Wall clock time and date at job start Tue Mar 31 2020 13:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46901 * 109.46974 * 246.43733 * 3 2 1 5 5 C 1.46896 * 110.99781 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46942 * 180.02562 * 5 4 3 7 7 C 1.56277 * 112.59664 * 298.45623 * 6 5 4 8 8 C 1.54839 * 104.68260 * 214.59365 * 7 6 5 9 9 C 1.54843 * 102.73675 * 37.92286 * 8 7 6 10 10 C 1.54162 * 104.32774 * 321.81312 * 9 8 7 11 11 H 1.09000 * 111.82447 * 147.13417 * 10 9 8 12 12 C 1.54329 * 108.86545 * 271.23094 * 10 9 8 13 13 N 1.48116 * 104.69331 * 90.48899 * 12 10 9 14 14 C 1.34777 * 127.84310 * 219.72239 * 13 12 10 15 15 O 1.21283 * 119.99750 * 180.02562 * 14 13 12 16 16 C 1.50702 * 119.99928 * 0.30644 * 14 13 12 17 17 S 1.80999 * 109.46903 * 179.72354 * 16 14 13 18 18 C 1.76200 * 99.99730 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00351 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00095 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99941 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00384 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46990 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47522 * 119.99735 * 22 20 18 25 25 H 1.48500 * 109.47073 * 240.00101 * 22 20 18 26 26 C 1.48124 * 104.31221 * 39.98904 * 13 12 10 27 27 H 4.40887 * 5.52263 * 179.97438 * 4 1 2 28 28 H 1.09006 * 109.47026 * 126.43658 * 3 2 1 29 29 H 1.09000 * 109.47330 * 6.43922 * 3 2 1 30 30 H 1.00891 * 111.00096 * 56.04911 * 4 3 2 31 31 H 1.08997 * 109.47860 * 59.99838 * 5 4 3 32 32 H 1.09005 * 109.46917 * 299.99830 * 5 4 3 33 33 H 1.09002 * 110.51935 * 95.64617 * 7 6 5 34 34 H 1.09003 * 110.05652 * 333.30851 * 7 6 5 35 35 H 1.08992 * 110.76155 * 279.60585 * 8 7 6 36 36 H 1.09008 * 110.91391 * 156.30641 * 8 7 6 37 37 H 1.09003 * 110.46087 * 203.10259 * 9 8 7 38 38 H 1.09001 * 110.46257 * 80.52570 * 9 8 7 39 39 H 1.08999 * 110.38840 * 331.68672 * 12 10 9 40 40 H 1.09000 * 110.48680 * 209.34142 * 12 10 9 41 41 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 42 42 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 43 43 H 0.97002 * 120.00288 * 179.97438 * 21 20 18 44 44 H 1.09000 * 110.39441 * 78.82598 * 26 13 12 45 45 H 1.08998 * 110.38913 * 201.21625 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1353 0.5545 1.2695 5 6 4.6038 0.5714 1.3052 6 6 5.0748 1.1529 2.6397 7 6 4.6045 2.6281 2.8514 8 6 5.7630 3.3019 3.6269 9 6 7.0198 2.6656 2.9840 10 6 6.6204 1.1970 2.7381 11 1 7.0966 0.7916 1.8454 12 6 6.9600 0.3702 3.9961 13 7 5.7333 0.4254 4.8244 14 6 5.6445 0.5561 6.1629 15 8 4.5567 0.5849 6.6985 16 6 6.8967 0.6727 6.9933 17 16 6.4493 0.8423 8.7389 18 6 8.0546 0.9552 9.4565 19 1 8.9316 0.9118 8.8276 20 6 8.1922 1.1010 10.8299 21 7 7.1233 1.1555 11.5963 22 14 9.8940 1.2214 11.5907 23 1 10.9212 1.1349 10.5218 24 1 10.0275 2.5178 12.3024 25 1 10.0862 0.1065 12.5526 26 6 4.6264 0.2978 3.8484 27 1 -1.0502 0.0001 -0.0002 28 1 3.0090 0.6112 -0.8268 29 1 3.0098 -1.0203 -0.1152 30 1 2.7601 0.0446 2.0550 31 1 4.9801 1.1861 0.4875 32 1 4.9815 -0.4456 1.1988 33 1 3.6863 2.6560 3.4380 34 1 4.4569 3.1154 1.8875 35 1 5.7084 3.0617 4.6886 36 1 5.7564 4.3815 3.4758 37 1 7.8669 2.7207 3.6677 38 1 7.2569 3.1589 2.0414 39 1 7.7988 0.8174 4.5295 40 1 7.1891 -0.6604 3.7250 41 1 7.5059 -0.2212 6.8595 42 1 7.4625 1.5487 6.6763 43 1 7.2194 1.2570 12.5562 44 1 4.4985 -0.7436 3.5532 45 1 3.7011 0.6904 4.2701 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112263394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:09 Heat of formation + Delta-G solvation = -3.005802 kcal Electronic energy + Delta-G solvation = -24882.426607 eV Core-core repulsion = 21412.247454 eV Total energy + Delta-G solvation = -3470.179153 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.76224 -39.61947 -37.32956 -35.38526 -34.60229 -33.89131 -31.96339 -31.10297 -30.28303 -27.77813 -27.23692 -26.46195 -25.47773 -23.61905 -21.22742 -20.81259 -20.04342 -19.61144 -18.93599 -17.98948 -17.58667 -16.90431 -16.66554 -16.52823 -16.02437 -15.69664 -15.57290 -15.43352 -15.18487 -14.69838 -14.41744 -14.36557 -14.19445 -13.91941 -13.64029 -13.50220 -13.20720 -13.12535 -12.92559 -12.65648 -12.56473 -11.91744 -11.84684 -11.76616 -11.73202 -11.62983 -11.60517 -11.48422 -11.29556 -11.17435 -11.12135 -10.93443 -10.29837 -9.67694 -9.36428 -8.70130 -8.36283 -6.15253 1.22317 1.40564 1.43653 1.55883 1.56891 1.78889 1.93659 2.08030 2.25541 2.97820 3.12543 3.27028 3.45923 3.50654 3.59432 3.71282 3.88434 4.11333 4.18683 4.20748 4.22982 4.34787 4.40921 4.46949 4.52928 4.59361 4.62558 4.69720 4.70617 4.74292 4.87205 4.93939 4.98136 5.04658 5.09849 5.13414 5.21322 5.23747 5.36442 5.40030 5.48381 5.51402 6.02784 6.18335 6.31609 6.46161 6.72492 7.04675 7.12483 8.73340 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023590 B = 0.002622 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.680170 B =10675.242123 C =11291.686883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.217 4.217 3 C 0.168 3.832 4 N -0.698 5.698 5 C 0.089 3.911 6 C -0.058 4.058 7 C -0.090 4.090 8 C -0.133 4.133 9 C -0.111 4.111 10 C -0.086 4.086 11 H 0.131 0.869 12 C 0.093 3.907 13 N -0.616 5.616 14 C 0.552 3.448 15 O -0.571 6.571 16 C -0.117 4.117 17 S -0.152 6.152 18 C -0.543 4.543 19 H 0.083 0.917 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 1.001 2.999 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.273 1.273 26 C 0.112 3.888 27 H 0.238 0.762 28 H 0.107 0.893 29 H 0.068 0.932 30 H 0.341 0.659 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.039 0.961 34 H 0.082 0.918 35 H 0.028 0.972 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.271 0.729 44 H 0.079 0.921 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.893 -1.611 -29.621 29.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.217 4.217 3 C 0.041 3.959 4 N -0.329 5.329 5 C -0.039 4.039 6 C -0.060 4.060 7 C -0.127 4.127 8 C -0.171 4.171 9 C -0.148 4.148 10 C -0.105 4.105 11 H 0.149 0.851 12 C -0.028 4.028 13 N -0.350 5.350 14 C 0.340 3.660 15 O -0.450 6.450 16 C -0.268 4.268 17 S 0.075 5.925 18 C -0.691 4.691 19 H 0.101 0.899 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.822 3.178 23 H -0.179 1.179 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.010 4.010 27 H 0.255 0.745 28 H 0.125 0.875 29 H 0.085 0.915 30 H 0.159 0.841 31 H 0.118 0.882 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.101 0.899 35 H 0.047 0.953 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.112 0.888 41 H 0.123 0.877 42 H 0.120 0.880 43 H 0.080 0.920 44 H 0.097 0.903 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.587 -0.894 -28.774 28.904 hybrid contribution 1.469 -0.789 0.874 1.883 sum -1.117 -1.684 -27.900 27.973 Atomic orbital electron populations 1.25710 0.97050 1.00640 0.98652 1.23573 0.95477 1.00782 1.01904 1.18935 0.83738 0.99673 0.93561 1.60400 1.08916 1.59613 1.04020 1.21880 0.86195 1.00353 0.95510 1.22459 0.95119 0.95126 0.93273 1.22518 0.96447 0.93777 0.99976 1.22480 0.96571 0.99848 0.98196 1.22410 0.96639 0.94488 1.01308 1.22749 0.93893 0.95904 0.97976 0.85105 1.22895 0.86860 1.01877 0.91206 1.48800 1.10568 1.71821 1.03763 1.19671 0.89732 0.75290 0.81299 1.90686 1.30730 1.51808 1.71810 1.23264 0.98843 1.05964 0.98698 1.85617 1.13746 1.95892 0.97254 1.23203 0.92262 1.58124 0.95533 0.89933 1.26166 1.02775 0.93766 0.96568 1.70198 1.31295 1.47634 1.05695 0.84879 0.76593 0.78111 0.78201 1.17905 1.19889 1.19851 1.22545 0.90293 1.00012 0.88171 0.74505 0.87466 0.91465 0.84146 0.88222 0.92636 0.94260 0.89902 0.95296 0.91442 0.91814 0.89091 0.89964 0.88823 0.87703 0.87951 0.91968 0.90280 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.08 19.25 74.32 1.43 -1.65 16 2 C -0.22 -3.57 13.60 31.13 0.42 -3.14 16 3 C 0.17 1.94 6.16 84.50 0.52 2.46 16 4 N -0.70 -9.49 6.24 -523.72 -3.27 -12.75 16 5 C 0.09 0.88 4.67 86.30 0.40 1.28 16 6 C -0.06 -0.89 0.81 -49.80 -0.04 -0.93 16 7 C -0.09 -1.75 5.71 32.36 0.18 -1.57 16 8 C -0.13 -2.90 6.54 31.85 0.21 -2.69 16 9 C -0.11 -1.68 6.27 31.62 0.20 -1.48 16 10 C -0.09 -1.09 3.56 -9.29 -0.03 -1.12 16 11 H 0.13 0.78 7.88 -2.39 -0.02 0.76 16 12 C 0.09 1.69 6.34 86.52 0.55 2.24 16 13 N -0.62 -17.21 2.59 -807.59 -2.09 -19.29 16 14 C 0.55 22.09 7.93 87.66 0.70 22.78 16 15 O -0.57 -28.51 16.13 -3.04 -0.05 -28.56 16 16 C -0.12 -4.89 5.13 71.24 0.37 -4.53 16 17 S -0.15 -8.73 20.57 -56.49 -1.16 -9.89 16 18 C -0.54 -31.51 9.50 67.95 0.65 -30.86 16 19 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 20 C 0.01 0.68 5.49 84.86 0.47 1.15 16 21 N -0.91 -56.75 13.22 21.65 0.29 -56.47 16 22 Si 1.00 43.95 29.55 68.60 2.03 45.98 16 23 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 C 0.11 2.56 5.21 86.65 0.45 3.01 16 27 H 0.24 2.05 7.80 -4.41 -0.03 2.02 16 28 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.34 5.38 7.86 -89.70 -0.71 4.68 16 31 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 33 H 0.04 0.98 7.54 -2.39 -0.02 0.97 16 34 H 0.08 1.38 7.99 -2.39 -0.02 1.36 16 35 H 0.03 0.86 7.76 -2.39 -0.02 0.84 16 36 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.06 1.06 7.44 -2.39 -0.02 1.04 16 38 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.08 1.55 6.58 -2.39 -0.02 1.53 16 40 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.10 4.00 8.14 -2.39 -0.02 3.98 16 42 H 0.10 3.95 7.95 -2.40 -0.02 3.94 16 43 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 44 H 0.08 1.52 7.99 -2.39 -0.02 1.51 16 45 H 0.06 1.64 7.26 -2.39 -0.02 1.63 16 Total: -1.00 -80.47 381.10 2.49 -77.98 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.27 Total: 18.05 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: 6.47 Total: -15.05 kcal Atomic # 7 Polarization: -83.44 SS G_CDS: -5.07 Total: -88.51 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.05 Total: -28.56 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.16 Total: -9.89 kcal Total: -80.47 2.49 -77.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112263394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.975 kcal (2) G-P(sol) polarization free energy of solvation -80.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds