Wall clock time and date at job start Tue Mar 31 2020 14:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35712 * 116.99778 * 2 1 4 4 C 1.39092 * 119.88432 * 180.02562 * 3 2 1 5 5 C 1.37609 * 120.16198 * 180.02562 * 4 3 2 6 6 C 1.39817 * 119.93177 * 359.97438 * 5 4 3 7 7 C 1.47453 * 120.10944 * 180.02562 * 6 5 4 8 8 O 1.21599 * 119.99739 * 179.97438 * 7 6 5 9 9 N 1.34779 * 119.99888 * 359.97438 * 7 6 5 10 10 C 1.46495 * 119.99676 * 180.02562 * 9 7 6 11 11 H 1.09001 * 110.64416 * 328.13889 * 10 9 7 12 12 C 1.55159 * 110.72222 * 91.47940 * 10 9 7 13 13 C 1.54904 * 101.58364 * 153.86621 * 12 10 9 14 14 N 1.47422 * 104.83214 * 322.98728 * 13 12 10 15 15 C 1.36939 * 125.65236 * 204.16587 * 14 13 12 16 16 H 1.08002 * 120.00452 * 179.97438 * 15 14 13 17 17 C 1.38813 * 119.99733 * 359.96263 * 15 14 13 18 18 N 1.31620 * 120.00053 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99990 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47163 * 89.99869 * 19 17 15 21 21 H 1.48504 * 109.47303 * 209.99996 * 19 17 15 22 22 H 1.48504 * 109.47077 * 329.99721 * 19 17 15 23 23 C 1.47020 * 108.70181 * 24.13311 * 14 13 12 24 24 H 1.09009 * 109.88047 * 239.52143 * 23 14 13 25 25 C 1.52997 * 110.01416 * 118.43003 * 23 14 13 26 26 C 1.39979 * 119.77904 * 0.02562 * 6 5 4 27 27 F 1.35104 * 120.08080 * 180.02562 * 26 6 5 28 28 C 1.38063 * 119.84326 * 0.27502 * 26 6 5 29 29 H 1.09001 * 109.46801 * 299.99773 * 1 2 3 30 30 H 1.08992 * 109.47400 * 59.99720 * 1 2 3 31 31 H 1.09001 * 109.47286 * 180.02562 * 1 2 3 32 32 H 1.08000 * 119.92284 * 0.02562 * 4 3 2 33 33 H 1.08000 * 120.03354 * 179.97438 * 5 4 3 34 34 H 0.96995 * 120.00086 * 0.02562 * 9 7 6 35 35 H 1.09002 * 111.00067 * 271.94182 * 12 10 9 36 36 H 1.09004 * 111.00228 * 35.78393 * 12 10 9 37 37 H 1.09003 * 110.36666 * 204.15654 * 13 12 10 38 38 H 1.09000 * 110.46419 * 81.87702 * 13 12 10 39 39 H 0.96999 * 120.00245 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.47212 * 302.11392 * 25 23 14 41 41 H 1.09001 * 109.47442 * 62.11352 * 25 23 14 42 42 H 1.08999 * 109.47325 * 182.11747 * 25 23 14 43 43 H 1.07992 * 119.97363 * 179.72592 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4343 1.2793 -0.0005 5 6 4.0649 2.5024 0.0000 6 6 3.3077 3.6777 0.0005 7 6 3.9793 4.9904 0.0005 8 8 3.3188 6.0113 0.0005 9 7 5.3254 5.0586 0.0005 10 6 5.9927 6.3628 0.0011 11 1 5.3964 7.0997 -0.5370 12 6 6.2761 6.8338 1.4520 13 6 7.4971 7.7642 1.2441 14 7 8.2937 7.1113 0.1893 15 6 9.6380 7.2761 -0.0129 16 1 10.1316 6.7503 -0.8169 17 6 10.3662 8.1191 0.8152 18 7 9.7645 8.7605 1.7945 19 14 12.2001 8.3434 0.5398 20 1 12.4255 9.4748 -0.3953 21 1 12.8637 8.6332 1.8364 22 1 12.7692 7.1005 -0.0405 23 6 7.4060 6.2533 -0.6090 24 1 7.7502 5.2200 -0.5639 25 6 7.3838 6.7312 -2.0622 26 6 1.9098 3.6041 0.0011 27 9 1.1721 4.7360 0.0011 28 6 1.2867 2.3721 0.0068 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 4.0195 0.3716 -0.0014 33 1 5.1437 2.5543 0.0000 34 1 5.8523 4.2442 0.0002 35 1 5.4279 7.3866 1.8560 36 1 6.5321 5.9905 2.0936 37 1 8.0765 7.8411 2.1642 38 1 7.1722 8.7520 0.9175 39 1 10.2735 9.3493 2.3734 40 1 7.0562 7.7702 -2.0982 41 1 8.3847 6.6510 -2.4864 42 1 6.6948 6.1129 -2.6376 43 1 0.2084 2.3129 0.0117 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088712545.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:35 Heat of formation + Delta-G solvation = -59.522178 kcal Electronic energy + Delta-G solvation = -26993.746287 eV Core-core repulsion = 22954.903224 eV Total energy + Delta-G solvation = -4038.843063 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.02962 -40.64753 -39.64515 -37.81464 -37.04036 -34.07395 -32.19115 -31.15289 -30.80036 -30.31028 -28.55010 -27.85600 -25.05575 -23.99992 -23.40722 -22.92745 -20.76910 -20.17738 -19.76960 -18.90146 -17.69567 -17.17534 -16.77612 -16.40719 -16.23710 -15.76383 -15.65246 -15.11382 -14.80406 -14.68111 -14.43222 -14.11386 -13.91076 -13.48291 -13.32629 -12.90159 -12.80251 -12.72106 -12.19608 -12.12933 -11.96745 -11.71435 -11.54543 -11.36018 -11.13371 -10.86504 -10.82925 -10.55815 -10.41873 -10.09584 -9.76740 -9.71262 -9.55068 -9.37325 -8.79054 -8.66020 -8.51963 -6.87661 -5.65488 -3.08466 0.49988 0.77251 2.67385 2.71021 3.25581 3.39643 3.44662 3.46505 3.53730 3.85368 4.23099 4.45660 4.47534 4.60699 4.66344 4.67141 4.75448 4.99793 5.01848 5.28513 5.42325 5.55247 5.56150 5.60429 5.63914 5.71581 5.76184 5.84214 6.12734 6.18193 6.25678 6.32218 6.35816 6.53964 6.61169 6.73014 6.78491 6.87292 7.11375 7.52449 7.62476 7.69576 7.85537 8.33842 8.38564 9.20440 9.81391 10.45325 11.37800 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027115 B = 0.002582 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.377610 B =10840.189301 C =11289.894799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.307 6.307 3 C 0.179 3.821 4 C -0.169 4.169 5 C -0.017 4.017 6 C -0.206 4.206 7 C 0.558 3.442 8 O -0.531 6.531 9 N -0.709 5.709 10 C 0.135 3.865 11 H 0.095 0.905 12 C -0.153 4.153 13 C 0.152 3.848 14 N -0.595 5.595 15 C -0.220 4.220 16 H 0.078 0.922 17 C -0.011 4.011 18 N -0.921 5.921 19 Si 0.914 3.086 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.155 3.845 24 H 0.035 0.965 25 C -0.155 4.155 26 C 0.201 3.799 27 F -0.110 7.110 28 C -0.261 4.261 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.396 0.604 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.109 0.891 38 H 0.015 0.985 39 H 0.252 0.748 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.038 0.962 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.254 -18.272 -3.392 25.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.220 6.220 3 C 0.133 3.867 4 C -0.188 4.188 5 C -0.036 4.036 6 C -0.210 4.210 7 C 0.345 3.655 8 O -0.408 6.408 9 N -0.360 5.360 10 C 0.031 3.969 11 H 0.113 0.887 12 C -0.193 4.193 13 C 0.027 3.973 14 N -0.320 5.320 15 C -0.348 4.348 16 H 0.095 0.905 17 C -0.206 4.206 18 N -0.569 5.569 19 Si 0.745 3.255 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.047 3.953 24 H 0.053 0.947 25 C -0.215 4.215 26 C 0.180 3.820 27 F -0.088 7.088 28 C -0.281 4.281 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.123 0.877 32 H 0.163 0.837 33 H 0.164 0.836 34 H 0.231 0.769 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.127 0.873 38 H 0.033 0.967 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.057 0.943 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -17.474 -17.545 -3.292 24.980 hybrid contribution 0.737 0.102 -0.208 0.773 sum -16.737 -17.443 -3.500 24.426 Atomic orbital electron populations 1.23193 0.77637 1.04519 1.01946 1.86082 1.22068 1.26246 1.87578 1.18936 0.92118 0.83703 0.91979 1.20409 0.91123 0.99021 1.08257 1.21064 1.00200 0.89976 0.92374 1.20074 0.92379 0.95122 1.13470 1.17815 0.82554 0.87994 0.77168 1.90837 1.64653 1.35739 1.49590 1.45939 1.05667 1.09964 1.74437 1.22196 0.93169 0.83452 0.98109 0.88663 1.23403 1.00236 1.00734 0.94891 1.21953 0.88337 0.91299 0.95665 1.44488 1.04037 1.50937 1.32552 1.19019 0.81882 1.22117 1.11807 0.90451 1.24794 0.98323 0.99337 0.98175 1.69796 1.33976 1.32886 1.20244 0.86082 0.84661 0.77834 0.76947 1.21657 1.21685 1.20726 1.20990 0.88448 0.94909 0.90945 0.94701 1.22241 1.00815 1.00867 0.97586 1.17328 0.87793 0.82016 0.94836 1.91617 1.76126 1.48714 1.92340 1.21116 1.01451 0.90829 1.14677 0.92110 0.92117 0.87711 0.83746 0.83638 0.76869 0.91957 0.91934 0.87308 0.96710 0.93687 0.92898 0.92706 0.94304 0.83609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.31 -2.40 10.48 -18.84 -0.20 -2.60 16 3 C 0.18 1.60 6.69 -39.04 -0.26 1.34 16 4 C -0.17 -1.42 9.96 -39.49 -0.39 -1.81 16 5 C -0.02 -0.16 9.53 -39.22 -0.37 -0.54 16 6 C -0.21 -2.62 5.88 -104.90 -0.62 -3.24 16 7 C 0.56 8.94 7.76 -12.51 -0.10 8.84 16 8 O -0.53 -10.60 14.97 5.28 0.08 -10.52 16 9 N -0.71 -10.62 5.13 -53.10 -0.27 -10.90 16 10 C 0.14 2.49 2.85 -66.10 -0.19 2.30 16 11 H 0.10 1.90 7.25 -51.93 -0.38 1.53 16 12 C -0.15 -3.06 6.77 -24.58 -0.17 -3.23 16 13 C 0.15 3.72 5.89 -2.53 -0.01 3.70 16 14 N -0.59 -14.73 3.13 -162.57 -0.51 -15.24 16 15 C -0.22 -5.94 9.90 -15.06 -0.15 -6.09 16 16 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 17 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 18 N -0.92 -26.58 10.09 55.49 0.56 -26.02 16 19 Si 0.91 21.80 29.55 -169.99 -5.02 16.77 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 C 0.16 3.09 3.47 -66.96 -0.23 2.86 16 24 H 0.04 0.67 7.72 -51.92 -0.40 0.27 16 25 C -0.16 -2.89 9.14 37.16 0.34 -2.55 16 26 C 0.20 2.54 7.28 -38.99 -0.28 2.26 16 27 F -0.11 -1.65 15.54 2.25 0.03 -1.62 16 28 C -0.26 -2.49 8.99 -39.42 -0.35 -2.85 16 29 H 0.06 0.23 7.64 -51.93 -0.40 -0.17 16 30 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 31 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.15 1.02 6.39 -52.49 -0.34 0.69 16 34 H 0.40 4.75 6.39 -40.82 -0.26 4.49 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.11 2.96 5.87 -51.93 -0.31 2.66 16 38 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.05 1.04 8.05 -51.93 -0.42 0.62 16 42 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.15 1.05 6.27 -52.49 -0.33 0.73 16 LS Contribution 355.91 15.07 5.36 5.36 Total: -1.00 -33.08 355.91 -7.59 -40.67 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.73 Total: 2.40 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -1.90 Total: 1.69 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.22 Total: -52.15 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -0.12 Total: -13.12 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.03 Total: -1.62 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.08 -7.59 -40.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088712545.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.854 kcal (2) G-P(sol) polarization free energy of solvation -33.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds