Wall clock time and date at job start Tue Mar 31 2020 14:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.44730 * 2 1 4 4 C 1.53036 * 109.46209 * 240.02976 * 2 1 3 5 5 C 1.53187 * 109.33909 * 178.63045 * 4 2 1 6 6 N 1.46928 * 108.77623 * 54.61900 * 5 4 2 7 7 C 1.34777 * 120.63052 * 126.36901 * 6 5 4 8 8 O 1.21288 * 119.99622 * 179.97438 * 7 6 5 9 9 C 1.50699 * 120.00134 * 0.02562 * 7 6 5 10 10 C 1.50700 * 109.47329 * 179.97438 * 9 7 6 11 11 C 1.33395 * 125.20053 * 89.71265 * 10 9 7 12 12 C 1.38429 * 114.91780 * 179.86248 * 11 10 9 13 13 C 1.33386 * 114.92011 * 0.43155 * 12 11 10 14 14 S 1.75878 * 125.20626 * 270.02859 * 10 9 7 15 15 C 1.46927 * 118.73615 * 306.39196 * 6 5 4 16 16 C 1.53042 * 109.48686 * 119.94081 * 2 1 3 17 17 H 1.09003 * 109.46473 * 61.40247 * 16 2 1 18 18 C 1.53008 * 109.52401 * 301.34133 * 16 2 1 19 19 N 1.46495 * 109.46899 * 175.10951 * 18 16 2 20 20 C 1.36940 * 119.99774 * 179.97438 * 19 18 16 21 21 H 1.07994 * 120.00286 * 0.02562 * 20 19 18 22 22 C 1.38811 * 119.99679 * 180.02562 * 20 19 18 23 23 N 1.31618 * 120.00300 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99734 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47164 * 59.99699 * 24 22 20 26 26 H 1.48500 * 109.47027 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47370 * 299.99698 * 24 22 20 28 28 H 1.08997 * 109.46888 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47188 * 299.97083 * 1 2 3 30 30 H 1.08996 * 109.47348 * 59.96896 * 1 2 3 31 31 H 1.09002 * 109.49886 * 58.66167 * 4 2 1 32 32 H 1.09000 * 109.49395 * 298.59644 * 4 2 1 33 33 H 1.09000 * 109.58836 * 174.40473 * 5 4 2 34 34 H 1.09005 * 109.59054 * 294.68564 * 5 4 2 35 35 H 1.08999 * 109.46873 * 299.99877 * 9 7 6 36 36 H 1.08996 * 109.46994 * 60.00017 * 9 7 6 37 37 H 1.07994 * 122.53928 * 0.02562 * 11 10 9 38 38 H 1.07997 * 122.53573 * 180.20648 * 12 11 10 39 39 H 1.08000 * 125.20109 * 179.74696 * 13 12 11 40 40 H 1.08999 * 109.58621 * 173.39948 * 15 6 5 41 41 H 1.09003 * 109.58297 * 293.67513 * 15 6 5 42 42 H 1.08998 * 109.46620 * 295.11024 * 18 16 2 43 43 H 1.08996 * 109.46867 * 55.11028 * 18 16 2 44 44 H 0.97004 * 120.00394 * 0.02562 * 19 18 16 45 45 H 0.97001 * 120.00125 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5714 -0.6893 -1.2645 6 7 4.0679 -1.2494 -0.0002 7 6 4.9610 -2.2588 -0.0001 8 8 5.3636 -2.7122 1.0503 9 6 5.4603 -2.8233 -1.3052 10 6 6.4426 -3.9325 -1.0298 11 6 6.1271 -5.2203 -0.8835 12 6 7.2004 -6.0596 -0.6388 13 6 8.3863 -5.4521 -0.5775 14 16 8.1793 -3.7260 -0.8442 15 6 3.5719 -0.6886 1.2640 16 6 2.0405 -0.7201 1.2502 17 1 1.6979 -1.7548 1.2388 18 6 1.5040 -0.0183 2.4995 19 7 1.8962 -0.7750 3.6910 20 6 1.5266 -0.3348 4.9340 21 1 0.9457 0.5699 5.0358 22 6 1.8986 -1.0515 6.0630 23 7 2.6062 -2.1544 5.9389 24 14 1.3939 -0.4515 7.7585 25 1 -0.0876 -0.3936 7.8423 26 1 1.9113 -1.3872 8.7890 27 1 1.9562 0.9029 7.9920 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5134 0.8902 30 1 -0.3634 0.5143 -0.8897 31 1 1.6572 -0.2209 -2.1398 32 1 1.6974 -1.7555 -1.2383 33 1 3.9412 -1.2856 -2.0986 34 1 3.9148 0.3398 -1.3706 35 1 4.6192 -3.2159 -1.8766 36 1 5.9523 -2.0364 -1.8768 37 1 5.1116 -5.5811 -0.9534 38 1 7.0857 -7.1249 -0.5041 39 1 9.3293 -5.9447 -0.3919 40 1 3.9422 -1.2844 2.0983 41 1 3.9175 0.3400 1.3679 42 1 1.9173 0.9887 2.5562 43 1 0.4168 0.0376 2.4461 44 1 2.4183 -1.5874 3.5996 45 1 2.8658 -2.6554 6.7278 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132593608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:41 Heat of formation + Delta-G solvation = 2.815707 kcal Electronic energy + Delta-G solvation = -25131.057702 eV Core-core repulsion = 21661.130988 eV Total energy + Delta-G solvation = -3469.926713 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.25031 -38.29850 -37.40516 -34.95763 -33.66873 -32.42364 -31.72273 -29.79334 -28.41661 -27.12583 -25.39338 -23.70015 -23.20412 -22.82723 -21.21181 -20.04912 -19.32514 -18.95488 -17.28421 -17.13150 -16.79727 -15.85769 -15.46330 -15.21609 -14.82757 -14.39484 -14.09914 -13.88307 -13.63093 -13.46562 -13.06052 -12.98513 -12.86559 -12.75876 -12.52955 -12.42615 -12.35247 -11.85384 -11.73439 -11.63407 -11.47578 -10.97414 -10.86610 -10.79602 -10.77047 -10.57485 -10.28094 -10.13782 -9.94734 -9.66033 -9.53473 -8.80799 -8.68558 -8.48054 -8.44292 -6.84271 -5.67581 -2.97397 0.93658 1.59652 1.95724 2.68535 2.75998 3.16038 3.48758 3.52641 3.54478 4.47306 4.55768 4.64948 4.71303 4.83553 4.91294 4.95136 5.01951 5.16101 5.19791 5.29231 5.36354 5.51229 5.53568 5.63393 5.66997 5.68642 5.73999 5.82228 5.91560 5.97535 6.03954 6.05747 6.20589 6.23192 6.26196 6.34393 6.43487 6.46791 6.60432 6.68129 6.84037 6.92490 7.53063 7.75609 8.33590 8.50056 9.60870 10.19342 10.53343 11.54610 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011119 B = 0.003508 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.615123 B = 7978.959186 C = 9989.660324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.071 0.929 4 C -0.129 4.129 5 C 0.106 3.894 6 N -0.612 5.612 7 C 0.509 3.491 8 O -0.516 6.516 9 C -0.069 4.069 10 C -0.156 4.156 11 C -0.128 4.128 12 C -0.132 4.132 13 C -0.215 4.215 14 S 0.104 5.896 15 C 0.120 3.880 16 C -0.101 4.101 17 H 0.073 0.927 18 C 0.159 3.841 19 N -0.733 5.733 20 C -0.243 4.243 21 H 0.069 0.931 22 C -0.012 4.012 23 N -0.929 5.929 24 Si 0.906 3.094 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.286 1.286 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.162 0.838 40 H 0.103 0.897 41 H 0.064 0.936 42 H 0.018 0.982 43 H 0.027 0.973 44 H 0.385 0.615 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.946 -1.119 -23.273 24.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.089 0.911 4 C -0.167 4.167 5 C -0.018 4.018 6 N -0.347 5.347 7 C 0.295 3.705 8 O -0.391 6.391 9 C -0.110 4.110 10 C -0.274 4.274 11 C -0.158 4.158 12 C -0.162 4.162 13 C -0.351 4.351 14 S 0.367 5.633 15 C -0.001 4.001 16 C -0.121 4.121 17 H 0.092 0.908 18 C 0.031 3.969 19 N -0.378 5.378 20 C -0.374 4.374 21 H 0.087 0.913 22 C -0.208 4.208 23 N -0.578 5.578 24 Si 0.737 3.263 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.128 0.872 36 H 0.119 0.881 37 H 0.155 0.845 38 H 0.157 0.843 39 H 0.180 0.820 40 H 0.122 0.878 41 H 0.083 0.917 42 H 0.035 0.965 43 H 0.044 0.956 44 H 0.219 0.781 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.116 -0.058 -22.601 23.695 hybrid contribution -1.107 -1.176 1.058 1.931 sum 6.009 -1.234 -21.543 22.399 Atomic orbital electron populations 1.21879 0.94974 1.01948 1.01700 1.21084 0.95950 0.99359 0.93947 0.91103 1.21985 0.94597 1.01644 0.98492 1.21747 0.94851 0.99278 0.85888 1.48177 1.43359 1.35412 1.07717 1.20419 0.79409 0.79666 0.91021 1.90806 1.56568 1.58675 1.33027 1.20191 0.97910 0.96152 0.96783 1.23798 0.96716 0.97454 1.09429 1.20068 1.00453 0.92160 1.03115 1.20124 0.91610 1.01215 1.03283 1.25564 1.02377 0.96491 1.10683 1.84141 1.02174 1.06825 1.70117 1.21718 0.93613 0.99045 0.85739 1.21706 0.94537 1.00697 0.95121 0.90842 1.20717 0.96778 0.94027 0.85399 1.42411 1.65305 1.29257 1.00779 1.19152 1.28019 1.06430 0.83816 0.91325 1.24748 1.00792 0.97510 0.97770 1.69665 1.42211 1.17256 1.28623 0.86297 0.77956 0.77660 0.84422 1.21342 1.21707 1.21304 0.92793 0.91627 0.93245 0.90868 0.91460 0.90164 0.91302 0.87207 0.88108 0.84462 0.84348 0.82028 0.87841 0.91735 0.96466 0.95577 0.78115 0.93443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.82 37.16 0.33 -1.38 16 2 C -0.08 -1.01 2.23 -90.58 -0.20 -1.21 16 3 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.13 -1.21 5.36 -26.62 -0.14 -1.35 16 5 C 0.11 0.97 6.34 -3.71 -0.02 0.95 16 6 N -0.61 -8.39 2.97 -172.77 -0.51 -8.91 16 7 C 0.51 7.70 7.69 -10.99 -0.08 7.61 16 8 O -0.52 -10.57 15.45 5.55 0.09 -10.48 16 9 C -0.07 -0.72 4.54 -29.04 -0.13 -0.86 16 10 C -0.16 -1.93 5.00 -36.00 -0.18 -2.11 16 11 C -0.13 -1.55 10.05 -41.20 -0.41 -1.96 16 12 C -0.13 -1.48 10.18 -41.21 -0.42 -1.89 16 13 C -0.22 -2.34 11.23 29.04 0.33 -2.02 16 14 S 0.10 1.22 23.33 -107.50 -2.51 -1.29 16 15 C 0.12 2.04 5.52 -3.72 -0.02 2.02 16 16 C -0.10 -1.64 1.92 -90.50 -0.17 -1.81 16 17 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 18 C 0.16 3.19 5.41 -4.04 -0.02 3.17 16 19 N -0.73 -19.11 5.38 -59.91 -0.32 -19.43 16 20 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 21 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -29.33 13.06 55.49 0.72 -28.60 16 24 Si 0.91 23.03 29.55 -169.99 -5.02 18.01 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.84 6.30 -51.93 -0.33 0.51 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.52 5.93 -51.93 -0.31 0.22 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.11 0.88 7.69 -51.93 -0.40 0.48 16 36 H 0.10 0.82 7.94 -51.93 -0.41 0.41 16 37 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 39 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.10 2.23 6.20 -51.93 -0.32 1.91 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.03 0.53 6.15 -51.93 -0.32 0.21 16 44 H 0.38 10.79 6.89 -40.82 -0.28 10.51 16 45 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 371.53 15.07 5.60 5.60 Total: -1.00 -35.03 371.53 -10.35 -45.38 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -6.99 Total: 8.14 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -1.41 Total: -8.42 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: -0.11 Total: -56.94 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.51 Total: -1.29 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.03 -10.35 -45.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132593608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.196 kcal (2) G-P(sol) polarization free energy of solvation -35.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds