Wall clock time and date at job start Tue Mar 31 2020 14:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 H 1.09001 * 109.44905 * 2 1 4 4 C 1.53045 * 109.46064 * 240.03350 * 2 1 3 5 5 C 1.53193 * 109.31211 * 178.61201 * 4 2 1 6 6 N 1.46927 * 108.77386 * 54.63774 * 5 4 2 7 7 C 1.34777 * 120.63303 * 126.36982 * 6 5 4 8 8 O 1.21283 * 120.00463 * 179.97438 * 7 6 5 9 9 C 1.50700 * 119.99675 * 359.72079 * 7 6 5 10 10 C 1.50703 * 109.47148 * 180.28037 * 9 7 6 11 11 C 1.38430 * 122.53562 * 269.73396 * 10 9 7 12 12 C 1.33388 * 114.91655 * 179.75510 * 11 10 9 13 13 S 1.75886 * 109.59650 * 0.48527 * 12 11 10 14 14 C 1.33380 * 122.54042 * 90.02262 * 10 9 7 15 15 C 1.46925 * 118.74028 * 306.63705 * 6 5 4 16 16 C 1.52760 * 109.00575 * 53.31181 * 15 6 5 17 17 H 1.09002 * 109.38470 * 65.51582 * 16 15 6 18 18 C 1.53004 * 109.56601 * 185.55135 * 16 15 6 19 19 N 1.46502 * 109.47200 * 294.96623 * 18 16 15 20 20 C 1.36927 * 119.99927 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00538 * 359.97438 * 20 19 18 22 22 C 1.38819 * 120.00273 * 180.02562 * 20 19 18 23 23 N 1.31622 * 119.99209 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00286 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47277 * 90.00090 * 24 22 20 26 26 H 1.48497 * 109.47109 * 210.00136 * 24 22 20 27 27 H 1.48499 * 109.47316 * 329.99806 * 24 22 20 28 28 H 1.08998 * 109.47392 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.47172 * 299.96642 * 1 2 3 30 30 H 1.08998 * 109.47449 * 59.96245 * 1 2 3 31 31 H 1.08996 * 109.49670 * 58.66439 * 4 2 1 32 32 H 1.09000 * 109.52403 * 298.58075 * 4 2 1 33 33 H 1.08997 * 109.59146 * 294.85081 * 5 4 2 34 34 H 1.08999 * 109.58394 * 174.42111 * 5 4 2 35 35 H 1.09009 * 109.47352 * 300.27556 * 9 7 6 36 36 H 1.08998 * 109.47585 * 60.27844 * 9 7 6 37 37 H 1.07997 * 122.53640 * 0.02562 * 11 10 9 38 38 H 1.08000 * 125.20055 * 180.20664 * 12 11 10 39 39 H 1.08001 * 125.20748 * 0.02562 * 14 10 9 40 40 H 1.09000 * 109.59194 * 173.14578 * 15 6 5 41 41 H 1.09004 * 109.59115 * 293.57214 * 15 6 5 42 42 H 1.09002 * 109.46956 * 54.96666 * 18 16 15 43 43 H 1.08999 * 109.47035 * 174.96408 * 18 16 15 44 44 H 0.97003 * 119.99453 * 359.97438 * 19 18 16 45 45 H 0.97007 * 119.99108 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8928 1.0278 0.0000 4 6 2.0398 -0.7208 -1.2501 5 6 3.5713 -0.6885 -1.2643 6 7 4.0678 -1.2488 0.0000 7 6 4.9614 -2.2577 0.0000 8 8 5.3639 -2.7113 1.0503 9 6 5.4560 -2.8262 -1.3051 10 6 6.4342 -3.9390 -1.0297 11 6 7.7950 -3.7195 -0.9020 12 6 8.5196 -4.8116 -0.6541 13 16 7.4638 -6.2166 -0.5837 14 6 6.0551 -5.2108 -0.8961 15 6 3.5671 -0.6923 1.2642 16 6 2.0399 -0.7207 1.2501 17 1 1.6974 -1.7555 1.2386 18 6 1.5027 -0.0188 2.4991 19 7 1.8917 -0.7771 3.6907 20 6 1.5210 -0.3372 4.9333 21 1 0.9423 0.5690 5.0350 22 6 1.8900 -1.0553 6.0625 23 7 2.5966 -2.1589 5.9387 24 14 1.3837 -0.4556 7.7576 25 1 0.0684 -1.0430 8.1181 26 1 2.4021 -0.8726 8.7547 27 1 1.2784 1.0256 7.7476 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5134 0.8904 30 1 -0.3634 0.5144 -0.8896 31 1 1.6572 -0.2207 -2.1398 32 1 1.6977 -1.7557 -1.2389 33 1 3.9142 0.3409 -1.3673 34 1 3.9416 -1.2845 -2.0984 35 1 4.6124 -3.2166 -1.8744 36 1 5.9499 -2.0421 -1.8790 37 1 8.2359 -2.7377 -0.9918 38 1 9.5913 -4.8309 -0.5217 39 1 5.0386 -5.5685 -0.9691 40 1 3.9346 -1.2907 2.0979 41 1 3.9097 0.3369 1.3716 42 1 1.9178 0.9874 2.5572 43 1 0.4157 0.0392 2.4440 44 1 2.4118 -1.5908 3.5994 45 1 2.8541 -2.6609 6.7278 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132622130.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:10 Heat of formation + Delta-G solvation = 2.915971 kcal Electronic energy + Delta-G solvation = -25181.771911 eV Core-core repulsion = 21711.849545 eV Total energy + Delta-G solvation = -3469.922366 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.30694 -38.55948 -37.29517 -34.94379 -33.64952 -31.97897 -31.27143 -29.78188 -28.65487 -27.60377 -25.45729 -23.69272 -23.19320 -22.80226 -21.20329 -20.04835 -19.19318 -18.55939 -17.60711 -17.18290 -16.80495 -15.97901 -15.37433 -14.97879 -14.82604 -14.36276 -14.03776 -13.86761 -13.57276 -13.42708 -13.10567 -13.03977 -12.82955 -12.79327 -12.55940 -12.37463 -12.26258 -11.87274 -11.74232 -11.67704 -11.47858 -10.97167 -10.87377 -10.81673 -10.76868 -10.57116 -10.25541 -10.12757 -9.92412 -9.62239 -9.51269 -8.82666 -8.80475 -8.43359 -8.40627 -6.84165 -5.67797 -2.97429 0.97960 1.63191 1.93857 2.56805 2.81335 3.24212 3.48272 3.52729 3.55252 4.59438 4.61975 4.67529 4.77504 4.83368 4.87691 4.94505 5.11852 5.18936 5.27620 5.27819 5.33178 5.43210 5.55026 5.63574 5.68736 5.69222 5.75092 5.83103 5.92576 5.95944 5.98749 6.04754 6.21468 6.26833 6.31303 6.35046 6.38696 6.47464 6.61671 6.70996 6.84716 6.92955 7.57528 7.76001 8.38962 8.49867 9.60773 10.19296 10.53359 11.54492 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010770 B = 0.003470 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.179314 B = 8068.369663 C =10174.912193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.070 0.930 4 C -0.129 4.129 5 C 0.106 3.894 6 N -0.613 5.613 7 C 0.510 3.490 8 O -0.520 6.520 9 C -0.080 4.080 10 C -0.084 4.084 11 C -0.120 4.120 12 C -0.214 4.214 13 S 0.092 5.908 14 C -0.196 4.196 15 C 0.120 3.880 16 C -0.101 4.101 17 H 0.073 0.927 18 C 0.159 3.841 19 N -0.733 5.733 20 C -0.242 4.242 21 H 0.069 0.931 22 C -0.013 4.013 23 N -0.929 5.929 24 Si 0.905 3.095 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.138 0.862 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.103 0.897 41 H 0.063 0.937 42 H 0.018 0.982 43 H 0.027 0.973 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.085 -1.067 -23.359 24.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.089 0.911 4 C -0.167 4.167 5 C -0.017 4.017 6 N -0.348 5.348 7 C 0.296 3.704 8 O -0.394 6.394 9 C -0.122 4.122 10 C -0.097 4.097 11 C -0.150 4.150 12 C -0.349 4.349 13 S 0.356 5.644 14 C -0.332 4.332 15 C -0.001 4.001 16 C -0.121 4.121 17 H 0.091 0.909 18 C 0.031 3.969 19 N -0.378 5.378 20 C -0.373 4.373 21 H 0.087 0.913 22 C -0.209 4.209 23 N -0.577 5.577 24 Si 0.737 3.263 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.155 0.845 38 H 0.180 0.820 39 H 0.180 0.820 40 H 0.121 0.879 41 H 0.082 0.918 42 H 0.035 0.965 43 H 0.044 0.956 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.508 -2.794 -22.391 23.484 hybrid contribution -0.412 1.591 0.767 1.814 sum 6.096 -1.203 -21.624 22.499 Atomic orbital electron populations 1.21881 0.95003 1.01935 1.01687 1.21085 0.95932 0.99349 0.93966 0.91112 1.21989 0.94703 1.01598 0.98452 1.21740 0.94752 0.99220 0.85984 1.48194 1.43303 1.35696 1.07592 1.20492 0.79199 0.79507 0.91166 1.90794 1.56607 1.58793 1.33234 1.20398 0.98585 0.96849 0.96368 1.18340 0.93979 0.93586 1.03801 1.19996 0.92777 0.99523 1.02738 1.25500 1.03355 0.95765 1.10305 1.84185 0.98064 1.11319 1.70858 1.25397 1.02281 0.96485 1.09027 1.21614 0.93574 0.99082 0.85857 1.21632 0.94670 1.00673 0.95129 0.90896 1.20721 0.96783 0.94017 0.85399 1.42419 1.65445 1.29083 1.00812 1.19196 1.27979 1.06309 0.83818 0.91276 1.24754 1.00817 0.97539 0.97781 1.69684 1.42318 1.17247 1.28493 0.86217 0.77600 0.77898 0.84631 1.21792 1.21796 1.20807 0.92806 0.91635 0.93255 0.90909 0.91499 0.91387 0.90089 0.88191 0.88163 0.84466 0.81973 0.82033 0.87885 0.91838 0.96458 0.95578 0.78121 0.93507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.82 37.15 0.33 -1.39 16 2 C -0.08 -1.01 2.23 -90.58 -0.20 -1.22 16 3 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 4 C -0.13 -1.22 5.36 -26.61 -0.14 -1.36 16 5 C 0.11 0.98 6.35 -3.71 -0.02 0.96 16 6 N -0.61 -8.40 2.98 -173.03 -0.52 -8.91 16 7 C 0.51 7.67 7.69 -10.98 -0.08 7.58 16 8 O -0.52 -10.64 15.45 5.55 0.09 -10.56 16 9 C -0.08 -0.82 4.30 -29.03 -0.12 -0.95 16 10 C -0.08 -1.02 4.29 -106.25 -0.46 -1.47 16 11 C -0.12 -1.38 9.98 -41.21 -0.41 -1.79 16 12 C -0.21 -2.31 11.23 29.04 0.33 -1.99 16 13 S 0.09 1.02 23.34 -107.50 -2.51 -1.49 16 14 C -0.20 -2.35 10.98 29.03 0.32 -2.03 16 15 C 0.12 2.05 5.49 -3.93 -0.02 2.02 16 16 C -0.10 -1.65 1.90 -90.72 -0.17 -1.83 16 17 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 18 C 0.16 3.20 5.41 -4.04 -0.02 3.18 16 19 N -0.73 -19.13 5.38 -59.90 -0.32 -19.46 16 20 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 21 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 23 N -0.93 -29.35 13.06 55.49 0.72 -28.62 16 24 Si 0.91 23.05 29.55 -169.99 -5.02 18.02 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 27 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.84 6.29 -51.92 -0.33 0.52 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.53 5.93 -51.93 -0.31 0.22 16 35 H 0.10 0.81 7.67 -51.92 -0.40 0.41 16 36 H 0.10 0.77 7.93 -51.93 -0.41 0.36 16 37 H 0.14 1.36 8.06 -52.49 -0.42 0.93 16 38 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.10 2.23 6.20 -51.93 -0.32 1.91 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.03 0.53 6.14 -51.93 -0.32 0.21 16 44 H 0.38 10.81 6.89 -40.82 -0.28 10.53 16 45 H 0.25 7.80 8.31 -40.82 -0.34 7.46 16 LS Contribution 371.24 15.07 5.59 5.59 Total: -1.00 -35.07 371.24 -9.89 -44.96 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -6.99 Total: 8.31 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -0.94 Total: -7.85 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: -0.11 Total: -56.99 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.02 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.51 Total: -1.49 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.07 -9.89 -44.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132622130.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.877 kcal (2) G-P(sol) polarization free energy of solvation -35.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds