0.15 3.87 5.89 -2.52 -0.01 3.85 16 17 N -0.60 -15.19 3.13 -162.57 -0.51 -15.70 16 18 C -0.22 -6.06 9.89 -15.06 -0.15 -6.21 16 19 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 20 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 21 N -0.92 -27.00 10.09 55.49 0.56 -26.44 16 22 Si 0.91 22.10 29.55 -169.99 -5.02 17.07 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C 0.16 3.27 3.48 -66.96 -0.23 3.03 16 27 H 0.04 0.71 7.68 -51.93 -0.40 0.32 16 28 C -0.15 -2.96 9.14 37.16 0.34 -2.63 16 29 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.28 7.66 -51.93 -0.40 -0.11 16 31 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 32 H 0.14 0.70 6.29 -52.49 -0.33 0.37 16 33 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 34 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 35 H 0.40 5.80 8.29 -40.82 -0.34 5.47 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.11 3.05 5.87 -51.93 -0.30 2.74 16 40 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.05 1.06 8.04 -51.93 -0.42 0.64 16 43 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 361.24 15.07 5.44 5.44 Total: -1.00 -34.03 361.24 -7.64 -41.67 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -5.90 Total: 3.20 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -1.87 Total: 3.46 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -0.22 Total: -54.22 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.10 Total: -14.89 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.03 -7.64 -41.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088586218.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.225 kcal (2) G-P(sol) polarization free energy of solvation -34.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds