Wall clock time and date at job start Tue Mar 31 2020 14:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35757 * 116.99929 * 2 1 4 4 C 1.38930 * 119.92216 * 359.97438 * 3 2 1 5 5 C 1.37733 * 120.12103 * 180.02562 * 4 3 2 6 6 C 1.39725 * 119.95040 * 359.97438 * 5 4 3 7 7 C 1.47603 * 120.08033 * 179.97438 * 6 5 4 8 8 O 1.21578 * 120.00423 * 359.97438 * 7 6 5 9 9 N 1.34785 * 119.99782 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99758 * 180.02562 * 9 7 6 11 11 H 1.09000 * 110.78085 * 328.23427 * 10 9 7 12 12 C 1.55151 * 110.72381 * 91.47695 * 10 9 7 13 13 C 1.54900 * 101.58486 * 153.86319 * 12 10 9 14 14 N 1.47423 * 104.83310 * 322.99061 * 13 12 10 15 15 C 1.36941 * 125.65242 * 204.16281 * 14 13 12 16 16 H 1.07991 * 120.00108 * 161.44224 * 15 14 13 17 17 C 1.38814 * 119.99442 * 341.44748 * 15 14 13 18 18 N 1.31624 * 119.99705 * 157.60336 * 17 15 14 19 19 Si 1.86790 * 120.00394 * 337.59859 * 17 15 14 20 20 H 1.48505 * 109.47272 * 84.54036 * 19 17 15 21 21 H 1.48499 * 109.47253 * 204.54176 * 19 17 15 22 22 H 1.48504 * 109.47064 * 324.54312 * 19 17 15 23 23 C 1.47023 * 108.70215 * 24.13122 * 14 13 12 24 24 H 1.09007 * 110.00872 * 239.45301 * 23 14 13 25 25 C 1.52995 * 109.88595 * 118.35942 * 23 14 13 26 26 C 1.39735 * 119.83598 * 0.25494 * 6 5 4 27 27 C 1.37899 * 119.88411 * 359.48938 * 26 6 5 28 28 F 1.35103 * 119.97613 * 180.25620 * 27 26 6 29 29 H 1.09002 * 109.47131 * 300.00256 * 1 2 3 30 30 H 1.08998 * 109.46652 * 60.00336 * 1 2 3 31 31 H 1.08993 * 109.47006 * 180.02562 * 1 2 3 32 32 H 1.07999 * 119.93844 * 359.97438 * 4 3 2 33 33 H 1.08002 * 120.02700 * 180.02562 * 5 4 3 34 34 H 0.96998 * 119.99641 * 0.02562 * 9 7 6 35 35 H 1.09002 * 111.00595 * 271.94118 * 12 10 9 36 36 H 1.08999 * 111.00142 * 35.78401 * 12 10 9 37 37 H 1.09006 * 110.36839 * 204.15145 * 13 12 10 38 38 H 1.09002 * 110.46163 * 81.87540 * 13 12 10 39 39 H 0.96998 * 120.00255 * 180.02562 * 18 17 15 40 40 H 1.09007 * 109.47039 * 302.18944 * 25 23 14 41 41 H 1.08997 * 109.47490 * 62.18627 * 25 23 14 42 42 H 1.09000 * 109.47049 * 182.18805 * 25 23 14 43 43 H 1.08000 * 120.05536 * 179.74641 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 1.2871 2.3737 -0.0005 5 6 1.9081 3.6031 -0.0011 6 6 3.3033 3.6799 -0.0005 7 6 3.9718 4.9959 -0.0017 8 8 3.3084 6.0147 -0.0036 9 7 5.3177 5.0680 -0.0017 10 6 5.9812 6.3741 -0.0022 11 1 5.3839 7.1111 -0.5391 12 6 6.2631 6.8473 1.4482 13 6 7.4814 7.7809 1.2395 14 7 8.2800 7.1294 0.1854 15 6 9.6239 7.2978 -0.0169 16 1 10.1768 6.5761 -0.5996 17 6 10.2752 8.3963 0.5271 18 7 11.5756 8.3577 0.7273 19 14 9.3065 9.9293 0.9750 20 1 8.7254 9.7687 2.3322 21 1 10.2098 11.1078 0.9596 22 1 8.2139 10.1300 -0.0106 23 6 7.3948 6.2681 -0.6122 24 1 7.7408 5.2354 -0.5686 25 6 7.3722 6.7482 -2.0647 26 6 4.0640 2.5078 -0.0048 27 6 3.4352 1.2805 0.0010 28 9 4.1690 0.1461 0.0021 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 0.2087 2.3146 -0.0014 33 1 1.3172 4.5071 -0.0011 34 1 5.8469 4.2551 -0.0013 35 1 5.4134 7.3980 1.8517 36 1 6.5215 6.0054 2.0905 37 1 8.0605 7.8604 2.1596 38 1 7.1537 8.7675 0.9120 39 1 12.0308 9.1251 1.1078 40 1 7.0426 7.7867 -2.0991 41 1 8.3733 6.6706 -2.4887 42 1 6.6845 6.1295 -2.6412 43 1 5.1426 2.5630 -0.0086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088636183.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:30 Heat of formation + Delta-G solvation = -80.894324 kcal Electronic energy + Delta-G solvation = -26918.594970 eV Core-core repulsion = 22878.825142 eV Total energy + Delta-G solvation = -4039.769829 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.90313 -41.57867 -40.74927 -39.50687 -38.06577 -35.71784 -34.13369 -32.25554 -32.12771 -31.69164 -30.67876 -28.41727 -26.65303 -25.85801 -24.52901 -23.79319 -22.71283 -21.66337 -21.28374 -19.63513 -18.85826 -18.72887 -18.09865 -17.36749 -17.28576 -17.25274 -16.91603 -16.16329 -16.07149 -15.85843 -15.82433 -15.51071 -15.22369 -15.18963 -14.62008 -14.42799 -14.06818 -13.97216 -13.61551 -13.48720 -13.30249 -13.21379 -12.95448 -12.90744 -12.58940 -12.45708 -12.22979 -12.17584 -12.08307 -12.03007 -11.60769 -11.48423 -11.10331 -10.80383 -10.17853 -10.08754 -9.36708 -9.07612 -8.16060 -5.42466 -0.36653 -0.00171 1.31088 1.40110 1.47602 1.65959 1.98861 2.06978 2.42373 2.60224 3.02458 3.05906 3.28887 3.51364 3.60007 3.68271 3.75834 3.90329 3.99074 4.13263 4.29518 4.31511 4.36150 4.40267 4.43650 4.53382 4.61428 4.73704 4.75187 4.81278 4.83675 4.88700 4.98232 4.99766 5.07391 5.13063 5.18415 5.35195 5.40661 5.53804 5.70735 6.12609 6.14922 6.46942 6.76118 7.12805 7.54947 8.10283 9.03486 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027553 B = 0.002668 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.964496 B =10492.731464 C =11003.476287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.326 6.326 3 C 0.122 3.878 4 C -0.180 4.180 5 C -0.025 4.025 6 C -0.155 4.155 7 C 0.567 3.433 8 O -0.570 6.570 9 N -0.701 5.701 10 C 0.150 3.850 11 H 0.094 0.906 12 C -0.128 4.128 13 C 0.104 3.896 14 N -0.617 5.617 15 C -0.220 4.220 16 H 0.066 0.934 17 C -0.035 4.035 18 N -0.955 5.955 19 Si 0.938 3.062 20 H -0.271 1.271 21 H -0.311 1.311 22 H -0.272 1.272 23 C 0.149 3.851 24 H 0.059 0.941 25 C -0.149 4.149 26 C -0.074 4.074 27 C 0.040 3.960 28 F -0.140 7.140 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.121 0.879 32 H 0.178 0.822 33 H 0.152 0.848 34 H 0.412 0.588 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.046 0.954 38 H 0.022 0.978 39 H 0.261 0.739 40 H 0.040 0.960 41 H 0.043 0.957 42 H 0.074 0.926 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.727 -16.688 -1.407 31.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.239 6.239 3 C 0.074 3.926 4 C -0.199 4.199 5 C -0.044 4.044 6 C -0.158 4.158 7 C 0.356 3.644 8 O -0.451 6.451 9 N -0.353 5.353 10 C 0.044 3.956 11 H 0.112 0.888 12 C -0.167 4.167 13 C -0.021 4.021 14 N -0.343 5.343 15 C -0.348 4.348 16 H 0.084 0.916 17 C -0.230 4.230 18 N -0.602 5.602 19 Si 0.767 3.233 20 H -0.197 1.197 21 H -0.239 1.239 22 H -0.197 1.197 23 C 0.043 3.957 24 H 0.076 0.924 25 C -0.208 4.208 26 C -0.093 4.093 27 C 0.020 3.980 28 F -0.119 7.119 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.139 0.861 32 H 0.195 0.805 33 H 0.170 0.830 34 H 0.250 0.750 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.064 0.936 38 H 0.040 0.960 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.092 0.908 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -26.865 -16.142 -1.383 31.372 hybrid contribution 0.703 0.667 0.170 0.984 sum -26.162 -15.475 -1.213 30.420 Atomic orbital electron populations 1.23555 0.75088 1.06296 1.03261 1.86110 1.24643 1.25615 1.87527 1.19442 0.90694 0.86606 0.95861 1.21381 1.02119 0.89601 1.06774 1.21297 0.92648 0.98839 0.91616 1.19528 0.94738 0.91315 1.10259 1.18263 0.81935 0.88821 0.75386 1.90770 1.65222 1.37354 1.51722 1.45765 1.06164 1.09171 1.74180 1.21792 0.92277 0.85317 0.96219 0.88837 1.23056 0.96935 0.99773 0.96944 1.22018 0.92628 0.95336 0.92114 1.44886 1.04267 1.52927 1.32239 1.18502 0.81546 1.04893 1.29899 0.91612 1.25550 0.95855 1.00622 1.00963 1.69950 1.09899 1.31407 1.48947 0.86080 0.77606 0.80710 0.78876 1.19738 1.23947 1.19739 1.21284 0.88347 0.95065 0.90987 0.92360 1.22120 1.01286 1.00689 0.96742 1.21250 1.01761 0.89179 0.97112 1.16966 0.86689 0.82774 1.11566 1.91503 1.76823 1.48958 1.94592 0.90623 0.90589 0.86114 0.80492 0.83012 0.74967 0.89661 0.89680 0.93589 0.96032 0.92989 0.94090 0.93783 0.90752 0.82099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.81 113.37 1.11 1.17 16 2 O -0.33 -4.96 10.35 -90.83 -0.94 -5.90 16 3 C 0.12 1.98 6.70 22.66 0.15 2.13 16 4 C -0.18 -2.19 9.01 22.32 0.20 -1.99 16 5 C -0.02 -0.40 9.58 22.51 0.22 -0.18 16 6 C -0.15 -2.99 5.87 -20.08 -0.12 -3.11 16 7 C 0.57 14.08 7.76 86.71 0.67 14.76 16 8 O -0.57 -17.96 15.98 -3.96 -0.06 -18.03 16 9 N -0.70 -16.72 5.13 -440.01 -2.26 -18.98 16 10 C 0.15 4.57 2.84 46.18 0.13 4.70 16 11 H 0.09 3.07 7.26 -2.39 -0.02 3.05 16 12 C -0.13 -4.12 6.77 31.98 0.22 -3.90 16 13 C 0.10 4.36 4.70 86.85 0.41 4.77 16 14 N -0.62 -28.37 2.94 -668.27 -1.96 -30.34 16 15 C -0.22 -12.26 10.19 84.03 0.86 -11.40 16 16 H 0.07 3.95 8.06 -2.92 -0.02 3.92 16 17 C -0.04 -2.07 5.43 84.86 0.46 -1.61 16 18 N -0.95 -59.95 13.97 21.65 0.30 -59.65 16 19 Si 0.94 47.15 24.27 68.60 1.66 48.81 16 20 H -0.27 -12.88 6.49 99.48 0.65 -12.24 16 21 H -0.31 -15.90 7.11 99.48 0.71 -15.19 16 22 H -0.27 -13.32 6.66 99.48 0.66 -12.65 16 23 C 0.15 5.34 3.48 45.34 0.16 5.49 16 24 H 0.06 1.96 7.71 -2.38 -0.02 1.95 16 25 C -0.15 -5.12 9.13 71.98 0.66 -4.46 16 26 C -0.07 -1.28 9.51 22.55 0.21 -1.06 16 27 C 0.04 0.76 7.30 22.41 0.16 0.93 16 28 F -0.14 -3.12 17.10 44.97 0.77 -2.35 16 29 H 0.08 0.19 7.65 -2.39 -0.02 0.18 16 30 H 0.08 0.19 7.65 -2.39 -0.02 0.17 16 31 H 0.12 0.24 8.14 -2.39 -0.02 0.23 16 32 H 0.18 0.91 6.27 -2.91 -0.02 0.89 16 33 H 0.15 2.30 7.64 -2.91 -0.02 2.28 16 34 H 0.41 7.80 6.39 -92.71 -0.59 7.20 16 35 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.05 2.07 6.64 -2.38 -0.02 2.05 16 38 H 0.02 0.95 5.57 -2.39 -0.01 0.94 16 39 H 0.26 15.68 8.31 -92.71 -0.77 14.90 16 40 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.04 1.65 8.04 -2.39 -0.02 1.63 16 42 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.16 2.22 6.39 -2.91 -0.02 2.20 16 Total: -1.00 -73.53 352.39 3.37 -70.16 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 0.35 Total: 10.05 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: 5.50 Total: 6.21 kcal Atomic # 7 Polarization: -105.05 SS G_CDS: -3.92 Total: -108.96 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -1.00 Total: -23.93 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.77 Total: -2.35 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.66 Total: 48.81 kcal Total: -73.53 3.37 -70.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088636183.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.731 kcal (2) G-P(sol) polarization free energy of solvation -73.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds