Wall clock time and date at job start Tue Mar 31 2020 14:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47030 * 2 1 4 4 C 1.50700 * 109.47289 * 119.99466 * 2 1 3 5 5 C 1.33819 * 124.52139 * 119.99933 * 4 2 1 6 6 C 1.37467 * 115.10375 * 180.02562 * 5 4 2 7 7 C 1.36655 * 113.29840 * 359.97438 * 6 5 4 8 8 C 1.46575 * 125.46205 * 179.73918 * 7 6 5 9 9 O 1.21702 * 119.99838 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00469 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00518 * 180.02562 * 10 8 7 12 12 H 1.08998 * 110.63603 * 325.69829 * 11 10 8 13 13 C 1.55150 * 110.71981 * 88.84260 * 11 10 8 14 14 C 1.54909 * 101.58242 * 153.86437 * 13 11 10 15 15 N 1.47423 * 104.83377 * 322.99437 * 14 13 11 16 16 C 1.36933 * 125.64932 * 204.15958 * 15 14 13 17 17 H 1.08006 * 120.00177 * 179.97438 * 16 15 14 18 18 C 1.38809 * 120.00253 * 359.97438 * 16 15 14 19 19 N 1.31626 * 119.99882 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00283 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47035 * 89.99976 * 20 18 16 22 22 H 1.48503 * 109.46895 * 209.99829 * 20 18 16 23 23 H 1.48500 * 109.47252 * 329.99936 * 20 18 16 24 24 C 1.47326 * 108.73699 * 24.28032 * 15 14 13 25 25 H 1.09001 * 109.85073 * 239.39125 * 24 15 14 26 26 C 1.52992 * 110.06445 * 118.12831 * 24 15 14 27 27 S 1.70616 * 124.52580 * 300.04278 * 4 2 1 28 28 H 1.09006 * 109.46692 * 300.00282 * 1 2 3 29 29 H 1.09000 * 109.47213 * 59.99797 * 1 2 3 30 30 H 1.08993 * 109.46974 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47118 * 240.00044 * 2 1 3 32 32 H 1.09004 * 109.47025 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47035 * 299.99685 * 3 2 1 34 34 H 1.08996 * 109.47587 * 60.00337 * 3 2 1 35 35 H 1.08000 * 122.44928 * 0.02562 * 5 4 2 36 36 H 1.07999 * 123.35727 * 180.02562 * 6 5 4 37 37 H 0.97010 * 119.99717 * 0.02562 * 10 8 7 38 38 H 1.09000 * 111.00863 * 271.94196 * 13 11 10 39 39 H 1.09004 * 111.00547 * 35.79288 * 13 11 10 40 40 H 1.09006 * 110.36612 * 81.82777 * 14 13 11 41 41 H 1.08994 * 110.37284 * 204.14937 * 14 13 11 42 42 H 0.96999 * 119.99963 * 179.97438 * 19 18 16 43 43 H 1.09001 * 109.47602 * 302.27018 * 26 24 15 44 44 H 1.09002 * 109.47390 * 62.26717 * 26 24 15 45 45 H 1.08999 * 109.47183 * 182.27174 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 2.8049 -1.8028 1.2132 6 6 3.1505 -2.2924 2.4504 7 6 2.6345 -1.5623 3.4840 8 6 2.8299 -1.8487 4.9081 9 8 3.4993 -2.8058 5.2501 10 7 2.2683 -1.0522 5.8390 11 6 2.4640 -1.3381 7.2625 12 1 2.5152 -2.4131 7.4349 13 6 3.7417 -0.6356 7.7928 14 6 3.4059 -0.4731 9.2963 15 7 1.9635 -0.1704 9.3304 16 6 1.3108 0.4934 10.3346 17 1 0.2470 0.6667 10.2651 18 6 2.0164 0.9436 11.4420 19 7 3.3127 0.7320 11.5270 20 14 1.1262 1.8498 12.8116 21 1 0.6491 0.8728 13.8230 22 1 2.0563 2.8130 13.4539 23 1 -0.0344 2.5841 12.2466 24 6 1.3392 -0.7026 8.1067 25 1 0.8692 0.1072 7.5486 26 6 0.2971 -1.7630 8.4676 27 16 1.6912 -0.2295 2.8316 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 3.1329 -2.2661 0.2945 36 1 3.7690 -3.1664 2.5917 37 1 1.7344 -0.2894 5.5664 38 1 4.6201 -1.2658 7.6545 39 1 3.8802 0.3350 7.3164 40 1 3.6119 -1.3991 9.8332 41 1 3.9766 0.3502 9.7257 42 1 3.8058 1.0470 12.3007 43 1 0.7720 -2.5586 9.0417 44 1 -0.4937 -1.3073 9.0635 45 1 -0.1295 -2.1787 7.5547 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089066066.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:54 Heat of formation + Delta-G solvation = 8.049374 kcal Electronic energy + Delta-G solvation = -24724.258551 eV Core-core repulsion = 21254.558787 eV Total energy + Delta-G solvation = -3469.699765 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.76956 -38.45962 -37.42924 -35.34336 -34.03828 -32.06668 -30.39997 -29.54977 -28.38343 -27.57689 -25.60010 -24.22911 -23.96517 -21.71322 -21.31988 -20.19663 -20.06534 -19.07451 -17.84392 -16.79239 -16.28528 -15.81718 -15.10100 -14.85405 -14.75758 -14.64413 -14.03221 -14.01096 -13.93547 -13.57589 -13.22649 -12.88303 -12.77886 -12.43240 -12.40043 -12.13463 -11.95603 -11.71215 -11.58544 -11.55338 -11.52209 -11.14092 -10.90610 -10.86955 -10.83115 -10.55933 -10.43644 -10.09613 -9.85224 -9.75345 -9.56289 -8.92116 -8.75108 -8.67403 -8.58096 -6.88214 -5.65689 -3.08652 0.37922 1.28473 1.72879 2.26640 3.28493 3.30552 3.39586 3.44734 3.46471 4.20022 4.47594 4.48541 4.70183 4.85047 4.98202 5.17246 5.20202 5.27907 5.30251 5.40614 5.41364 5.41808 5.53305 5.58503 5.62313 5.75489 5.80847 5.81006 5.86773 6.00808 6.11863 6.18864 6.24124 6.30072 6.34134 6.52771 6.59640 6.71764 6.85454 7.09316 7.51439 7.61736 7.65805 7.84949 8.30528 8.35507 9.20152 9.80764 10.44829 11.37674 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020860 B = 0.002769 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.976047 B =10110.515826 C =10699.161726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.027 4.027 3 C -0.150 4.150 4 C -0.191 4.191 5 C -0.153 4.153 6 C -0.057 4.057 7 C -0.261 4.261 8 C 0.588 3.412 9 O -0.532 6.532 10 N -0.711 5.711 11 C 0.135 3.865 12 H 0.095 0.905 13 C -0.153 4.153 14 C 0.153 3.847 15 N -0.595 5.595 16 C -0.220 4.220 17 H 0.078 0.922 18 C -0.010 4.010 19 N -0.921 5.921 20 Si 0.914 3.086 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.155 3.845 25 H 0.036 0.964 26 C -0.155 4.155 27 S 0.205 5.795 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.142 0.858 36 H 0.152 0.848 37 H 0.394 0.606 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.015 0.985 41 H 0.110 0.890 42 H 0.252 0.748 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.728 -1.129 -24.353 24.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.048 4.048 3 C -0.207 4.207 4 C -0.311 4.311 5 C -0.184 4.184 6 C -0.090 4.090 7 C -0.382 4.382 8 C 0.373 3.627 9 O -0.411 6.411 10 N -0.360 5.360 11 C 0.031 3.969 12 H 0.113 0.887 13 C -0.193 4.193 14 C 0.028 3.972 15 N -0.320 5.320 16 C -0.348 4.348 17 H 0.096 0.904 18 C -0.206 4.206 19 N -0.569 5.569 20 Si 0.745 3.255 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.046 3.954 25 H 0.054 0.946 26 C -0.215 4.215 27 S 0.473 5.527 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.159 0.841 36 H 0.170 0.830 37 H 0.229 0.771 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.033 0.967 41 H 0.127 0.873 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.044 -0.507 -23.202 23.557 hybrid contribution 0.152 -0.506 -0.112 0.540 sum -3.892 -1.013 -23.314 23.658 Atomic orbital electron populations 1.21949 0.93766 1.02539 1.02461 1.19767 0.96024 0.95718 0.93244 1.21952 1.01731 0.94594 1.02466 1.24291 1.04957 1.01660 1.00194 1.19954 1.01986 0.97575 0.98858 1.20728 0.98335 0.99744 0.90214 1.24728 1.11355 1.04341 0.97762 1.16925 0.79681 0.82676 0.83396 1.90821 1.39769 1.29103 1.81358 1.45973 1.52835 1.30295 1.06925 1.22212 0.96795 1.00568 0.77303 0.88699 1.23411 0.96116 0.99362 1.00396 1.21953 0.85547 1.00968 0.88689 1.44564 1.04106 1.64957 1.18416 1.19025 0.92247 1.27452 0.96111 0.90449 1.24790 0.95934 1.01425 0.98453 1.69797 1.05880 1.51365 1.29887 0.86078 0.78282 0.79155 0.81997 1.21652 1.21680 1.20714 1.21047 0.91496 0.93636 0.89176 0.94627 1.22231 0.99778 0.99643 0.99824 1.82981 1.47221 1.26645 0.95830 0.92218 0.91736 0.92064 0.89350 0.92037 0.91742 0.92197 0.84050 0.83038 0.77132 0.91861 0.91952 0.96709 0.87259 0.93683 0.92832 0.92637 0.94281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.08 37.16 0.34 -0.57 16 2 C -0.03 -0.18 3.25 -91.77 -0.30 -0.48 16 3 C -0.15 -0.93 9.08 37.16 0.34 -0.59 16 4 C -0.19 -1.71 4.95 -35.86 -0.18 -1.89 16 5 C -0.15 -1.44 9.95 -41.41 -0.41 -1.85 16 6 C -0.06 -0.67 10.01 -40.43 -0.40 -1.07 16 7 C -0.26 -3.43 6.45 -36.79 -0.24 -3.67 16 8 C 0.59 9.58 7.78 -12.90 -0.10 9.48 16 9 O -0.53 -10.44 16.52 5.19 0.09 -10.35 16 10 N -0.71 -11.24 5.19 -53.37 -0.28 -11.52 16 11 C 0.14 2.54 2.79 -66.10 -0.18 2.35 16 12 H 0.10 1.89 7.33 -51.93 -0.38 1.51 16 13 C -0.15 -3.10 6.77 -24.59 -0.17 -3.27 16 14 C 0.15 3.76 5.89 -2.53 -0.01 3.74 16 15 N -0.60 -14.85 3.14 -162.35 -0.51 -15.36 16 16 C -0.22 -5.97 9.91 -15.06 -0.15 -6.12 16 17 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 18 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 19 N -0.92 -26.63 10.09 55.49 0.56 -26.07 16 20 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C 0.15 3.13 3.49 -66.79 -0.23 2.90 16 25 H 0.04 0.70 7.70 -51.93 -0.40 0.30 16 26 C -0.16 -2.91 9.15 37.15 0.34 -2.57 16 27 S 0.21 2.07 21.37 -107.50 -2.30 -0.23 16 28 H 0.06 0.39 7.90 -51.93 -0.41 -0.02 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.50 8.07 -51.93 -0.42 0.08 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.40 7.90 -51.93 -0.41 -0.01 16 35 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.39 5.42 7.45 -40.82 -0.30 5.11 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.11 2.99 5.87 -51.93 -0.30 2.68 16 42 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.05 1.06 8.06 -51.93 -0.42 0.64 16 45 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 377.04 15.07 5.68 5.68 Total: -1.00 -31.11 377.04 -10.48 -41.60 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.24 Total: 3.43 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -1.46 Total: -3.98 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: -0.23 Total: -52.95 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -2.30 Total: -0.23 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.11 -10.48 -41.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089066066.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.646 kcal (2) G-P(sol) polarization free energy of solvation -31.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds