Wall clock time and date at job start Tue Mar 31 2020 14:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35757 * 116.99929 * 2 1 4 4 C 1.38930 * 119.92216 * 359.97438 * 3 2 1 5 5 C 1.37733 * 120.12103 * 180.02562 * 4 3 2 6 6 C 1.39725 * 119.95040 * 359.97438 * 5 4 3 7 7 C 1.47603 * 120.08033 * 179.97438 * 6 5 4 8 8 O 1.21578 * 120.00423 * 359.97438 * 7 6 5 9 9 N 1.34785 * 119.99782 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99758 * 180.02562 * 9 7 6 11 11 H 1.09000 * 110.78085 * 328.23427 * 10 9 7 12 12 C 1.55151 * 110.72381 * 91.47695 * 10 9 7 13 13 C 1.54900 * 101.58486 * 153.86319 * 12 10 9 14 14 N 1.47423 * 104.83310 * 322.99061 * 13 12 10 15 15 C 1.36941 * 125.65242 * 204.16281 * 14 13 12 16 16 H 1.07991 * 120.00108 * 161.44224 * 15 14 13 17 17 C 1.38814 * 119.99442 * 341.44748 * 15 14 13 18 18 N 1.31624 * 119.99705 * 157.60336 * 17 15 14 19 19 Si 1.86790 * 120.00394 * 337.59859 * 17 15 14 20 20 H 1.48505 * 109.47272 * 84.54036 * 19 17 15 21 21 H 1.48499 * 109.47253 * 204.54176 * 19 17 15 22 22 H 1.48504 * 109.47064 * 324.54312 * 19 17 15 23 23 C 1.47023 * 108.70215 * 24.13122 * 14 13 12 24 24 H 1.09007 * 110.00872 * 239.45301 * 23 14 13 25 25 C 1.52995 * 109.88595 * 118.35942 * 23 14 13 26 26 C 1.39735 * 119.83598 * 0.25494 * 6 5 4 27 27 C 1.37899 * 119.88411 * 359.48938 * 26 6 5 28 28 F 1.35103 * 119.97613 * 180.25620 * 27 26 6 29 29 H 1.09002 * 109.47131 * 300.00256 * 1 2 3 30 30 H 1.08998 * 109.46652 * 60.00336 * 1 2 3 31 31 H 1.08993 * 109.47006 * 180.02562 * 1 2 3 32 32 H 1.07999 * 119.93844 * 359.97438 * 4 3 2 33 33 H 1.08002 * 120.02700 * 180.02562 * 5 4 3 34 34 H 0.96998 * 119.99641 * 0.02562 * 9 7 6 35 35 H 1.09002 * 111.00595 * 271.94118 * 12 10 9 36 36 H 1.08999 * 111.00142 * 35.78401 * 12 10 9 37 37 H 1.09006 * 110.36839 * 204.15145 * 13 12 10 38 38 H 1.09002 * 110.46163 * 81.87540 * 13 12 10 39 39 H 0.96998 * 120.00255 * 180.02562 * 18 17 15 40 40 H 1.09007 * 109.47039 * 302.18944 * 25 23 14 41 41 H 1.08997 * 109.47490 * 62.18627 * 25 23 14 42 42 H 1.09000 * 109.47049 * 182.18805 * 25 23 14 43 43 H 1.08000 * 120.05536 * 179.74641 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 1.2871 2.3737 -0.0005 5 6 1.9081 3.6031 -0.0011 6 6 3.3033 3.6799 -0.0005 7 6 3.9718 4.9959 -0.0017 8 8 3.3084 6.0147 -0.0036 9 7 5.3177 5.0680 -0.0017 10 6 5.9812 6.3741 -0.0022 11 1 5.3839 7.1111 -0.5391 12 6 6.2631 6.8473 1.4482 13 6 7.4814 7.7809 1.2395 14 7 8.2800 7.1294 0.1854 15 6 9.6239 7.2978 -0.0169 16 1 10.1768 6.5761 -0.5996 17 6 10.2752 8.3963 0.5271 18 7 11.5756 8.3577 0.7273 19 14 9.3065 9.9293 0.9750 20 1 8.7254 9.7687 2.3322 21 1 10.2098 11.1078 0.9596 22 1 8.2139 10.1300 -0.0106 23 6 7.3948 6.2681 -0.6122 24 1 7.7408 5.2354 -0.5686 25 6 7.3722 6.7482 -2.0647 26 6 4.0640 2.5078 -0.0048 27 6 3.4352 1.2805 0.0010 28 9 4.1690 0.1461 0.0021 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 0.2087 2.3146 -0.0014 33 1 1.3172 4.5071 -0.0011 34 1 5.8469 4.2551 -0.0013 35 1 5.4134 7.3980 1.8517 36 1 6.5215 6.0054 2.0905 37 1 8.0605 7.8604 2.1596 38 1 7.1537 8.7675 0.9120 39 1 12.0308 9.1251 1.1078 40 1 7.0426 7.7867 -2.0991 41 1 8.3733 6.6706 -2.4887 42 1 6.6845 6.1295 -2.6412 43 1 5.1426 2.5630 -0.0086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088636183.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:31 Heat of formation + Delta-G solvation = -57.930473 kcal Electronic energy + Delta-G solvation = -26917.599183 eV Core-core repulsion = 22878.825142 eV Total energy + Delta-G solvation = -4038.774041 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.10505 -40.73319 -39.81184 -38.18369 -37.19043 -34.30975 -32.28884 -31.19525 -30.87521 -30.72392 -29.18437 -27.94603 -25.28239 -23.99013 -23.57140 -23.05728 -21.29744 -20.52165 -19.84533 -18.87473 -17.87575 -17.33308 -16.83571 -16.62815 -16.46315 -15.98779 -15.46800 -15.20756 -15.04149 -14.84645 -14.81375 -14.52574 -14.07077 -13.47387 -13.29053 -13.03820 -12.89618 -12.76848 -12.68106 -12.41672 -12.14930 -11.90629 -11.68439 -11.60996 -11.53880 -11.21464 -10.91664 -10.79413 -10.50172 -10.18942 -10.00988 -9.93545 -9.46868 -9.44761 -8.94533 -8.70288 -8.60855 -7.09966 -5.95770 -3.26942 0.39021 0.68816 2.54039 2.58296 3.08050 3.35515 3.43844 3.49538 3.51607 3.73983 4.16685 4.32197 4.54063 4.55253 4.63163 4.68018 4.71807 4.91351 4.94870 4.98099 5.13156 5.20882 5.31626 5.34054 5.49546 5.58623 5.65300 5.81349 5.85810 5.91042 6.02713 6.06189 6.15923 6.26673 6.38343 6.42406 6.61069 6.71598 6.72210 6.77620 6.95307 7.50030 7.68305 8.16444 8.29873 8.80994 9.67150 10.14229 11.20047 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027553 B = 0.002668 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.964496 B =10492.731464 C =11003.476287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.306 6.306 3 C 0.118 3.882 4 C -0.192 4.192 5 C -0.027 4.027 6 C -0.140 4.140 7 C 0.562 3.438 8 O -0.537 6.537 9 N -0.709 5.709 10 C 0.134 3.866 11 H 0.100 0.900 12 C -0.140 4.140 13 C 0.111 3.889 14 N -0.601 5.601 15 C -0.239 4.239 16 H 0.093 0.907 17 C 0.023 3.977 18 N -0.908 5.908 19 Si 0.881 3.119 20 H -0.285 1.285 21 H -0.303 1.303 22 H -0.276 1.276 23 C 0.155 3.845 24 H 0.046 0.954 25 C -0.156 4.156 26 C -0.082 4.082 27 C 0.064 3.936 28 F -0.128 7.128 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.399 0.601 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.028 0.972 39 H 0.263 0.737 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.041 0.959 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.318 -15.509 -1.468 28.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.219 6.219 3 C 0.071 3.929 4 C -0.211 4.211 5 C -0.046 4.046 6 C -0.143 4.143 7 C 0.349 3.651 8 O -0.415 6.415 9 N -0.360 5.360 10 C 0.029 3.971 11 H 0.118 0.882 12 C -0.180 4.180 13 C -0.014 4.014 14 N -0.327 5.327 15 C -0.365 4.365 16 H 0.110 0.890 17 C -0.176 4.176 18 N -0.551 5.551 19 Si 0.711 3.289 20 H -0.212 1.212 21 H -0.231 1.231 22 H -0.201 1.201 23 C 0.047 3.953 24 H 0.064 0.936 25 C -0.215 4.215 26 C -0.101 4.101 27 C 0.044 3.956 28 F -0.107 7.107 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.123 0.877 32 H 0.163 0.837 33 H 0.165 0.835 34 H 0.235 0.765 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.046 0.954 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.060 0.940 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -23.401 -14.916 -1.438 27.788 hybrid contribution -0.239 0.491 0.237 0.595 sum -23.640 -14.424 -1.201 27.719 Atomic orbital electron populations 1.23197 0.77440 1.04612 1.01848 1.86117 1.22153 1.25717 1.87905 1.19270 0.90862 0.85778 0.96978 1.21131 1.00656 0.91002 1.08275 1.21142 0.93153 0.97961 0.92370 1.19758 0.94147 0.92633 1.07810 1.17953 0.82321 0.88233 0.76594 1.90785 1.64620 1.35988 1.50105 1.45957 1.05971 1.09890 1.74176 1.22186 0.93734 0.83918 0.97270 0.88166 1.23140 0.98557 1.00223 0.96067 1.21963 0.91428 0.94574 0.93460 1.44813 1.04910 1.52434 1.30522 1.18572 0.79557 1.06200 1.32213 0.88964 1.24989 0.95124 0.97967 0.99507 1.69835 1.08254 1.30775 1.46258 0.87007 0.79065 0.84352 0.78425 1.21190 1.23078 1.20140 1.21090 0.87713 0.95514 0.90936 0.93615 1.22208 1.01575 1.00700 0.97030 1.21212 1.01139 0.89735 0.98058 1.16727 0.85947 0.82930 1.09989 1.91538 1.76434 1.48363 1.94318 0.92083 0.92078 0.87693 0.83737 0.83470 0.76486 0.91162 0.90854 0.91902 0.95436 0.92689 0.92985 0.91942 0.94028 0.83336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.31 -2.69 10.35 -18.98 -0.20 -2.89 16 3 C 0.12 1.10 6.70 -38.98 -0.26 0.84 16 4 C -0.19 -1.48 9.01 -39.51 -0.36 -1.83 16 5 C -0.03 -0.25 9.58 -39.21 -0.38 -0.63 16 6 C -0.14 -1.51 5.87 -104.96 -0.62 -2.13 16 7 C 0.56 7.62 7.76 -12.44 -0.10 7.52 16 8 O -0.54 -8.99 15.98 5.30 0.08 -8.91 16 9 N -0.71 -9.34 5.13 -53.05 -0.27 -9.62 16 10 C 0.13 2.18 2.84 -66.10 -0.19 2.00 16 11 H 0.10 1.75 7.26 -51.93 -0.38 1.38 16 12 C -0.14 -2.42 6.77 -24.59 -0.17 -2.59 16 13 C 0.11 2.39 4.70 -2.53 -0.01 2.38 16 14 N -0.60 -13.95 2.94 -162.58 -0.48 -14.43 16 15 C -0.24 -6.54 10.19 -15.06 -0.15 -6.70 16 16 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 17 C 0.02 0.65 5.43 -17.43 -0.09 0.56 16 18 N -0.91 -27.67 13.97 55.49 0.78 -26.89 16 19 Si 0.88 22.49 24.27 -169.99 -4.13 18.36 16 20 H -0.28 -7.01 6.49 56.52 0.37 -6.64 16 21 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 22 H -0.28 -6.96 6.66 56.52 0.38 -6.59 16 23 C 0.15 2.88 3.48 -66.95 -0.23 2.65 16 24 H 0.05 0.82 7.71 -51.93 -0.40 0.42 16 25 C -0.16 -2.77 9.13 37.15 0.34 -2.43 16 26 C -0.08 -0.79 9.51 -39.15 -0.37 -1.17 16 27 C 0.06 0.67 7.30 -39.36 -0.29 0.38 16 28 F -0.13 -1.49 17.10 2.25 0.04 -1.45 16 29 H 0.06 0.19 7.65 -51.93 -0.40 -0.21 16 30 H 0.06 0.19 7.65 -51.93 -0.40 -0.21 16 31 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.14 0.69 6.27 -52.49 -0.33 0.36 16 33 H 0.15 1.31 7.64 -52.49 -0.40 0.91 16 34 H 0.40 4.32 6.39 -40.82 -0.26 4.06 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.06 1.44 6.64 -51.93 -0.34 1.09 16 38 H 0.03 0.63 5.57 -51.93 -0.29 0.34 16 39 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.06 1.18 8.04 -51.93 -0.42 0.77 16 42 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.15 1.18 6.39 -52.49 -0.34 0.85 16 LS Contribution 352.39 15.07 5.31 5.31 Total: -1.00 -33.44 352.39 -6.43 -39.87 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -5.68 Total: 0.71 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -1.88 Total: -0.06 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: 0.03 Total: -50.94 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -0.11 Total: -11.80 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.13 Total: 18.36 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.44 -6.43 -39.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088636183.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.065 kcal (2) G-P(sol) polarization free energy of solvation -33.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds