Wall clock time and date at job start Tue Mar 31 2020 14:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 H 1.09001 * 109.44905 * 2 1 4 4 C 1.53045 * 109.46064 * 240.03350 * 2 1 3 5 5 C 1.53193 * 109.31211 * 178.61201 * 4 2 1 6 6 N 1.46927 * 108.77386 * 54.63774 * 5 4 2 7 7 C 1.34777 * 120.63303 * 126.36982 * 6 5 4 8 8 O 1.21283 * 120.00463 * 179.97438 * 7 6 5 9 9 C 1.50700 * 119.99675 * 359.72079 * 7 6 5 10 10 C 1.50703 * 109.47148 * 180.28037 * 9 7 6 11 11 C 1.38430 * 122.53562 * 269.73396 * 10 9 7 12 12 C 1.33388 * 114.91655 * 179.75510 * 11 10 9 13 13 S 1.75886 * 109.59650 * 0.48527 * 12 11 10 14 14 C 1.33380 * 122.54042 * 90.02262 * 10 9 7 15 15 C 1.46925 * 118.74028 * 306.63705 * 6 5 4 16 16 C 1.52760 * 109.00575 * 53.31181 * 15 6 5 17 17 H 1.09002 * 109.38470 * 65.51582 * 16 15 6 18 18 C 1.53004 * 109.56601 * 185.55135 * 16 15 6 19 19 N 1.46502 * 109.47200 * 294.96623 * 18 16 15 20 20 C 1.36927 * 119.99927 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00538 * 359.97438 * 20 19 18 22 22 C 1.38819 * 120.00273 * 180.02562 * 20 19 18 23 23 N 1.31622 * 119.99209 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00286 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47277 * 90.00090 * 24 22 20 26 26 H 1.48497 * 109.47109 * 210.00136 * 24 22 20 27 27 H 1.48499 * 109.47316 * 329.99806 * 24 22 20 28 28 H 1.08998 * 109.47392 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.47172 * 299.96642 * 1 2 3 30 30 H 1.08998 * 109.47449 * 59.96245 * 1 2 3 31 31 H 1.08996 * 109.49670 * 58.66439 * 4 2 1 32 32 H 1.09000 * 109.52403 * 298.58075 * 4 2 1 33 33 H 1.08997 * 109.59146 * 294.85081 * 5 4 2 34 34 H 1.08999 * 109.58394 * 174.42111 * 5 4 2 35 35 H 1.09009 * 109.47352 * 300.27556 * 9 7 6 36 36 H 1.08998 * 109.47585 * 60.27844 * 9 7 6 37 37 H 1.07997 * 122.53640 * 0.02562 * 11 10 9 38 38 H 1.08000 * 125.20055 * 180.20664 * 12 11 10 39 39 H 1.08001 * 125.20748 * 0.02562 * 14 10 9 40 40 H 1.09000 * 109.59194 * 173.14578 * 15 6 5 41 41 H 1.09004 * 109.59115 * 293.57214 * 15 6 5 42 42 H 1.09002 * 109.46956 * 54.96666 * 18 16 15 43 43 H 1.08999 * 109.47035 * 174.96408 * 18 16 15 44 44 H 0.97003 * 119.99453 * 359.97438 * 19 18 16 45 45 H 0.97007 * 119.99108 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8928 1.0278 0.0000 4 6 2.0398 -0.7208 -1.2501 5 6 3.5713 -0.6885 -1.2643 6 7 4.0678 -1.2488 0.0000 7 6 4.9614 -2.2577 0.0000 8 8 5.3639 -2.7113 1.0503 9 6 5.4560 -2.8262 -1.3051 10 6 6.4342 -3.9390 -1.0297 11 6 7.7950 -3.7195 -0.9020 12 6 8.5196 -4.8116 -0.6541 13 16 7.4638 -6.2166 -0.5837 14 6 6.0551 -5.2108 -0.8961 15 6 3.5671 -0.6923 1.2642 16 6 2.0399 -0.7207 1.2501 17 1 1.6974 -1.7555 1.2386 18 6 1.5027 -0.0188 2.4991 19 7 1.8917 -0.7771 3.6907 20 6 1.5210 -0.3372 4.9333 21 1 0.9423 0.5690 5.0350 22 6 1.8900 -1.0553 6.0625 23 7 2.5966 -2.1589 5.9387 24 14 1.3837 -0.4556 7.7576 25 1 0.0684 -1.0430 8.1181 26 1 2.4021 -0.8726 8.7547 27 1 1.2784 1.0256 7.7476 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5134 0.8904 30 1 -0.3634 0.5144 -0.8896 31 1 1.6572 -0.2207 -2.1398 32 1 1.6977 -1.7557 -1.2389 33 1 3.9142 0.3409 -1.3673 34 1 3.9416 -1.2845 -2.0984 35 1 4.6124 -3.2166 -1.8744 36 1 5.9499 -2.0421 -1.8790 37 1 8.2359 -2.7377 -0.9918 38 1 9.5913 -4.8309 -0.5217 39 1 5.0386 -5.5685 -0.9691 40 1 3.9346 -1.2907 2.0979 41 1 3.9097 0.3369 1.3716 42 1 1.9178 0.9874 2.5572 43 1 0.4157 0.0392 2.4440 44 1 2.4118 -1.5908 3.5994 45 1 2.8541 -2.6609 6.7278 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132622130.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:10 Heat of formation + Delta-G solvation = -19.631820 kcal Electronic energy + Delta-G solvation = -25182.749656 eV Core-core repulsion = 21711.849545 eV Total energy + Delta-G solvation = -3470.900111 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.42135 -39.60133 -38.36988 -36.60006 -35.05430 -33.53535 -32.37146 -31.32788 -29.59229 -28.68869 -27.08652 -25.06154 -24.53037 -23.77121 -22.55802 -21.27037 -20.23191 -19.46889 -19.14276 -18.47804 -18.04042 -17.04930 -16.75608 -16.45614 -15.97538 -15.59262 -15.43576 -15.24792 -15.02519 -14.54238 -14.24237 -14.13596 -14.06765 -13.93233 -13.71285 -13.49370 -13.24095 -13.05024 -12.94525 -12.75221 -12.63912 -12.58893 -12.53716 -12.18111 -11.96689 -11.91047 -11.75459 -11.67997 -11.29057 -11.14925 -10.96351 -10.74494 -9.68808 -9.58454 -9.28472 -9.01041 -7.95716 -5.26121 0.11248 0.78850 1.08680 1.43621 1.46843 1.55346 1.63956 1.70752 2.22185 2.54299 3.37265 3.62243 3.73429 3.83732 3.89812 3.95657 4.06128 4.10421 4.25014 4.32402 4.36594 4.45016 4.51168 4.58881 4.62173 4.64372 4.74482 4.78577 4.81845 4.88597 4.98561 5.00445 5.10695 5.12612 5.15594 5.25777 5.31405 5.46193 5.47834 5.48198 5.54220 5.59821 5.61116 6.24761 6.51372 7.27224 7.30080 8.07302 8.29252 9.27855 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010770 B = 0.003470 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.179314 B = 8068.369663 C =10174.912193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 H 0.082 0.918 4 C -0.123 4.123 5 C 0.099 3.901 6 N -0.609 5.609 7 C 0.502 3.498 8 O -0.589 6.589 9 C -0.068 4.068 10 C -0.098 4.098 11 C -0.137 4.137 12 C -0.217 4.217 13 S 0.086 5.914 14 C -0.216 4.216 15 C 0.128 3.872 16 C -0.087 4.087 17 H 0.047 0.953 18 C 0.156 3.844 19 N -0.748 5.748 20 C -0.246 4.246 21 H 0.079 0.921 22 C -0.079 4.079 23 N -0.973 5.973 24 Si 0.977 3.023 25 H -0.285 1.285 26 H -0.297 1.297 27 H -0.265 1.265 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.119 0.881 35 H 0.130 0.870 36 H 0.137 0.863 37 H 0.152 0.848 38 H 0.184 0.816 39 H 0.169 0.831 40 H 0.045 0.955 41 H 0.066 0.934 42 H 0.022 0.978 43 H 0.033 0.967 44 H 0.369 0.631 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.464 0.805 -26.362 26.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.098 4.098 3 H 0.101 0.899 4 C -0.161 4.161 5 C -0.022 4.022 6 N -0.342 5.342 7 C 0.291 3.709 8 O -0.468 6.468 9 C -0.109 4.109 10 C -0.110 4.110 11 C -0.167 4.167 12 C -0.353 4.353 13 S 0.349 5.651 14 C -0.352 4.352 15 C 0.005 3.995 16 C -0.107 4.107 17 H 0.066 0.934 18 C 0.030 3.970 19 N -0.391 5.391 20 C -0.378 4.378 21 H 0.097 0.903 22 C -0.271 4.271 23 N -0.624 5.624 24 Si 0.805 3.195 25 H -0.212 1.212 26 H -0.224 1.224 27 H -0.190 1.190 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.130 0.870 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.137 0.863 35 H 0.148 0.852 36 H 0.155 0.845 37 H 0.170 0.830 38 H 0.202 0.798 39 H 0.187 0.813 40 H 0.064 0.936 41 H 0.084 0.916 42 H 0.040 0.960 43 H 0.051 0.949 44 H 0.201 0.799 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.841 -0.861 -25.473 26.148 hybrid contribution -0.236 1.050 1.660 1.978 sum 5.605 0.189 -23.813 24.465 Atomic orbital electron populations 1.21857 0.94490 1.01612 1.02312 1.21093 0.96298 0.99627 0.92773 0.89916 1.21991 0.94705 1.01261 0.98163 1.22184 0.94683 1.00899 0.84466 1.48291 1.42690 1.35238 1.07995 1.21427 0.78462 0.78928 0.92075 1.90769 1.59061 1.60957 1.36040 1.20468 0.99447 0.97200 0.93834 1.18655 0.94681 0.94055 1.03652 1.20287 0.92908 1.00424 1.03060 1.25857 1.04469 0.95370 1.09555 1.84148 0.98250 1.11766 1.70888 1.25659 1.02923 0.97023 1.09568 1.21217 0.93953 0.98073 0.86293 1.21473 0.94063 0.99372 0.95774 0.93408 1.20934 0.97120 0.93822 0.85146 1.42688 1.65251 1.29073 1.02075 1.19680 1.26876 1.06176 0.85046 0.90289 1.25664 1.01536 0.97958 1.01975 1.69884 1.44388 1.18960 1.29133 0.85090 0.76913 0.78165 0.79311 1.21176 1.22405 1.18997 0.93629 0.93479 0.90122 0.86980 0.92189 0.89369 0.86294 0.85184 0.84519 0.83002 0.79845 0.81347 0.93610 0.91576 0.96044 0.94947 0.79924 0.94171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 8.82 71.98 0.63 -2.38 16 2 C -0.08 -1.70 2.23 -10.77 -0.02 -1.73 16 3 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 4 C -0.12 -1.80 5.36 30.67 0.16 -1.63 16 5 C 0.10 1.39 6.35 86.36 0.55 1.94 16 6 N -0.61 -16.03 2.98 -819.73 -2.44 -18.47 16 7 C 0.50 14.94 7.69 87.66 0.67 15.62 16 8 O -0.59 -25.46 15.45 -3.04 -0.05 -25.50 16 9 C -0.07 -1.23 4.30 29.10 0.13 -1.10 16 10 C -0.10 -2.25 4.29 -20.92 -0.09 -2.34 16 11 C -0.14 -3.01 9.98 21.22 0.21 -2.80 16 12 C -0.22 -4.55 11.23 66.72 0.75 -3.80 16 13 S 0.09 1.90 23.34 -56.49 -1.32 0.58 16 14 C -0.22 -5.12 10.98 66.72 0.73 -4.39 16 15 C 0.13 4.50 5.49 86.22 0.47 4.97 16 16 C -0.09 -2.87 1.90 -10.86 -0.02 -2.89 16 17 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 18 C 0.16 6.43 5.41 86.38 0.47 6.90 16 19 N -0.75 -40.78 5.38 -343.44 -1.85 -42.63 16 20 C -0.25 -14.48 9.99 84.04 0.84 -13.64 16 21 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 22 C -0.08 -4.83 5.50 84.86 0.47 -4.36 16 23 N -0.97 -64.13 13.06 21.65 0.28 -63.84 16 24 Si 0.98 48.34 29.55 68.60 2.03 50.37 16 25 H -0.28 -13.72 7.11 99.48 0.71 -13.02 16 26 H -0.30 -14.87 7.11 99.48 0.71 -14.17 16 27 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 28 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 1.14 6.29 -2.38 -0.01 1.12 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.12 0.85 5.93 -2.39 -0.01 0.84 16 35 H 0.13 1.58 7.67 -2.38 -0.02 1.56 16 36 H 0.14 1.48 7.93 -2.39 -0.02 1.46 16 37 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 38 H 0.18 2.84 8.06 -2.91 -0.02 2.82 16 39 H 0.17 3.55 8.06 -2.91 -0.02 3.53 16 40 H 0.05 2.15 6.20 -2.39 -0.01 2.13 16 41 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 42 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.03 1.31 6.14 -2.39 -0.01 1.30 16 44 H 0.37 22.18 6.89 -92.71 -0.64 21.54 16 45 H 0.25 15.94 8.31 -92.70 -0.77 15.17 16 Total: -1.00 -82.76 371.24 2.96 -79.80 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: 0.35 Total: 31.34 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 5.95 Total: -11.65 kcal Atomic # 7 Polarization: -120.93 SS G_CDS: -4.00 Total: -124.94 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.05 Total: -25.50 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 2.03 Total: 50.37 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -1.32 Total: 0.58 kcal Total: -82.76 2.96 -79.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132622130.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.168 kcal (2) G-P(sol) polarization free energy of solvation -82.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds