Wall clock time and date at job start Tue Mar 31 2020 14:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35696 * 117.00301 * 2 1 4 4 C 1.38690 * 120.12379 * 359.97354 * 3 2 1 5 5 C 1.38055 * 120.11359 * 180.02562 * 4 3 2 6 6 C 1.38732 * 120.36520 * 359.97438 * 5 4 3 7 7 F 1.35103 * 119.87505 * 179.97438 * 6 5 4 8 8 C 1.37986 * 120.24743 * 359.76625 * 6 5 4 9 9 C 1.39717 * 119.88222 * 0.50761 * 8 6 5 10 10 C 1.47531 * 120.18083 * 179.74761 * 9 8 6 11 11 O 1.21591 * 120.00330 * 179.73175 * 10 9 8 12 12 N 1.34776 * 120.00082 * 359.72109 * 10 9 8 13 13 C 1.46502 * 120.00269 * 180.02562 * 12 10 9 14 14 H 1.09003 * 110.77571 * 323.21752 * 13 12 10 15 15 C 1.55153 * 110.72163 * 86.45557 * 13 12 10 16 16 C 1.54914 * 101.61592 * 153.88641 * 15 13 12 17 17 N 1.47420 * 104.82906 * 322.97121 * 16 15 13 18 18 C 1.36940 * 125.64595 * 204.16338 * 17 16 15 19 19 H 1.07997 * 119.99801 * 169.82896 * 18 17 16 20 20 C 1.38817 * 119.99970 * 349.82920 * 18 17 16 21 21 N 1.31618 * 119.99610 * 350.47893 * 20 18 17 22 22 Si 1.86791 * 119.99937 * 170.47910 * 20 18 17 23 23 H 1.48502 * 109.47028 * 94.13766 * 22 20 18 24 24 H 1.48497 * 109.47230 * 214.13656 * 22 20 18 25 25 H 1.48506 * 109.47338 * 334.13707 * 22 20 18 26 26 C 1.47023 * 108.70562 * 24.13181 * 17 16 15 27 27 H 1.09000 * 109.88048 * 239.36621 * 26 17 16 28 28 C 1.52999 * 109.88291 * 118.35680 * 26 17 16 29 29 H 1.08992 * 109.47480 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46874 * 300.00828 * 1 2 3 31 31 H 1.09003 * 109.46744 * 59.99669 * 1 2 3 32 32 H 1.08002 * 119.94106 * 0.02562 * 4 3 2 33 33 H 1.07998 * 119.81755 * 180.02562 * 5 4 3 34 34 H 1.08006 * 120.05859 * 180.26213 * 8 6 5 35 35 H 0.97000 * 119.99728 * 0.02562 * 12 10 9 36 36 H 1.08997 * 111.00382 * 35.79119 * 15 13 12 37 37 H 1.09000 * 111.00255 * 271.98042 * 15 13 12 38 38 H 1.08992 * 110.36234 * 81.81115 * 16 15 13 39 39 H 1.08998 * 110.36103 * 204.13293 * 16 15 13 40 40 H 0.97000 * 119.99533 * 179.97438 * 21 20 18 41 41 H 1.09005 * 109.47027 * 61.45005 * 28 26 17 42 42 H 1.09000 * 109.47133 * 181.45390 * 28 26 17 43 43 H 1.08999 * 109.47114 * 301.45091 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 1.2923 2.3738 -0.0006 5 6 1.9194 3.6038 -0.0011 6 6 3.3043 3.6849 -0.0005 7 9 3.9076 4.8937 -0.0016 8 6 4.0679 2.5356 0.0054 9 6 3.4441 1.2854 0.0002 10 6 4.2542 0.0524 0.0009 11 8 3.7079 -1.0339 0.0012 12 7 5.5997 0.1300 0.0009 13 6 6.4041 -1.0944 0.0010 14 1 5.9342 -1.8657 0.6113 15 6 6.6306 -1.6026 -1.4473 16 6 7.9579 -2.3875 -1.2986 17 7 8.7539 -1.6036 -0.3367 18 6 10.1194 -1.6153 -0.2341 19 1 10.6205 -0.8879 0.3873 20 6 10.8596 -2.5621 -0.9289 21 7 10.2500 -3.5599 -1.5332 22 14 12.7205 -2.4201 -1.0060 23 1 13.3245 -3.2350 0.0786 24 1 13.2005 -2.9137 -2.3217 25 1 13.1160 -0.9988 -0.8362 26 6 7.8391 -0.8066 0.4936 27 1 8.0659 0.2537 0.3822 28 6 7.9775 -1.2167 1.9611 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 0.2137 2.3186 -0.0006 33 1 1.3285 4.5078 -0.0011 34 1 5.1459 2.6023 0.0101 35 1 6.0355 0.9966 0.0008 36 1 6.7450 -0.7692 -2.1404 37 1 5.8206 -2.2609 -1.7615 38 1 7.7660 -3.3864 -0.9071 39 1 8.4727 -2.4472 -2.2574 40 1 10.7672 -4.2213 -2.0190 41 1 8.9959 -1.0229 2.2980 42 1 7.2783 -0.6403 2.5670 43 1 7.7569 -2.2792 2.0638 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088781703.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:43 Heat of formation + Delta-G solvation = -59.310453 kcal Electronic energy + Delta-G solvation = -27229.408103 eV Core-core repulsion = 23190.574221 eV Total energy + Delta-G solvation = -4038.833882 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.08963 -40.76327 -39.22371 -37.60145 -37.19956 -34.02110 -32.36770 -31.44163 -30.34428 -30.06298 -28.60527 -27.49611 -25.27151 -24.00021 -23.80348 -22.44167 -20.83815 -20.11151 -19.83119 -18.54958 -17.76839 -17.29169 -16.68718 -16.20409 -16.15072 -15.66204 -15.65305 -15.11068 -14.76967 -14.65660 -14.48923 -14.01677 -13.80670 -13.39338 -13.24626 -13.10013 -12.78101 -12.61944 -12.21126 -12.07913 -12.00478 -11.54705 -11.49515 -11.23892 -11.08828 -10.91382 -10.75071 -10.52860 -10.35673 -10.04420 -9.82415 -9.67569 -9.58690 -9.57284 -8.67089 -8.55537 -8.39616 -6.82418 -5.73590 -3.07087 0.42528 0.83992 2.71472 2.93657 3.26438 3.40218 3.46196 3.47974 3.57626 3.91364 4.24804 4.29601 4.50164 4.64464 4.78301 4.85706 4.87245 5.12603 5.19880 5.24552 5.37595 5.44558 5.54493 5.55145 5.62733 5.67366 5.74682 5.85224 6.15344 6.25865 6.27979 6.34617 6.37915 6.55019 6.64805 6.73236 6.91839 7.01724 7.15193 7.52208 7.60683 7.74032 7.79820 8.25993 8.43476 9.19273 9.81300 10.48225 11.39063 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019706 B = 0.002962 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.581896 B = 9451.604485 C =10353.897215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.274 6.274 3 C 0.176 3.824 4 C -0.193 4.193 5 C -0.089 4.089 6 C 0.052 3.948 7 F -0.138 7.138 8 C -0.081 4.081 9 C -0.138 4.138 10 C 0.558 3.442 11 O -0.515 6.515 12 N -0.713 5.713 13 C 0.138 3.862 14 H 0.094 0.906 15 C -0.154 4.154 16 C 0.174 3.826 17 N -0.594 5.594 18 C -0.227 4.227 19 H 0.076 0.924 20 C -0.006 4.006 21 N -0.916 5.916 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.155 3.845 27 H 0.035 0.965 28 C -0.155 4.155 29 H 0.104 0.896 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.395 0.605 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.029 0.971 39 H 0.071 0.929 40 H 0.253 0.747 41 H 0.055 0.945 42 H 0.037 0.963 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.341 13.718 3.155 24.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.185 6.185 3 C 0.127 3.873 4 C -0.212 4.212 5 C -0.108 4.108 6 C 0.032 3.968 7 F -0.117 7.117 8 C -0.101 4.101 9 C -0.142 4.142 10 C 0.344 3.656 11 O -0.391 6.391 12 N -0.364 5.364 13 C 0.034 3.966 14 H 0.112 0.888 15 C -0.194 4.194 16 C 0.049 3.951 17 N -0.319 5.319 18 C -0.355 4.355 19 H 0.094 0.906 20 C -0.203 4.203 21 N -0.563 5.563 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.047 3.953 27 H 0.053 0.947 28 C -0.214 4.214 29 H 0.123 0.877 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.162 0.838 33 H 0.159 0.841 34 H 0.165 0.835 35 H 0.230 0.770 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.047 0.953 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.056 0.944 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.435 12.606 3.062 24.205 hybrid contribution 1.076 0.875 -0.013 1.387 sum -19.359 13.481 3.049 23.787 Atomic orbital electron populations 1.23209 0.78601 1.04639 1.01138 1.86440 1.20805 1.24816 1.86395 1.19060 0.90941 0.85168 0.92149 1.21092 1.00705 0.90995 1.08433 1.21076 0.92718 0.98822 0.98178 1.17340 0.90868 0.80504 1.08048 1.91521 1.83652 1.42070 1.94408 1.21207 1.00928 0.89983 0.97970 1.19303 0.90990 0.93734 1.10196 1.17763 0.82171 0.88168 0.77540 1.90833 1.71489 1.28257 1.48531 1.45990 1.05529 1.10143 1.74773 1.22144 0.90739 0.85549 0.98157 0.88802 1.23399 1.00312 1.00536 0.95164 1.21408 0.86433 0.92159 0.95089 1.44492 1.01477 1.49883 1.36082 1.18958 0.79832 1.11246 1.25509 0.90629 1.24824 0.98016 0.96263 1.01171 1.69962 1.33857 1.13784 1.38656 0.86145 0.85256 0.77486 0.77095 1.21653 1.21656 1.20625 1.21031 0.88005 0.95377 0.90899 0.94716 1.22238 1.00840 1.01063 0.97298 0.87725 0.92525 0.92499 0.83814 0.84052 0.83492 0.76985 0.92036 0.91727 0.95283 0.91057 0.93683 0.92628 0.94425 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.13 16 2 O -0.27 -3.43 8.57 -40.69 -0.35 -3.78 16 3 C 0.18 2.04 6.70 -38.71 -0.26 1.78 16 4 C -0.19 -1.59 9.03 -39.48 -0.36 -1.95 16 5 C -0.09 -0.71 10.01 -39.47 -0.39 -1.10 16 6 C 0.05 0.51 7.28 -39.49 -0.29 0.22 16 7 F -0.14 -1.43 17.26 2.25 0.04 -1.40 16 8 C -0.08 -0.85 9.51 -39.12 -0.37 -1.23 16 9 C -0.14 -1.76 5.88 -104.85 -0.62 -2.38 16 10 C 0.56 8.85 7.76 -12.47 -0.10 8.75 16 11 O -0.52 -9.98 14.89 -16.61 -0.25 -10.23 16 12 N -0.71 -10.79 5.16 -53.02 -0.27 -11.06 16 13 C 0.14 2.55 2.76 -66.04 -0.18 2.37 16 14 H 0.09 1.86 7.41 -51.93 -0.38 1.47 16 15 C -0.15 -3.08 6.76 -24.58 -0.17 -3.24 16 16 C 0.17 4.25 5.42 -2.53 -0.01 4.23 16 17 N -0.59 -14.80 3.13 -162.52 -0.51 -15.31 16 18 C -0.23 -6.19 9.84 -15.06 -0.15 -6.33 16 19 H 0.08 1.99 7.85 -52.49 -0.41 1.58 16 20 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 21 N -0.92 -26.75 10.69 55.49 0.59 -26.16 16 22 Si 0.91 21.90 29.56 -169.99 -5.03 16.88 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.15 3.11 3.48 -66.90 -0.23 2.88 16 27 H 0.04 0.67 7.70 -51.93 -0.40 0.27 16 28 C -0.15 -2.93 9.14 37.16 0.34 -2.59 16 29 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 31 H 0.06 0.30 7.66 -51.93 -0.40 -0.09 16 32 H 0.14 0.76 6.29 -52.49 -0.33 0.43 16 33 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 34 H 0.15 1.31 6.40 -52.48 -0.34 0.97 16 35 H 0.39 4.95 6.35 -40.82 -0.26 4.69 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 39 H 0.07 1.92 6.94 -51.93 -0.36 1.56 16 40 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.05 1.09 8.03 -51.93 -0.42 0.67 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 356.79 15.07 5.38 5.38 Total: -1.00 -33.14 356.79 -8.07 -41.21 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -5.79 Total: 2.20 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -1.89 Total: 2.27 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: -0.19 Total: -52.53 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.60 Total: -14.01 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.14 -8.07 -41.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088781703.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.098 kcal (2) G-P(sol) polarization free energy of solvation -33.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds