Wall clock time and date at job start Tue Mar 31 2020 14:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.58830 * 2 1 4 4 C 1.53194 * 109.58567 * 120.43131 * 2 1 3 5 5 C 1.53039 * 109.31238 * 174.41801 * 4 2 1 6 6 C 1.53035 * 109.53920 * 298.63477 * 5 4 2 7 7 H 1.09002 * 109.50045 * 181.34860 * 6 5 4 8 8 N 1.46503 * 109.49871 * 301.40957 * 6 5 4 9 9 C 1.34769 * 120.00515 * 205.00339 * 8 6 5 10 10 O 1.21282 * 120.00120 * 359.97438 * 9 8 6 11 11 C 1.50700 * 120.00333 * 180.02562 * 9 8 6 12 12 C 1.52998 * 109.47367 * 179.97438 * 11 9 8 13 13 C 1.50696 * 109.47124 * 179.97438 * 12 11 9 14 14 C 1.33385 * 125.20310 * 89.72360 * 13 12 11 15 15 C 1.38429 * 114.92710 * 179.86014 * 14 13 12 16 16 C 1.33395 * 114.91093 * 0.42789 * 15 14 13 17 17 S 1.75879 * 109.59806 * 359.77453 * 16 15 14 18 18 C 1.52756 * 109.38643 * 61.24011 * 6 5 4 19 19 N 1.46925 * 109.00629 * 305.58919 * 18 6 5 20 20 C 1.36943 * 120.63040 * 233.58271 * 19 18 6 21 21 H 1.08006 * 119.99794 * 150.89713 * 20 19 18 22 22 C 1.38812 * 120.00018 * 330.89982 * 20 19 18 23 23 N 1.31614 * 119.99812 * 344.05115 * 22 20 19 24 24 Si 1.86795 * 119.99773 * 163.77993 * 22 20 19 25 25 H 1.48498 * 109.47284 * 84.97849 * 24 22 20 26 26 H 1.48507 * 109.46957 * 204.97503 * 24 22 20 27 27 H 1.48495 * 109.47248 * 324.97491 * 24 22 20 28 28 H 1.08995 * 109.47016 * 180.28636 * 1 2 3 29 29 H 1.08998 * 109.46424 * 300.28259 * 1 2 3 30 30 H 1.09000 * 109.47007 * 60.28228 * 1 2 3 31 31 H 1.09004 * 109.49546 * 294.36777 * 4 2 1 32 32 H 1.08999 * 109.49748 * 54.46546 * 4 2 1 33 33 H 1.09003 * 109.46060 * 58.65250 * 5 4 2 34 34 H 1.08998 * 109.46187 * 178.60615 * 5 4 2 35 35 H 0.97000 * 119.99373 * 25.00141 * 8 6 5 36 36 H 1.09003 * 109.46811 * 300.00124 * 11 9 8 37 37 H 1.09002 * 109.47036 * 59.99386 * 11 9 8 38 38 H 1.08995 * 109.47448 * 300.00359 * 12 11 9 39 39 H 1.09005 * 109.46635 * 60.00122 * 12 11 9 40 40 H 1.08005 * 122.54031 * 0.02562 * 14 13 12 41 41 H 1.07996 * 122.54539 * 180.20017 * 15 14 13 42 42 H 1.08004 * 125.19350 * 179.75164 * 16 15 14 43 43 H 1.08996 * 109.51365 * 185.71000 * 18 6 5 44 44 H 1.09000 * 109.43471 * 65.42199 * 18 6 5 45 45 H 0.97001 * 119.99833 * 179.71959 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7310 1.2445 5 6 3.5675 -0.8496 1.1690 6 6 3.9568 -1.6658 -0.0656 7 1 5.0411 -1.7702 -0.1057 8 7 3.3405 -2.9926 0.0109 9 6 3.8969 -4.0328 -0.6406 10 8 4.9077 -3.8705 -1.2909 11 6 3.2625 -5.3976 -0.5623 12 6 4.0858 -6.3907 -1.3849 13 6 3.4517 -7.7555 -1.3061 14 6 2.5222 -8.2210 -2.1418 15 6 2.0886 -9.5080 -1.8739 16 6 2.6597 -10.0843 -0.8150 17 16 3.8186 -8.9755 -0.0934 18 6 3.4644 -0.9504 -1.3223 19 7 2.0226 -0.6981 -1.1954 20 6 1.1536 -1.1108 -2.1700 21 1 0.1351 -1.3629 -1.9139 22 6 1.5818 -1.2052 -3.4870 23 7 2.6971 -0.6145 -3.8603 24 14 0.5790 -2.1769 -4.7277 25 1 -0.4905 -1.3114 -5.2865 26 1 1.4648 -2.6405 -5.8259 27 1 -0.0344 -3.3514 -4.0573 28 1 -0.3633 -1.0276 0.0051 29 1 -0.3632 0.5182 0.8875 30 1 -0.3633 0.5094 -0.8925 31 1 1.7661 -0.1696 2.1366 32 1 1.6029 -1.7270 1.2891 33 1 4.0062 0.1458 1.0994 34 1 3.9378 -1.3475 2.0651 35 1 2.5318 -3.1224 0.5307 36 1 3.2309 -5.7244 0.4771 37 1 2.2484 -5.3501 -0.9592 38 1 4.1171 -6.0637 -2.4242 39 1 5.1000 -6.4382 -0.9883 40 1 2.1389 -7.6389 -2.9669 41 1 1.3419 -10.0063 -2.4742 42 1 2.4431 -11.0795 -0.4556 43 1 3.6503 -1.5771 -2.1945 44 1 3.9929 -0.0033 -1.4311 45 1 2.9985 -0.6838 -4.7797 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132478992.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:57 Heat of formation + Delta-G solvation = 5.780207 kcal Electronic energy + Delta-G solvation = -25666.662960 eV Core-core repulsion = 22196.864797 eV Total energy + Delta-G solvation = -3469.798163 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.53444 -38.08299 -37.48624 -34.13134 -33.50133 -32.71675 -30.76858 -29.88955 -28.64882 -26.26500 -25.16741 -24.65676 -22.60632 -22.15745 -20.58697 -20.08873 -19.27087 -18.69930 -17.37726 -16.52399 -16.22564 -15.60729 -15.34838 -15.17469 -14.69495 -14.03877 -13.95291 -13.57421 -13.46016 -13.23270 -13.03483 -12.84215 -12.75928 -12.50013 -12.15781 -12.08333 -11.80230 -11.75687 -11.21484 -11.15683 -11.02136 -10.94242 -10.85829 -10.68839 -10.68060 -10.38663 -10.32527 -9.95343 -9.53465 -9.44567 -9.27184 -8.67132 -8.55127 -8.43111 -8.31007 -6.58504 -5.73500 -3.16983 0.92606 1.56273 1.93123 2.68813 3.23886 3.37852 3.44754 3.46375 3.81203 4.51043 4.77442 4.97251 5.07885 5.21231 5.32086 5.33667 5.37687 5.44000 5.52157 5.52391 5.59173 5.61593 5.72030 5.90997 6.02880 6.11990 6.14146 6.16577 6.19497 6.26951 6.33751 6.35706 6.45443 6.45959 6.54658 6.61979 6.72624 6.92908 7.05641 7.14213 7.42862 7.71532 7.84964 8.16381 8.50546 8.86033 9.25142 9.90026 10.46269 11.34522 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012271 B = 0.003980 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.247959 B = 7033.613100 C = 8181.710446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.130 4.130 5 C -0.118 4.118 6 C 0.119 3.881 7 H 0.074 0.926 8 N -0.701 5.701 9 C 0.513 3.487 10 O -0.549 6.549 11 C -0.134 4.134 12 C -0.034 4.034 13 C -0.160 4.160 14 C -0.145 4.145 15 C -0.129 4.129 16 C -0.223 4.223 17 S 0.087 5.913 18 C 0.162 3.838 19 N -0.582 5.582 20 C -0.251 4.251 21 H 0.067 0.933 22 C 0.007 3.993 23 N -0.898 5.898 24 Si 0.894 3.106 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.281 1.281 28 H 0.051 0.949 29 H 0.036 0.964 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.395 0.605 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.142 0.858 41 H 0.138 0.862 42 H 0.161 0.839 43 H 0.096 0.904 44 H 0.023 0.977 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.258 -12.745 10.545 16.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.169 4.169 5 C -0.157 4.157 6 C 0.013 3.987 7 H 0.092 0.908 8 N -0.351 5.351 9 C 0.299 3.701 10 O -0.428 6.428 11 C -0.175 4.175 12 C -0.074 4.074 13 C -0.277 4.277 14 C -0.174 4.174 15 C -0.160 4.160 16 C -0.358 4.358 17 S 0.349 5.651 18 C 0.036 3.964 19 N -0.306 5.306 20 C -0.381 4.381 21 H 0.085 0.915 22 C -0.192 4.192 23 N -0.542 5.542 24 Si 0.724 3.276 25 H -0.214 1.214 26 H -0.216 1.216 27 H -0.207 1.207 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.229 0.771 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.099 0.901 40 H 0.159 0.841 41 H 0.156 0.844 42 H 0.178 0.822 43 H 0.114 0.886 44 H 0.041 0.959 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.505 -12.690 11.141 16.953 hybrid contribution -1.961 -0.530 -1.714 2.658 sum -0.456 -13.219 9.426 16.242 Atomic orbital electron populations 1.21797 0.96164 1.01166 1.00176 1.20458 0.92856 0.93635 0.87214 0.95834 1.22060 0.95177 1.00653 0.99032 1.21687 0.96983 1.00137 0.96851 1.21681 0.96921 0.82047 0.98075 0.90769 1.45858 1.29298 1.08653 1.51305 1.20334 0.84550 0.86066 0.79140 1.90677 1.25629 1.85337 1.41138 1.21640 1.01343 0.92636 1.01883 1.19889 0.98176 0.86720 1.02584 1.24617 1.03041 1.00361 0.99728 1.20235 0.98998 0.96272 1.01942 1.20188 1.02109 0.95329 0.98340 1.25556 1.04049 1.04015 1.02187 1.84247 1.41721 1.07201 1.31884 1.21074 0.83729 0.97017 0.94610 1.44028 1.02761 1.64857 1.18930 1.19049 0.94555 1.38262 0.86188 0.91526 1.25031 0.97709 0.99611 0.96884 1.69993 1.23555 1.43769 1.16859 0.86456 0.79399 0.80264 0.81469 1.21442 1.21627 1.20690 0.92989 0.94463 0.92054 0.92939 0.92659 0.91228 0.93104 0.77097 0.89482 0.88562 0.88883 0.90060 0.84067 0.84446 0.82178 0.88595 0.95920 0.93684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 7.94 37.16 0.30 -2.12 16 2 C 0.17 3.21 3.50 -67.59 -0.24 2.98 16 3 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.13 -2.03 5.21 -26.61 -0.14 -2.17 16 5 C -0.12 -1.85 5.59 -26.69 -0.15 -2.00 16 6 C 0.12 2.23 2.81 -68.04 -0.19 2.04 16 7 H 0.07 1.45 7.58 -51.93 -0.39 1.06 16 8 N -0.70 -12.16 4.91 -53.91 -0.26 -12.43 16 9 C 0.51 9.25 7.79 -10.99 -0.09 9.17 16 10 O -0.55 -11.97 15.64 5.56 0.09 -11.88 16 11 C -0.13 -1.88 5.68 -27.88 -0.16 -2.03 16 12 C -0.03 -0.47 5.00 -27.89 -0.14 -0.61 16 13 C -0.16 -2.00 5.76 -36.01 -0.21 -2.20 16 14 C -0.14 -1.75 10.05 -41.21 -0.41 -2.16 16 15 C -0.13 -1.36 10.18 -41.20 -0.42 -1.78 16 16 C -0.22 -2.19 11.23 29.04 0.33 -1.87 16 17 S 0.09 0.93 23.33 -107.50 -2.51 -1.58 16 18 C 0.16 3.84 4.85 -3.94 -0.02 3.82 16 19 N -0.58 -13.67 2.91 -165.03 -0.48 -14.15 16 20 C -0.25 -6.53 8.59 -15.06 -0.13 -6.66 16 21 H 0.07 1.69 6.21 -52.48 -0.33 1.37 16 22 C 0.01 0.19 4.93 -17.43 -0.09 0.10 16 23 N -0.90 -26.23 11.20 55.49 0.62 -25.61 16 24 Si 0.89 21.71 29.58 -169.99 -5.03 16.68 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 H 0.05 0.93 7.45 -51.93 -0.39 0.54 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 1.21 7.62 -51.93 -0.40 0.81 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.84 6.40 -51.93 -0.33 0.51 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.39 6.09 6.77 -40.82 -0.28 5.82 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.09 1.42 8.10 -51.93 -0.42 1.00 16 39 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 40 H 0.14 1.66 8.06 -52.48 -0.42 1.24 16 41 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 42 H 0.16 1.18 8.06 -52.48 -0.42 0.76 16 43 H 0.10 2.68 6.10 -51.93 -0.32 2.36 16 44 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 369.96 15.07 5.58 5.58 Total: -1.00 -30.77 369.96 -10.81 -41.58 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -7.05 Total: 7.31 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -1.75 Total: -5.51 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: -0.12 Total: -52.19 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.09 Total: -11.88 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.51 Total: -1.58 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.77 -10.81 -41.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132478992.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.360 kcal (2) G-P(sol) polarization free energy of solvation -30.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds