Wall clock time and date at job start Tue Mar 31 2020 14:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47174 * 2 1 4 4 C 1.50703 * 109.46684 * 119.99656 * 2 1 3 5 5 C 1.37474 * 123.35732 * 305.22212 * 4 2 1 6 6 C 1.33812 * 115.10375 * 180.29454 * 5 4 2 7 7 S 1.70612 * 110.95477 * 359.73091 * 6 5 4 8 8 C 1.36648 * 123.35005 * 125.00395 * 4 2 1 9 9 C 1.46587 * 125.45883 * 0.02562 * 8 4 2 10 10 O 1.21705 * 119.99752 * 354.32913 * 9 8 4 11 11 N 1.34772 * 120.00123 * 174.34093 * 9 8 4 12 12 C 1.46495 * 120.00135 * 179.97438 * 11 9 8 13 13 H 1.09003 * 110.64157 * 323.30942 * 12 11 9 14 14 C 1.55162 * 110.72202 * 86.44848 * 12 11 9 15 15 C 1.54917 * 101.58141 * 153.86773 * 14 12 11 16 16 N 1.47426 * 104.83078 * 322.99073 * 15 14 12 17 17 C 1.36936 * 125.64764 * 204.09143 * 16 15 14 18 18 H 1.07997 * 120.00191 * 180.02562 * 17 16 15 19 19 C 1.38811 * 119.99877 * 359.75376 * 17 16 15 20 20 N 1.31618 * 119.99786 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99781 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47516 * 359.97438 * 21 19 17 23 23 H 1.48508 * 109.47181 * 119.99857 * 21 19 17 24 24 H 1.48504 * 109.46889 * 239.99652 * 21 19 17 25 25 C 1.47024 * 108.70392 * 24.35885 * 16 15 14 26 26 H 1.09002 * 109.88140 * 239.29156 * 25 16 15 27 27 C 1.52996 * 109.88472 * 118.13155 * 25 16 15 28 28 H 1.08998 * 109.47528 * 300.00806 * 1 2 3 29 29 H 1.09010 * 109.46542 * 60.00350 * 1 2 3 30 30 H 1.08994 * 109.47358 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47756 * 239.99602 * 2 1 3 32 32 H 1.08993 * 109.47093 * 299.99315 * 3 2 1 33 33 H 1.08997 * 109.46914 * 59.99613 * 3 2 1 34 34 H 1.09002 * 109.46885 * 179.97438 * 3 2 1 35 35 H 1.07999 * 122.43995 * 359.97438 * 5 4 2 36 36 H 1.07999 * 124.52251 * 179.74910 * 6 5 4 37 37 H 0.97004 * 119.99960 * 359.97438 * 11 9 8 38 38 H 1.08993 * 111.00135 * 35.79727 * 14 12 11 39 39 H 1.08995 * 111.00325 * 271.93825 * 14 12 11 40 40 H 1.09001 * 110.36100 * 204.15407 * 15 14 12 41 41 H 1.08996 * 110.36375 * 81.82875 * 15 14 12 42 42 H 0.97006 * 119.99721 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.47365 * 61.44981 * 27 25 16 44 44 H 1.09003 * 109.47288 * 181.45581 * 27 25 16 45 45 H 1.09004 * 109.46608 * 301.45057 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2306 5 6 1.6597 -0.3646 2.5079 6 6 2.2103 -1.1023 3.4791 7 16 3.2394 -2.2975 2.8286 8 6 2.8999 -1.7651 1.1875 9 6 3.4629 -2.3540 -0.0311 10 8 3.0854 -1.9705 -1.1227 11 7 4.3984 -3.3201 0.0573 12 6 4.9606 -3.9090 -1.1605 13 1 4.1958 -4.0000 -1.9318 14 6 6.1601 -3.0689 -1.6733 15 6 6.9778 -4.1338 -2.4462 16 7 6.8375 -5.3674 -1.6513 17 6 7.7121 -6.4211 -1.6520 18 1 7.5189 -7.2837 -1.0317 19 6 8.8442 -6.3828 -2.4544 20 7 9.0767 -5.3339 -3.2148 21 14 10.0377 -7.8198 -2.4548 22 1 9.5523 -8.8668 -1.5202 23 1 10.1324 -8.3842 -3.8252 24 1 11.3775 -7.3505 -2.0190 25 6 5.5997 -5.2818 -0.8625 26 1 5.8312 -5.3582 0.1999 27 6 4.6434 -6.4039 -1.2715 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.6768 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4425 0.0005 35 1 0.9768 0.4466 2.7127 36 1 2.0273 -0.9603 4.5340 37 1 4.6993 -3.6256 0.9274 38 1 6.7357 -2.6619 -0.8421 39 1 5.8242 -2.2747 -2.3400 40 1 8.0252 -3.8379 -2.5059 41 1 6.5656 -4.2771 -3.4450 42 1 9.8676 -5.3073 -3.7758 43 1 5.1077 -7.3690 -1.0687 44 1 3.7183 -6.3187 -0.7014 45 1 4.4229 -6.3233 -2.3360 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089056224.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:50 Heat of formation + Delta-G solvation = 12.797372 kcal Electronic energy + Delta-G solvation = -25282.592433 eV Core-core repulsion = 21813.098557 eV Total energy + Delta-G solvation = -3469.493876 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.05751 -38.63136 -37.30032 -34.31323 -33.92871 -32.09846 -30.43887 -29.93146 -28.46086 -27.20452 -25.48059 -24.16638 -23.97085 -21.93831 -21.30561 -20.19652 -20.00811 -18.52975 -17.77877 -16.75925 -16.27045 -15.90323 -15.18612 -14.88816 -14.67437 -14.26840 -13.99447 -13.73557 -13.68397 -13.58641 -13.33253 -12.83587 -12.70116 -12.60665 -12.21417 -12.14516 -11.96999 -11.63812 -11.55571 -11.21371 -11.15294 -11.07967 -10.87523 -10.81339 -10.79621 -10.53745 -10.36420 -10.07246 -9.76757 -9.60951 -9.45772 -9.02507 -8.68837 -8.61892 -8.59840 -6.88530 -5.66630 -3.09352 0.40171 1.33985 1.73210 2.25655 3.24911 3.30806 3.38885 3.44638 3.46835 4.47218 4.62441 4.77731 4.87176 4.99495 5.15282 5.22344 5.28293 5.41243 5.48856 5.52999 5.53471 5.57070 5.62414 5.73652 5.80719 5.84403 5.96190 6.01563 6.11000 6.18110 6.19603 6.22854 6.28913 6.32751 6.49211 6.58799 6.63682 6.72183 6.86088 7.09148 7.51225 7.61939 7.65608 7.84392 8.31110 8.35252 9.19548 9.80387 10.44197 11.36965 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022974 B = 0.002985 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.501541 B = 9377.083563 C = 9899.041553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.069 4.069 3 C -0.137 4.137 4 C -0.014 4.014 5 C -0.143 4.143 6 C -0.233 4.233 7 S 0.194 5.806 8 C -0.264 4.264 9 C 0.591 3.409 10 O -0.526 6.526 11 N -0.710 5.710 12 C 0.136 3.864 13 H 0.094 0.906 14 C -0.152 4.152 15 C 0.154 3.846 16 N -0.595 5.595 17 C -0.220 4.220 18 H 0.078 0.922 19 C -0.010 4.010 20 N -0.920 5.920 21 Si 0.914 3.086 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.155 3.845 26 H 0.035 0.965 27 C -0.155 4.155 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.124 0.876 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.142 0.858 36 H 0.167 0.833 37 H 0.394 0.606 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.109 0.891 41 H 0.015 0.985 42 H 0.252 0.748 43 H 0.055 0.945 44 H 0.038 0.962 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.510 10.636 12.698 22.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.089 4.089 3 C -0.195 4.195 4 C -0.029 4.029 5 C -0.175 4.175 6 C -0.370 4.370 7 S 0.462 5.538 8 C -0.385 4.385 9 C 0.377 3.623 10 O -0.406 6.406 11 N -0.360 5.360 12 C 0.032 3.968 13 H 0.112 0.888 14 C -0.192 4.192 15 C 0.029 3.971 16 N -0.320 5.320 17 C -0.348 4.348 18 H 0.096 0.904 19 C -0.206 4.206 20 N -0.568 5.568 21 Si 0.745 3.255 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.047 3.953 26 H 0.053 0.947 27 C -0.215 4.215 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.141 0.859 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.159 0.841 36 H 0.184 0.816 37 H 0.229 0.771 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.127 0.873 41 H 0.033 0.967 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.057 0.943 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.623 9.645 12.483 21.510 hybrid contribution -0.228 0.250 0.078 0.348 sum -14.852 9.895 12.561 21.823 Atomic orbital electron populations 1.21778 0.94457 1.01800 1.01477 1.20430 0.95641 0.96007 0.96848 1.21761 1.01300 0.94954 1.01448 1.19476 0.94024 0.93481 0.95899 1.19856 1.03751 1.02768 0.91096 1.25219 1.04780 1.02583 1.04458 1.83096 1.42661 1.31657 0.96345 1.24525 1.10452 1.06340 0.97139 1.16885 0.78952 0.79346 0.87160 1.90685 1.61033 1.61205 1.27632 1.45986 1.40938 1.38798 1.10232 1.22194 0.95591 0.93557 0.85444 0.88803 1.23405 0.96323 0.98937 1.00556 1.21945 1.01196 0.82939 0.91060 1.44505 1.20479 1.18041 1.48991 1.19067 0.99774 0.95139 1.20852 0.90391 1.24789 0.98719 0.98136 0.98942 1.69815 1.28281 1.28451 1.30298 0.86011 0.80932 0.81329 0.77277 1.20547 1.21770 1.21768 1.20985 0.87912 0.91027 0.95377 0.94700 1.22244 0.97948 1.00245 1.01068 0.93058 0.92237 0.92693 0.85863 0.92192 0.93094 0.92637 0.84051 0.81564 0.77119 0.91996 0.91817 0.87349 0.96689 0.93738 0.92606 0.94319 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.99 37.16 0.33 -0.98 16 2 C -0.07 -0.81 3.08 -91.77 -0.28 -1.09 16 3 C -0.14 -1.38 9.09 37.16 0.34 -1.04 16 4 C -0.01 -0.16 4.72 -105.47 -0.50 -0.66 16 5 C -0.14 -1.36 9.18 -41.41 -0.38 -1.74 16 6 C -0.23 -2.00 10.92 29.18 0.32 -1.69 16 7 S 0.19 1.91 22.17 -107.50 -2.38 -0.47 16 8 C -0.26 -3.44 6.45 -36.79 -0.24 -3.68 16 9 C 0.59 9.31 7.77 -12.90 -0.10 9.21 16 10 O -0.53 -9.66 13.72 5.18 0.07 -9.59 16 11 N -0.71 -10.99 5.20 -53.36 -0.28 -11.27 16 12 C 0.14 2.50 2.76 -66.09 -0.18 2.32 16 13 H 0.09 1.82 7.40 -51.93 -0.38 1.44 16 14 C -0.15 -3.05 6.77 -24.58 -0.17 -3.22 16 15 C 0.15 3.74 5.88 -2.52 -0.01 3.72 16 16 N -0.59 -14.76 3.13 -162.56 -0.51 -15.27 16 17 C -0.22 -5.95 9.87 -15.06 -0.15 -6.10 16 18 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 19 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 20 N -0.92 -26.51 10.09 55.49 0.56 -25.95 16 21 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 C 0.16 3.11 3.48 -66.95 -0.23 2.88 16 26 H 0.04 0.69 7.69 -51.93 -0.40 0.29 16 27 C -0.16 -2.88 9.14 37.16 0.34 -2.54 16 28 H 0.05 0.41 7.51 -51.93 -0.39 0.02 16 29 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.12 1.80 4.95 -51.93 -0.26 1.54 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.43 8.00 -51.93 -0.42 0.02 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.14 1.07 7.67 -52.49 -0.40 0.66 16 36 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.39 5.34 7.45 -40.82 -0.30 5.03 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.11 2.95 5.89 -51.93 -0.31 2.65 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.05 1.06 8.02 -51.93 -0.42 0.65 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 370.82 15.07 5.59 5.59 Total: -1.00 -30.28 370.82 -10.03 -40.31 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -7.05 Total: 4.85 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -1.01 Total: -4.98 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: -0.23 Total: -52.48 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.07 Total: -9.59 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -2.38 Total: -0.47 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.28 -10.03 -40.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089056224.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.111 kcal (2) G-P(sol) polarization free energy of solvation -30.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds