Wall clock time and date at job start Tue Mar 31 2020 14:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.44442 * 2 1 4 4 C 1.53037 * 109.46017 * 240.03439 * 2 1 3 5 5 C 1.53185 * 109.31375 * 301.34045 * 4 2 1 6 6 N 1.46923 * 108.77648 * 305.36496 * 5 4 2 7 7 C 1.34775 * 120.62970 * 233.58442 * 6 5 4 8 8 O 1.21285 * 119.99810 * 180.02562 * 7 6 5 9 9 C 1.50700 * 120.00425 * 0.02562 * 7 6 5 10 10 C 1.50700 * 109.47429 * 179.97438 * 9 7 6 11 11 C 1.38419 * 122.53677 * 89.99560 * 10 9 7 12 12 C 1.33397 * 114.91870 * 179.97438 * 11 10 9 13 13 S 1.75875 * 109.59193 * 0.02562 * 12 11 10 14 14 C 1.33383 * 122.54005 * 269.71304 * 10 9 7 15 15 C 1.46932 * 118.73681 * 53.60958 * 6 5 4 16 16 C 1.53040 * 109.46380 * 119.96293 * 2 1 3 17 17 H 1.08995 * 109.52536 * 178.62680 * 16 2 1 18 18 C 1.53001 * 109.50030 * 298.70803 * 16 2 1 19 19 N 1.46490 * 109.47264 * 184.83408 * 18 16 2 20 20 C 1.36935 * 120.00121 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00139 * 0.02562 * 20 19 18 22 22 C 1.38816 * 120.00401 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99569 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00172 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.46685 * 269.99637 * 24 22 20 26 26 H 1.48494 * 109.47357 * 29.99716 * 24 22 20 27 27 H 1.48502 * 109.47120 * 150.00435 * 24 22 20 28 28 H 1.09004 * 109.46922 * 300.02879 * 1 2 3 29 29 H 1.08994 * 109.47556 * 60.03893 * 1 2 3 30 30 H 1.09006 * 109.47107 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.49602 * 181.39112 * 4 2 1 32 32 H 1.09003 * 109.52275 * 61.31074 * 4 2 1 33 33 H 1.09002 * 109.58729 * 185.57349 * 5 4 2 34 34 H 1.09004 * 109.58411 * 65.15424 * 5 4 2 35 35 H 1.09004 * 109.46553 * 300.00163 * 9 7 6 36 36 H 1.08998 * 109.46820 * 59.99709 * 9 7 6 37 37 H 1.07998 * 122.54408 * 359.96078 * 11 10 9 38 38 H 1.08000 * 125.20183 * 180.02562 * 12 11 10 39 39 H 1.07999 * 125.19983 * 0.02562 * 14 10 9 40 40 H 1.08999 * 109.58040 * 186.60201 * 15 6 5 41 41 H 1.08997 * 109.70455 * 66.25010 * 15 6 5 42 42 H 1.09003 * 109.46836 * 64.83115 * 18 16 2 43 43 H 1.08999 * 109.47071 * 304.84154 * 18 16 2 44 44 H 0.97000 * 120.00577 * 0.02562 * 19 18 16 45 45 H 0.97001 * 119.99885 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0398 -0.7207 -1.2501 5 6 1.4997 -2.1541 -1.2642 6 7 1.8627 -2.8088 0.0000 7 6 2.5158 -3.9877 0.0000 8 8 2.8095 -4.5183 1.0503 9 6 2.8813 -4.6467 -1.3051 10 6 3.5998 -5.9425 -1.0298 11 6 2.9342 -7.1485 -0.8936 12 6 3.7193 -8.1997 -0.6526 13 16 5.3979 -7.6790 -0.5859 14 6 4.9257 -6.0150 -0.9042 15 6 1.4997 -2.1541 1.2643 16 6 2.0399 -0.7207 1.2501 17 1 3.1296 -0.7426 1.2389 18 6 1.5569 0.0194 2.4990 19 7 2.1393 -0.6021 3.6908 20 6 1.8482 -0.1060 4.9335 21 1 1.1889 0.7433 5.0350 22 6 2.4005 -0.6946 6.0629 23 7 3.2044 -1.7294 5.9392 24 14 2.0027 -0.0182 7.7580 25 1 2.9958 1.0248 8.1203 26 1 0.6420 0.5764 7.7470 27 1 2.0543 -1.1180 8.7545 28 1 -0.3633 0.5143 0.8898 29 1 -0.3634 0.5132 -0.8903 30 1 -0.3633 -1.0277 0.0005 31 1 3.1296 -0.7427 -1.2383 32 1 1.6962 -0.1936 -2.1401 33 1 1.9383 -2.7017 -2.0984 34 1 0.4147 -2.1347 -1.3673 35 1 1.9752 -4.8476 -1.8768 36 1 3.5322 -3.9850 -1.8765 37 1 1.8606 -7.2321 -0.9761 38 1 3.3765 -9.2151 -0.5189 39 1 5.6051 -5.1792 -0.9835 40 1 1.9383 -2.7017 2.0984 41 1 0.4150 -2.1348 1.3700 42 1 0.4697 -0.0345 2.5556 43 1 1.8665 1.0632 2.4454 44 1 2.7318 -1.3647 3.5998 45 1 3.4107 -2.0809 5.0589 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132622129.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:06 Heat of formation + Delta-G solvation = -17.736891 kcal Electronic energy + Delta-G solvation = -25368.128831 eV Core-core repulsion = 21897.310890 eV Total energy + Delta-G solvation = -3470.817941 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.59457 -39.77953 -38.43176 -36.91685 -35.03119 -33.53442 -32.35394 -31.23830 -29.31474 -28.54622 -26.83589 -25.77158 -25.02285 -24.05260 -22.72297 -21.14302 -19.76099 -19.43086 -19.07404 -18.49770 -18.21283 -17.09373 -16.82980 -16.33183 -16.29165 -15.93606 -15.88524 -15.52301 -14.99892 -14.66106 -14.43418 -14.28472 -13.96929 -13.92971 -13.75385 -13.54511 -13.32297 -12.93331 -12.83294 -12.66272 -12.61586 -12.58988 -12.46857 -12.09202 -11.90777 -11.76988 -11.71408 -11.56841 -11.40292 -11.15173 -10.95269 -10.83564 -9.71656 -9.59382 -9.31292 -9.15162 -8.44547 -5.38355 0.08401 0.76145 1.06011 1.54038 1.59850 1.64878 1.66455 1.80479 2.16080 2.68943 3.36640 3.52895 3.67018 3.76082 3.78886 3.89051 4.01611 4.05031 4.11108 4.24060 4.32100 4.35836 4.47814 4.48227 4.50703 4.58676 4.69033 4.71435 4.73842 4.77362 4.84681 4.97229 5.02533 5.09548 5.14991 5.17791 5.25372 5.36326 5.44937 5.50202 5.51735 5.54448 5.56906 6.41615 6.45060 7.04055 7.20655 7.94164 8.07266 9.06543 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011003 B = 0.003506 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.203745 B = 7984.930028 C =10083.023361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 H 0.076 0.924 4 C -0.123 4.123 5 C 0.097 3.903 6 N -0.608 5.608 7 C 0.502 3.498 8 O -0.589 6.589 9 C -0.068 4.068 10 C -0.098 4.098 11 C -0.137 4.137 12 C -0.217 4.217 13 S 0.087 5.913 14 C -0.217 4.217 15 C 0.131 3.869 16 C -0.089 4.089 17 H 0.047 0.953 18 C 0.165 3.835 19 N -0.760 5.760 20 C -0.336 4.336 21 H 0.070 0.930 22 C -0.108 4.108 23 N -0.975 5.975 24 Si 1.134 2.866 25 H -0.282 1.282 26 H -0.269 1.269 27 H -0.294 1.294 28 H 0.042 0.958 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.113 0.887 33 H 0.119 0.881 34 H 0.090 0.910 35 H 0.137 0.863 36 H 0.131 0.869 37 H 0.152 0.848 38 H 0.184 0.816 39 H 0.169 0.831 40 H 0.041 0.959 41 H 0.069 0.931 42 H 0.028 0.972 43 H 0.020 0.980 44 H 0.356 0.644 45 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.460 -5.009 -26.431 27.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 H 0.095 0.905 4 C -0.161 4.161 5 C -0.024 4.024 6 N -0.341 5.341 7 C 0.292 3.708 8 O -0.469 6.469 9 C -0.109 4.109 10 C -0.111 4.111 11 C -0.167 4.167 12 C -0.352 4.352 13 S 0.351 5.649 14 C -0.352 4.352 15 C 0.008 3.992 16 C -0.109 4.109 17 H 0.066 0.934 18 C 0.038 3.962 19 N -0.405 5.405 20 C -0.467 4.467 21 H 0.088 0.912 22 C -0.299 4.299 23 N -0.623 5.623 24 Si 0.957 3.043 25 H -0.209 1.209 26 H -0.194 1.194 27 H -0.220 1.220 28 H 0.061 0.939 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.131 0.869 33 H 0.137 0.863 34 H 0.108 0.892 35 H 0.155 0.845 36 H 0.148 0.852 37 H 0.170 0.830 38 H 0.202 0.798 39 H 0.187 0.813 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.046 0.954 43 H 0.038 0.962 44 H 0.188 0.812 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.822 -6.019 -24.034 24.843 hybrid contribution -1.036 0.565 -1.024 1.563 sum -2.858 -5.454 -25.058 25.803 Atomic orbital electron populations 1.21955 0.94030 1.02146 1.02437 1.21070 0.96915 0.99219 0.92702 0.90531 1.21954 1.00857 0.95174 0.98124 1.22219 1.01993 0.93738 0.84449 1.48265 1.57033 1.20865 1.07896 1.21448 0.76646 0.80625 0.92125 1.90763 1.55353 1.64758 1.36056 1.20467 1.03484 0.93221 0.93760 1.18644 0.92906 0.95809 1.03718 1.20283 1.01881 0.91445 1.03110 1.25864 0.95550 1.04273 1.09549 1.84157 1.08616 1.01408 1.70702 1.25662 0.99335 1.00650 1.09563 1.21264 0.99251 0.92507 0.86227 1.21548 0.99121 0.94471 0.95784 0.93435 1.20806 0.95819 0.94648 0.84904 1.42714 1.57561 1.37323 1.02853 1.20453 1.26476 1.13272 0.86532 0.91208 1.27382 0.98045 0.97768 1.06683 1.70965 1.40041 1.26988 1.24324 0.82574 0.76376 0.74721 0.70582 1.20865 1.19377 1.22034 0.93868 0.89822 0.92474 0.92088 0.86850 0.86257 0.89216 0.84493 0.85150 0.83040 0.79831 0.81325 0.94068 0.91282 0.95413 0.96200 0.81241 0.95079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.11 71.98 0.58 -2.27 16 2 C -0.08 -1.74 2.71 -10.77 -0.03 -1.77 16 3 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 4 C -0.12 -1.79 5.62 30.67 0.17 -1.61 16 5 C 0.10 1.36 5.87 86.36 0.51 1.87 16 6 N -0.61 -15.77 2.97 -818.91 -2.43 -18.20 16 7 C 0.50 14.74 7.69 87.66 0.67 15.42 16 8 O -0.59 -25.15 15.45 -3.04 -0.05 -25.20 16 9 C -0.07 -1.20 4.30 29.10 0.13 -1.08 16 10 C -0.10 -2.23 4.29 -20.92 -0.09 -2.32 16 11 C -0.14 -3.00 9.98 21.22 0.21 -2.79 16 12 C -0.22 -4.51 11.23 66.72 0.75 -3.76 16 13 S 0.09 1.92 23.34 -56.49 -1.32 0.60 16 14 C -0.22 -5.06 10.98 66.72 0.73 -4.33 16 15 C 0.13 4.56 5.04 86.36 0.44 5.00 16 16 C -0.09 -2.97 2.15 -10.72 -0.02 -2.99 16 17 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 18 C 0.16 6.92 5.19 86.38 0.45 7.37 16 19 N -0.76 -41.77 5.37 -343.47 -1.85 -43.62 16 20 C -0.34 -20.17 9.99 84.03 0.84 -19.33 16 21 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 22 C -0.11 -6.69 5.50 84.86 0.47 -6.23 16 23 N -0.98 -66.01 13.70 21.65 0.30 -65.71 16 24 Si 1.13 54.71 29.92 68.60 2.05 56.76 16 25 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 27 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 28 H 0.04 1.00 6.57 -2.38 -0.02 0.99 16 29 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.06 1.11 4.98 -2.38 -0.01 1.09 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.12 0.84 5.93 -2.39 -0.01 0.83 16 34 H 0.09 1.03 6.69 -2.38 -0.02 1.01 16 35 H 0.14 1.45 7.93 -2.38 -0.02 1.43 16 36 H 0.13 1.54 7.67 -2.39 -0.02 1.52 16 37 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 38 H 0.18 2.82 8.06 -2.91 -0.02 2.80 16 39 H 0.17 3.49 8.06 -2.91 -0.02 3.46 16 40 H 0.04 1.91 6.21 -2.39 -0.01 1.89 16 41 H 0.07 2.33 6.70 -2.39 -0.02 2.32 16 42 H 0.03 1.16 6.72 -2.39 -0.02 1.14 16 43 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.36 21.04 5.72 -92.71 -0.53 20.51 16 45 H 0.24 16.55 6.77 -92.71 -0.63 15.92 16 Total: -1.00 -85.33 363.50 3.12 -82.22 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: 0.61 Total: 31.98 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: 5.80 Total: -18.82 kcal Atomic # 7 Polarization: -123.55 SS G_CDS: -3.98 Total: -127.53 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.05 Total: -25.20 kcal Atomic # 14 Polarization: 54.71 SS G_CDS: 2.05 Total: 56.76 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -1.32 Total: 0.60 kcal Total: -85.33 3.12 -82.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132622129.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.478 kcal (2) G-P(sol) polarization free energy of solvation -85.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds