Wall clock time and date at job start Tue Mar 31 2020 13:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46901 * 109.46974 * 246.43733 * 3 2 1 5 5 C 1.46896 * 110.99781 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46942 * 180.02562 * 5 4 3 7 7 C 1.56277 * 112.59664 * 298.45623 * 6 5 4 8 8 C 1.54839 * 104.68260 * 214.59365 * 7 6 5 9 9 C 1.54843 * 102.73675 * 37.92286 * 8 7 6 10 10 C 1.54162 * 104.32774 * 321.81312 * 9 8 7 11 11 H 1.09000 * 111.82447 * 147.13417 * 10 9 8 12 12 C 1.54329 * 108.86545 * 271.23094 * 10 9 8 13 13 N 1.48116 * 104.69331 * 90.48899 * 12 10 9 14 14 C 1.34777 * 127.84310 * 219.72239 * 13 12 10 15 15 O 1.21283 * 119.99750 * 180.02562 * 14 13 12 16 16 C 1.50702 * 119.99928 * 0.30644 * 14 13 12 17 17 S 1.80999 * 109.46903 * 179.72354 * 16 14 13 18 18 C 1.76200 * 99.99730 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00351 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00095 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99941 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00384 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46990 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47522 * 119.99735 * 22 20 18 25 25 H 1.48500 * 109.47073 * 240.00101 * 22 20 18 26 26 C 1.48124 * 104.31221 * 39.98904 * 13 12 10 27 27 H 4.40887 * 5.52263 * 179.97438 * 4 1 2 28 28 H 1.09006 * 109.47026 * 126.43658 * 3 2 1 29 29 H 1.09000 * 109.47330 * 6.43922 * 3 2 1 30 30 H 1.00891 * 111.00096 * 56.04911 * 4 3 2 31 31 H 1.08997 * 109.47860 * 59.99838 * 5 4 3 32 32 H 1.09005 * 109.46917 * 299.99830 * 5 4 3 33 33 H 1.09002 * 110.51935 * 95.64617 * 7 6 5 34 34 H 1.09003 * 110.05652 * 333.30851 * 7 6 5 35 35 H 1.08992 * 110.76155 * 279.60585 * 8 7 6 36 36 H 1.09008 * 110.91391 * 156.30641 * 8 7 6 37 37 H 1.09003 * 110.46087 * 203.10259 * 9 8 7 38 38 H 1.09001 * 110.46257 * 80.52570 * 9 8 7 39 39 H 1.08999 * 110.38840 * 331.68672 * 12 10 9 40 40 H 1.09000 * 110.48680 * 209.34142 * 12 10 9 41 41 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 42 42 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 43 43 H 0.97002 * 120.00288 * 179.97438 * 21 20 18 44 44 H 1.09000 * 110.39441 * 78.82598 * 26 13 12 45 45 H 1.08998 * 110.38913 * 201.21625 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1353 0.5545 1.2695 5 6 4.6038 0.5714 1.3052 6 6 5.0748 1.1529 2.6397 7 6 4.6045 2.6281 2.8514 8 6 5.7630 3.3019 3.6269 9 6 7.0198 2.6656 2.9840 10 6 6.6204 1.1970 2.7381 11 1 7.0966 0.7916 1.8454 12 6 6.9600 0.3702 3.9961 13 7 5.7333 0.4254 4.8244 14 6 5.6445 0.5561 6.1629 15 8 4.5567 0.5849 6.6985 16 6 6.8967 0.6727 6.9933 17 16 6.4493 0.8423 8.7389 18 6 8.0546 0.9552 9.4565 19 1 8.9316 0.9118 8.8276 20 6 8.1922 1.1010 10.8299 21 7 7.1233 1.1555 11.5963 22 14 9.8940 1.2214 11.5907 23 1 10.9212 1.1349 10.5218 24 1 10.0275 2.5178 12.3024 25 1 10.0862 0.1065 12.5526 26 6 4.6264 0.2978 3.8484 27 1 -1.0502 0.0001 -0.0002 28 1 3.0090 0.6112 -0.8268 29 1 3.0098 -1.0203 -0.1152 30 1 2.7601 0.0446 2.0550 31 1 4.9801 1.1861 0.4875 32 1 4.9815 -0.4456 1.1988 33 1 3.6863 2.6560 3.4380 34 1 4.4569 3.1154 1.8875 35 1 5.7084 3.0617 4.6886 36 1 5.7564 4.3815 3.4758 37 1 7.8669 2.7207 3.6677 38 1 7.2569 3.1589 2.0414 39 1 7.7988 0.8174 4.5295 40 1 7.1891 -0.6604 3.7250 41 1 7.5059 -0.2212 6.8595 42 1 7.4625 1.5487 6.6763 43 1 7.2194 1.2570 12.5562 44 1 4.4985 -0.7436 3.5532 45 1 3.7011 0.6904 4.2701 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112263394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:09 Heat of formation + Delta-G solvation = 19.432700 kcal Electronic energy + Delta-G solvation = -24881.453600 eV Core-core repulsion = 21412.247454 eV Total energy + Delta-G solvation = -3469.206147 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.79392 -38.24900 -36.70287 -34.26465 -33.27115 -32.42656 -30.97311 -30.06443 -29.11033 -26.56286 -25.65449 -25.42183 -24.60352 -22.86466 -20.39008 -19.45587 -19.25229 -18.41329 -17.60561 -16.74305 -16.52723 -15.94005 -15.11611 -15.04978 -14.90051 -14.80239 -14.53081 -14.39407 -13.85543 -13.70763 -13.50038 -13.30022 -13.04545 -12.81388 -12.62182 -12.26464 -11.90908 -11.78748 -11.20738 -11.07302 -11.05319 -10.99394 -10.95749 -10.83416 -10.76283 -10.74769 -10.70034 -10.62951 -10.51888 -9.80051 -9.37572 -9.07288 -8.84395 -8.49401 -8.22163 -6.49725 -6.21523 -3.91974 2.39318 2.53959 2.91404 3.08354 3.21456 3.26294 3.31163 3.62285 3.78445 4.10588 4.20191 4.28878 4.30065 4.40819 4.81430 4.86839 4.99104 5.01148 5.04021 5.11043 5.13634 5.19280 5.27157 5.31059 5.40749 5.45931 5.50610 5.54735 5.62299 5.64782 5.76271 5.84446 5.85840 5.89521 5.91139 6.00164 6.07150 6.14038 6.21351 6.36375 6.41053 6.54837 6.92180 7.31050 7.59944 7.76146 8.35574 8.59074 9.23821 10.85945 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023590 B = 0.002622 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.680170 B =10675.242123 C =11291.686883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.189 4.189 3 C 0.168 3.832 4 N -0.684 5.684 5 C 0.083 3.917 6 C -0.072 4.072 7 C -0.093 4.093 8 C -0.128 4.128 9 C -0.115 4.115 10 C -0.098 4.098 11 H 0.090 0.910 12 C 0.105 3.895 13 N -0.624 5.624 14 C 0.554 3.446 15 O -0.516 6.516 16 C -0.146 4.146 17 S -0.061 6.061 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.116 3.884 27 H 0.217 0.783 28 H 0.095 0.905 29 H 0.054 0.946 30 H 0.348 0.652 31 H 0.080 0.920 32 H 0.036 0.964 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.268 0.732 44 H 0.060 0.940 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.545 -1.049 -26.320 26.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.189 4.189 3 C 0.040 3.960 4 N -0.316 5.316 5 C -0.046 4.046 6 C -0.073 4.073 7 C -0.130 4.130 8 C -0.165 4.165 9 C -0.152 4.152 10 C -0.118 4.118 11 H 0.108 0.892 12 C -0.019 4.019 13 N -0.361 5.361 14 C 0.343 3.657 15 O -0.390 6.390 16 C -0.296 4.296 17 S 0.166 5.834 18 C -0.682 4.682 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.007 4.007 27 H 0.234 0.766 28 H 0.113 0.887 29 H 0.071 0.929 30 H 0.167 0.833 31 H 0.099 0.901 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.263 -0.328 -25.394 25.935 hybrid contribution 2.389 -0.981 -0.023 2.583 sum -2.874 -1.309 -25.417 25.612 Atomic orbital electron populations 1.24956 0.95994 1.00975 0.99115 1.22886 0.94302 1.00338 1.01411 1.18827 0.84732 0.98656 0.93811 1.60398 1.08156 1.59223 1.03817 1.21868 0.86793 0.99130 0.96840 1.22526 0.94560 0.96831 0.93421 1.22564 0.98003 0.92429 1.00013 1.22494 0.94462 0.99204 1.00348 1.22389 0.98296 0.94015 1.00535 1.22704 0.94636 0.96700 0.97742 0.89191 1.22470 0.88718 0.99703 0.90979 1.48884 1.07712 1.74438 1.05017 1.19954 0.91143 0.75016 0.79557 1.90714 1.29346 1.48759 1.70199 1.23494 0.97837 1.04629 1.03655 1.85415 1.11660 1.95505 0.90806 1.22891 0.92383 1.58060 0.94851 0.90920 1.24997 0.97952 0.94604 0.96079 1.70031 1.28411 1.46573 1.05244 0.86118 0.82422 0.77930 0.79032 1.19626 1.20555 1.20573 1.22332 0.92110 0.98360 0.87922 0.76581 0.88737 0.92865 0.83348 0.90139 0.94545 0.91423 0.91441 0.91183 0.91729 0.91312 0.91629 0.89840 0.91462 0.89449 0.89391 0.92240 0.92223 0.89586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.54 19.25 29.55 0.57 -0.97 16 2 C -0.19 -1.66 13.60 -37.12 -0.50 -2.16 16 3 C 0.17 1.16 6.16 -6.61 -0.04 1.12 16 4 N -0.68 -5.36 6.24 -116.89 -0.73 -6.09 16 5 C 0.08 0.57 4.67 -3.82 -0.02 0.55 16 6 C -0.07 -0.64 0.81 -150.83 -0.12 -0.76 16 7 C -0.09 -0.94 5.71 -24.00 -0.14 -1.08 16 8 C -0.13 -1.41 6.54 -24.79 -0.16 -1.57 16 9 C -0.11 -1.04 6.27 -25.15 -0.16 -1.20 16 10 C -0.10 -0.82 3.56 -88.30 -0.31 -1.14 16 11 H 0.09 0.57 7.88 -51.93 -0.41 0.16 16 12 C 0.10 1.11 6.34 -2.46 -0.02 1.09 16 13 N -0.62 -8.88 2.59 -169.19 -0.44 -9.32 16 14 C 0.55 10.75 7.93 -10.98 -0.09 10.66 16 15 O -0.52 -12.09 16.13 5.55 0.09 -12.00 16 16 C -0.15 -3.01 5.13 36.01 0.18 -2.82 16 17 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 18 C -0.53 -15.25 9.50 30.94 0.29 -14.95 16 19 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 22 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 C 0.12 1.36 5.21 -2.26 -0.01 1.35 16 27 H 0.22 1.04 7.80 -54.08 -0.42 0.62 16 28 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.35 2.92 7.86 -39.30 -0.31 2.61 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.07 0.81 7.54 -51.93 -0.39 0.41 16 34 H 0.07 0.64 7.99 -51.93 -0.41 0.22 16 35 H 0.07 1.00 7.76 -51.93 -0.40 0.59 16 36 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 37 H 0.07 0.66 7.44 -51.93 -0.39 0.27 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.90 6.58 -51.93 -0.34 0.56 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 42 H 0.09 1.69 7.95 -51.92 -0.41 1.28 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.06 0.63 7.99 -51.93 -0.41 0.21 16 45 H 0.09 1.18 7.26 -51.93 -0.38 0.80 16 LS Contribution 381.10 15.07 5.74 5.74 Total: -1.00 -34.49 381.10 -9.66 -44.15 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -7.21 Total: 0.37 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -0.62 Total: -9.89 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: -0.43 Total: -40.93 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.09 Total: -12.00 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.49 -9.66 -44.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112263394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.583 kcal (2) G-P(sol) polarization free energy of solvation -34.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds