Wall clock time and date at job start Tue Mar 31 2020 14:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.44442 * 2 1 4 4 C 1.53037 * 109.46017 * 240.03439 * 2 1 3 5 5 C 1.53185 * 109.31375 * 301.34045 * 4 2 1 6 6 N 1.46923 * 108.77648 * 305.36496 * 5 4 2 7 7 C 1.34775 * 120.62970 * 233.58442 * 6 5 4 8 8 O 1.21285 * 119.99810 * 180.02562 * 7 6 5 9 9 C 1.50700 * 120.00425 * 0.02562 * 7 6 5 10 10 C 1.50700 * 109.47429 * 179.97438 * 9 7 6 11 11 C 1.38419 * 122.53677 * 89.99560 * 10 9 7 12 12 C 1.33397 * 114.91870 * 179.97438 * 11 10 9 13 13 S 1.75875 * 109.59193 * 0.02562 * 12 11 10 14 14 C 1.33383 * 122.54005 * 269.71304 * 10 9 7 15 15 C 1.46932 * 118.73681 * 53.60958 * 6 5 4 16 16 C 1.53040 * 109.46380 * 119.96293 * 2 1 3 17 17 H 1.08995 * 109.52536 * 178.62680 * 16 2 1 18 18 C 1.53001 * 109.50030 * 298.70803 * 16 2 1 19 19 N 1.46490 * 109.47264 * 184.83408 * 18 16 2 20 20 C 1.36935 * 120.00121 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00139 * 0.02562 * 20 19 18 22 22 C 1.38816 * 120.00401 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99569 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00172 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.46685 * 269.99637 * 24 22 20 26 26 H 1.48494 * 109.47357 * 29.99716 * 24 22 20 27 27 H 1.48502 * 109.47120 * 150.00435 * 24 22 20 28 28 H 1.09004 * 109.46922 * 300.02879 * 1 2 3 29 29 H 1.08994 * 109.47556 * 60.03893 * 1 2 3 30 30 H 1.09006 * 109.47107 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.49602 * 181.39112 * 4 2 1 32 32 H 1.09003 * 109.52275 * 61.31074 * 4 2 1 33 33 H 1.09002 * 109.58729 * 185.57349 * 5 4 2 34 34 H 1.09004 * 109.58411 * 65.15424 * 5 4 2 35 35 H 1.09004 * 109.46553 * 300.00163 * 9 7 6 36 36 H 1.08998 * 109.46820 * 59.99709 * 9 7 6 37 37 H 1.07998 * 122.54408 * 359.96078 * 11 10 9 38 38 H 1.08000 * 125.20183 * 180.02562 * 12 11 10 39 39 H 1.07999 * 125.19983 * 0.02562 * 14 10 9 40 40 H 1.08999 * 109.58040 * 186.60201 * 15 6 5 41 41 H 1.08997 * 109.70455 * 66.25010 * 15 6 5 42 42 H 1.09003 * 109.46836 * 64.83115 * 18 16 2 43 43 H 1.08999 * 109.47071 * 304.84154 * 18 16 2 44 44 H 0.97000 * 120.00577 * 0.02562 * 19 18 16 45 45 H 0.97001 * 119.99885 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0398 -0.7207 -1.2501 5 6 1.4997 -2.1541 -1.2642 6 7 1.8627 -2.8088 0.0000 7 6 2.5158 -3.9877 0.0000 8 8 2.8095 -4.5183 1.0503 9 6 2.8813 -4.6467 -1.3051 10 6 3.5998 -5.9425 -1.0298 11 6 2.9342 -7.1485 -0.8936 12 6 3.7193 -8.1997 -0.6526 13 16 5.3979 -7.6790 -0.5859 14 6 4.9257 -6.0150 -0.9042 15 6 1.4997 -2.1541 1.2643 16 6 2.0399 -0.7207 1.2501 17 1 3.1296 -0.7426 1.2389 18 6 1.5569 0.0194 2.4990 19 7 2.1393 -0.6021 3.6908 20 6 1.8482 -0.1060 4.9335 21 1 1.1889 0.7433 5.0350 22 6 2.4005 -0.6946 6.0629 23 7 3.2044 -1.7294 5.9392 24 14 2.0027 -0.0182 7.7580 25 1 2.9958 1.0248 8.1203 26 1 0.6420 0.5764 7.7470 27 1 2.0543 -1.1180 8.7545 28 1 -0.3633 0.5143 0.8898 29 1 -0.3634 0.5132 -0.8903 30 1 -0.3633 -1.0277 0.0005 31 1 3.1296 -0.7427 -1.2383 32 1 1.6962 -0.1936 -2.1401 33 1 1.9383 -2.7017 -2.0984 34 1 0.4147 -2.1347 -1.3673 35 1 1.9752 -4.8476 -1.8768 36 1 3.5322 -3.9850 -1.8765 37 1 1.8606 -7.2321 -0.9761 38 1 3.3765 -9.2151 -0.5189 39 1 5.6051 -5.1792 -0.9835 40 1 1.9383 -2.7017 2.0984 41 1 0.4150 -2.1348 1.3700 42 1 0.4697 -0.0345 2.5556 43 1 1.8665 1.0632 2.4454 44 1 2.7318 -1.3647 3.5998 45 1 3.4107 -2.0809 5.0589 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132622129.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:07 Heat of formation + Delta-G solvation = 5.913282 kcal Electronic energy + Delta-G solvation = -25367.103283 eV Core-core repulsion = 21897.310890 eV Total energy + Delta-G solvation = -3469.792392 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.48640 -38.73277 -37.38137 -35.12116 -33.64382 -32.03790 -31.30691 -29.67087 -28.41336 -27.42596 -25.25589 -24.71054 -23.21995 -23.05206 -21.36136 -20.00234 -18.77032 -18.20343 -17.62788 -17.27984 -17.02800 -16.02232 -15.46931 -15.04502 -15.03862 -14.76746 -14.47941 -13.77024 -13.61933 -13.54997 -13.28910 -13.13851 -12.87404 -12.71267 -12.64817 -12.49188 -12.36248 -11.96893 -11.84358 -11.67257 -11.25770 -11.10851 -10.85892 -10.73202 -10.62508 -10.60470 -10.27903 -10.13140 -9.93335 -9.66848 -9.08901 -8.85940 -8.81074 -8.46290 -8.44263 -6.92274 -6.01882 -3.02006 0.94295 1.59708 1.90407 2.52687 2.74105 3.17289 3.55589 3.61270 3.75476 4.54527 4.58222 4.70902 4.72846 4.78605 4.82778 4.90891 5.07240 5.13384 5.21301 5.23201 5.25213 5.35985 5.50089 5.52291 5.59915 5.63849 5.70313 5.76490 5.83819 5.87979 5.92678 5.95232 6.06411 6.25558 6.27433 6.29261 6.30766 6.34849 6.50706 6.62471 6.72722 6.84169 7.50107 7.87607 8.31395 8.83988 9.31392 10.17670 10.32472 11.46502 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011003 B = 0.003506 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.203745 B = 7984.930028 C =10083.023361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.084 4.084 3 H 0.073 0.927 4 C -0.129 4.129 5 C 0.105 3.895 6 N -0.613 5.613 7 C 0.510 3.490 8 O -0.522 6.522 9 C -0.079 4.079 10 C -0.085 4.085 11 C -0.120 4.120 12 C -0.214 4.214 13 S 0.094 5.906 14 C -0.197 4.197 15 C 0.121 3.879 16 C -0.103 4.103 17 H 0.071 0.929 18 C 0.167 3.833 19 N -0.744 5.744 20 C -0.334 4.334 21 H 0.064 0.936 22 C -0.045 4.045 23 N -0.942 5.942 24 Si 1.083 2.917 25 H -0.296 1.296 26 H -0.295 1.295 27 H -0.288 1.288 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.138 0.862 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.023 0.977 43 H 0.020 0.980 44 H 0.367 0.633 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.924 -6.170 -23.466 24.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.103 4.103 3 H 0.091 0.909 4 C -0.167 4.167 5 C -0.018 4.018 6 N -0.347 5.347 7 C 0.297 3.703 8 O -0.397 6.397 9 C -0.122 4.122 10 C -0.097 4.097 11 C -0.151 4.151 12 C -0.349 4.349 13 S 0.358 5.642 14 C -0.333 4.333 15 C -0.001 4.001 16 C -0.123 4.123 17 H 0.089 0.911 18 C 0.039 3.961 19 N -0.390 5.390 20 C -0.465 4.465 21 H 0.082 0.918 22 C -0.243 4.243 23 N -0.587 5.587 24 Si 0.914 3.086 25 H -0.224 1.224 26 H -0.222 1.222 27 H -0.214 1.214 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.155 0.845 38 H 0.181 0.819 39 H 0.179 0.821 40 H 0.115 0.885 41 H 0.086 0.914 42 H 0.041 0.959 43 H 0.038 0.962 44 H 0.201 0.799 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.250 -7.237 -20.973 22.188 hybrid contribution -1.480 0.895 -1.901 2.570 sum -1.730 -6.342 -22.874 23.800 Atomic orbital electron populations 1.21986 0.95176 1.01989 1.01829 1.21057 0.96057 0.99354 0.93857 0.90868 1.21945 1.01136 0.95189 0.98475 1.21774 1.00421 0.93731 0.85887 1.48175 1.57799 1.21146 1.07566 1.20516 0.77812 0.80785 0.91213 1.90785 1.52653 1.62934 1.33286 1.20392 1.01496 0.93999 0.96278 1.18332 0.92725 0.94828 1.03855 1.19992 1.00953 0.91332 1.02781 1.25511 0.95922 1.03188 1.10288 1.84190 1.07948 1.01416 1.70667 1.25399 0.98757 1.00073 1.09057 1.21680 0.99838 0.92773 0.85762 1.21701 1.00696 0.94573 0.95294 0.91066 1.20608 0.95966 0.94626 0.84947 1.42429 1.57450 1.37419 1.01744 1.20029 1.27551 1.13770 0.85185 0.91836 1.25771 0.98245 0.97920 1.02351 1.70823 1.37554 1.24932 1.25440 0.83202 0.74974 0.75142 0.75293 1.22385 1.22204 1.21388 0.91823 0.93065 0.92436 0.91546 0.90799 0.90113 0.91071 0.88115 0.88175 0.84468 0.81936 0.82053 0.88454 0.91444 0.95886 0.96188 0.79888 0.93193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.11 37.16 0.30 -1.39 16 2 C -0.08 -1.01 2.71 -90.58 -0.25 -1.26 16 3 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.13 -1.21 5.62 -26.62 -0.15 -1.36 16 5 C 0.10 0.96 5.87 -3.72 -0.02 0.94 16 6 N -0.61 -8.26 2.97 -172.77 -0.51 -8.78 16 7 C 0.51 7.57 7.69 -10.99 -0.08 7.49 16 8 O -0.52 -10.54 15.45 5.55 0.09 -10.46 16 9 C -0.08 -0.81 4.30 -29.04 -0.12 -0.93 16 10 C -0.08 -1.01 4.29 -106.25 -0.46 -1.47 16 11 C -0.12 -1.37 9.98 -41.21 -0.41 -1.79 16 12 C -0.21 -2.29 11.23 29.04 0.33 -1.96 16 13 S 0.09 1.03 23.34 -107.50 -2.51 -1.48 16 14 C -0.20 -2.33 10.98 29.04 0.32 -2.01 16 15 C 0.12 2.04 5.04 -3.71 -0.02 2.02 16 16 C -0.10 -1.68 2.15 -90.50 -0.19 -1.87 16 17 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 18 C 0.17 3.41 5.19 -4.05 -0.02 3.39 16 19 N -0.74 -19.55 5.37 -59.91 -0.32 -19.87 16 20 C -0.33 -9.80 9.99 -15.06 -0.15 -9.95 16 21 H 0.06 1.82 7.83 -52.49 -0.41 1.41 16 22 C -0.04 -1.36 5.50 -17.43 -0.10 -1.46 16 23 N -0.94 -30.60 13.70 55.49 0.76 -29.84 16 24 Si 1.08 26.92 29.92 -169.99 -5.09 21.83 16 25 H -0.30 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.30 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 H 0.06 0.80 6.57 -51.93 -0.34 0.46 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.64 4.98 -51.93 -0.26 0.38 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.53 5.93 -51.93 -0.31 0.22 16 34 H 0.07 0.59 6.69 -51.93 -0.35 0.25 16 35 H 0.10 0.76 7.93 -51.93 -0.41 0.35 16 36 H 0.10 0.79 7.67 -51.93 -0.40 0.40 16 37 H 0.14 1.35 8.06 -52.49 -0.42 0.92 16 38 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.16 1.68 8.06 -52.49 -0.42 1.25 16 40 H 0.10 2.07 6.21 -51.93 -0.32 1.75 16 41 H 0.07 1.11 6.70 -51.93 -0.35 0.76 16 42 H 0.02 0.48 6.72 -51.93 -0.35 0.13 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.37 10.11 5.72 -40.82 -0.23 9.88 16 45 H 0.26 8.35 6.77 -40.82 -0.28 8.08 16 LS Contribution 363.50 15.07 5.48 5.48 Total: -1.00 -36.17 363.50 -9.74 -45.92 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -6.61 Total: 8.81 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -1.03 Total: -11.62 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: -0.08 Total: -58.49 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 26.92 SS G_CDS: -5.09 Total: 21.83 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.51 Total: -1.48 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.17 -9.74 -45.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132622129.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.829 kcal (2) G-P(sol) polarization free energy of solvation -36.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds