Wall clock time and date at job start Tue Mar 31 2020 13:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50698 * 119.99989 * 2 1 4 4 N 1.46501 * 109.46971 * 125.00130 * 3 2 1 5 5 C 1.46506 * 120.00093 * 262.64437 * 4 3 2 6 6 C 1.50701 * 109.47083 * 270.00360 * 5 4 3 7 7 H 1.07994 * 119.99821 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99702 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99898 * 179.97438 * 8 6 5 10 10 Si 1.86807 * 120.00163 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47032 * 90.00343 * 10 8 6 12 12 H 1.48505 * 109.46988 * 210.00309 * 10 8 6 13 13 H 1.48499 * 109.46778 * 330.00241 * 10 8 6 14 14 C 1.34782 * 120.00169 * 82.64626 * 4 3 2 15 15 O 1.21517 * 119.99797 * 182.99362 * 14 4 3 16 16 C 1.48166 * 119.99845 * 2.99068 * 14 4 3 17 17 C 1.39101 * 119.66824 * 173.18556 * 16 14 4 18 18 C 1.39729 * 118.91816 * 180.25832 * 17 16 14 19 19 C 1.48372 * 120.87144 * 180.02562 * 18 17 16 20 20 C 1.39345 * 120.12363 * 359.70049 * 19 18 17 21 21 C 1.38019 * 119.87742 * 179.74478 * 20 19 18 22 22 C 1.38320 * 120.11960 * 0.54987 * 21 20 19 23 23 C 1.38330 * 120.24773 * 359.70406 * 22 21 20 24 24 C 1.38010 * 120.12265 * 0.02562 * 23 22 21 25 25 C 1.39729 * 118.25648 * 0.02562 * 18 17 16 26 26 C 1.38319 * 119.21469 * 0.02562 * 25 18 17 27 27 N 1.31579 * 121.02479 * 359.97438 * 26 25 18 28 28 H 1.08007 * 120.00005 * 179.97438 * 1 2 3 29 29 H 1.08002 * 120.00535 * 359.97438 * 1 2 3 30 30 H 1.08006 * 119.99893 * 180.02562 * 2 1 3 31 31 H 1.08994 * 109.47476 * 5.00115 * 3 2 1 32 32 H 1.08998 * 109.47500 * 244.99627 * 3 2 1 33 33 H 1.09003 * 109.46860 * 30.00279 * 5 4 3 34 34 H 1.08999 * 109.46973 * 149.99586 * 5 4 3 35 35 H 0.96996 * 119.99781 * 179.97438 * 9 8 6 36 36 H 1.07996 * 120.54455 * 0.25452 * 17 16 14 37 37 H 1.08002 * 120.06233 * 0.02562 * 20 19 18 38 38 H 1.08004 * 119.93944 * 180.27481 * 21 20 19 39 39 H 1.07997 * 119.87553 * 179.72147 * 22 21 20 40 40 H 1.08000 * 119.93782 * 179.97438 * 23 22 21 41 41 H 1.07997 * 120.06427 * 180.02562 * 24 23 22 42 42 H 1.08000 * 120.39703 * 179.97438 * 25 18 17 43 43 H 1.08000 * 119.48797 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3318 1.1314 5 6 2.6159 2.0087 2.3746 6 6 3.0463 3.4516 2.3117 7 1 3.5511 3.8267 1.4338 8 6 2.7964 4.2924 3.3755 9 7 3.1725 5.5515 3.3209 10 14 1.9238 3.6433 4.8943 11 1 2.9277 3.1269 5.8591 12 1 1.1483 4.7406 5.5266 13 1 1.0019 2.5464 4.5045 14 6 4.1972 0.7337 1.0287 15 8 4.9468 0.7087 1.9848 16 6 4.6060 0.1067 -0.2500 17 6 5.9003 -0.3822 -0.3942 18 6 6.2708 -0.9656 -1.6086 19 6 7.6396 -1.5016 -1.8094 20 6 8.5791 -1.4228 -0.7833 21 6 9.8493 -1.9278 -0.9738 22 6 10.1940 -2.5012 -2.1845 23 6 9.2670 -2.5774 -3.2084 24 6 7.9923 -2.0806 -3.0270 25 6 5.3184 -1.0308 -2.6289 26 6 4.0527 -0.5200 -2.4047 27 7 3.7356 0.0232 -1.2490 28 1 -0.5400 -0.9354 -0.0004 29 1 -0.5401 0.9353 0.0004 30 1 1.8499 -0.9354 -0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6213 1.4026 -0.9313 33 1 1.5346 1.9573 2.5021 34 1 3.1047 1.5200 3.2174 35 1 2.9964 6.1431 4.0691 36 1 6.6073 -0.3121 0.4192 37 1 8.3123 -0.9714 0.1609 38 1 10.5769 -1.8712 -0.1776 39 1 11.1904 -2.8911 -2.3308 40 1 9.5416 -3.0257 -4.1518 41 1 7.2692 -2.1410 -3.8269 42 1 5.5677 -1.4741 -3.5817 43 1 3.3130 -0.5685 -3.1901 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159449445.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:40 Heat of formation + Delta-G solvation = 53.545271 kcal Electronic energy + Delta-G solvation = -25894.666071 eV Core-core repulsion = 22291.495205 eV Total energy + Delta-G solvation = -3603.170866 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.90825 -40.42371 -39.46159 -37.40369 -35.18315 -34.63857 -33.76497 -32.78253 -31.76817 -30.71402 -30.09155 -27.07003 -26.04625 -25.18983 -24.22586 -22.81270 -22.56483 -21.24739 -20.27201 -19.13419 -18.68905 -18.12969 -17.68111 -17.01546 -16.68293 -16.45922 -16.35593 -15.98964 -15.59914 -15.42616 -15.22849 -14.94211 -14.74574 -14.43333 -14.27487 -14.22006 -14.01389 -13.79370 -13.55403 -13.18386 -13.03691 -12.85449 -12.53098 -12.24633 -12.17184 -11.94278 -11.83460 -11.77369 -11.40893 -11.24849 -10.86043 -10.42876 -10.28388 -9.99764 -9.90473 -9.45647 -9.35305 -8.36985 -6.42978 -0.55181 -0.23925 0.45453 0.83242 1.30392 1.34764 1.40871 1.44770 1.77976 2.22879 2.28883 2.72710 2.96665 3.04130 3.12975 3.36710 3.61010 3.89133 3.93634 3.99471 4.05579 4.17741 4.25243 4.31586 4.38766 4.52777 4.56139 4.65787 4.66920 4.69766 4.75943 4.85405 5.02363 5.04777 5.07220 5.11570 5.17150 5.40630 5.47678 5.51949 5.56990 5.59257 5.64858 5.81094 6.01118 6.02714 6.19267 6.51295 6.57477 6.75992 7.12913 7.26547 8.80045 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015438 B = 0.003260 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.259978 B = 8588.073084 C = 9872.948711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.145 4.145 3 C 0.130 3.870 4 N -0.574 5.574 5 C 0.224 3.776 6 C -0.539 4.539 7 H 0.027 0.973 8 C 0.015 3.985 9 N -0.943 5.943 10 Si 0.948 3.052 11 H -0.274 1.274 12 H -0.270 1.270 13 H -0.240 1.240 14 C 0.547 3.453 15 O -0.586 6.586 16 C 0.072 3.928 17 C -0.123 4.123 18 C -0.008 4.008 19 C -0.074 4.074 20 C -0.126 4.126 21 C -0.130 4.130 22 C -0.113 4.113 23 C -0.121 4.121 24 C -0.101 4.101 25 C -0.130 4.130 26 C 0.099 3.901 27 N -0.459 5.459 28 H 0.116 0.884 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.065 0.935 32 H 0.124 0.876 33 H 0.050 0.950 34 H 0.022 0.978 35 H 0.270 0.730 36 H 0.129 0.871 37 H 0.112 0.888 38 H 0.137 0.863 39 H 0.149 0.851 40 H 0.157 0.843 41 H 0.156 0.844 42 H 0.185 0.815 43 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.869 -20.960 -18.734 28.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.164 4.164 3 C 0.008 3.992 4 N -0.301 5.301 5 C 0.103 3.897 6 C -0.577 4.577 7 H 0.045 0.955 8 C -0.184 4.184 9 N -0.582 5.582 10 Si 0.770 3.230 11 H -0.199 1.199 12 H -0.195 1.195 13 H -0.163 1.163 14 C 0.334 3.666 15 O -0.467 6.467 16 C -0.064 4.064 17 C -0.144 4.144 18 C -0.016 4.016 19 C -0.074 4.074 20 C -0.144 4.144 21 C -0.148 4.148 22 C -0.131 4.131 23 C -0.139 4.139 24 C -0.119 4.119 25 C -0.149 4.149 26 C -0.060 4.060 27 N -0.172 5.172 28 H 0.134 0.866 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.084 0.916 32 H 0.141 0.859 33 H 0.068 0.932 34 H 0.040 0.960 35 H 0.079 0.921 36 H 0.147 0.853 37 H 0.130 0.870 38 H 0.155 0.845 39 H 0.167 0.833 40 H 0.175 0.825 41 H 0.173 0.827 42 H 0.202 0.798 43 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 5.374 -20.423 -17.961 27.723 hybrid contribution 0.794 0.395 1.295 1.570 sum 6.168 -20.027 -16.665 26.774 Atomic orbital electron populations 1.23966 0.95145 1.02681 1.00285 1.22964 0.95896 0.97565 1.00015 1.21306 0.92049 0.95707 0.90110 1.47898 1.15265 1.50894 1.16083 1.19421 0.96088 0.90797 0.83440 1.21480 1.38748 0.94486 1.03011 0.95464 1.25829 0.96022 0.94747 1.01780 1.70042 1.48457 1.06292 1.33448 0.85720 0.79406 0.79196 0.78710 1.19923 1.19529 1.16340 1.18556 0.81715 0.78921 0.87372 1.90687 1.53428 1.62287 1.40260 1.20744 0.92181 1.00122 0.93356 1.22106 0.95953 0.97413 0.98915 1.19302 0.94328 0.95350 0.92643 1.18758 0.91303 1.01351 0.95993 1.21474 0.94482 0.99702 0.98788 1.21371 0.95858 0.98540 0.98989 1.21666 1.00932 0.97734 0.92746 1.21521 0.92776 0.99253 1.00337 1.21553 0.97919 0.96604 0.95796 1.22829 0.92977 0.98728 1.00348 1.23639 0.96341 0.91860 0.94129 1.68077 1.34217 1.13870 1.00995 0.86616 0.88300 0.88226 0.91612 0.85864 0.93193 0.96041 0.92084 0.85308 0.86988 0.84509 0.83286 0.82518 0.82681 0.79796 0.77677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.57 14.32 67.79 0.97 -3.60 16 2 C -0.15 -4.35 8.69 25.65 0.22 -4.12 16 3 C 0.13 4.77 5.45 85.63 0.47 5.23 16 4 N -0.57 -26.66 2.46 -833.54 -2.05 -28.71 16 5 C 0.22 11.83 4.22 85.63 0.36 12.19 16 6 C -0.54 -33.35 9.94 25.60 0.25 -33.09 16 7 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 8 C 0.01 0.89 5.47 84.65 0.46 1.35 16 9 N -0.94 -61.02 13.96 21.45 0.30 -60.72 16 10 Si 0.95 45.90 27.47 68.60 1.88 47.79 16 11 H -0.27 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 13 H -0.24 -10.60 6.54 99.48 0.65 -9.95 16 14 C 0.55 25.70 7.58 86.88 0.66 26.35 16 15 O -0.59 -31.95 15.90 -3.77 -0.06 -32.01 16 16 C 0.07 2.60 6.62 41.85 0.28 2.88 16 17 C -0.12 -3.97 9.02 22.84 0.21 -3.76 16 18 C -0.01 -0.20 5.91 -19.86 -0.12 -0.32 16 19 C -0.07 -1.54 5.88 -20.04 -0.12 -1.66 16 20 C -0.13 -2.83 9.45 22.48 0.21 -2.62 16 21 C -0.13 -2.28 10.03 22.24 0.22 -2.05 16 22 C -0.11 -1.48 10.04 22.31 0.22 -1.26 16 23 C -0.12 -1.40 10.03 22.24 0.22 -1.18 16 24 C -0.10 -1.41 9.45 22.49 0.21 -1.20 16 25 C -0.13 -2.14 9.51 22.65 0.22 -1.92 16 26 C 0.10 1.86 11.17 84.75 0.95 2.80 16 27 N -0.46 -13.22 4.63 -185.19 -0.86 -14.07 16 28 H 0.12 2.32 8.06 -2.91 -0.02 2.30 16 29 H 0.10 2.43 7.84 -2.91 -0.02 2.40 16 30 H 0.10 3.00 7.53 -2.91 -0.02 2.98 16 31 H 0.07 2.49 7.67 -2.39 -0.02 2.48 16 32 H 0.12 4.29 5.26 -2.95 -0.02 4.28 16 33 H 0.05 2.44 7.13 -2.39 -0.02 2.43 16 34 H 0.02 1.20 6.81 -2.39 -0.02 1.18 16 35 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 36 H 0.13 4.52 5.94 -2.91 -0.02 4.50 16 37 H 0.11 2.81 6.30 -2.91 -0.02 2.79 16 38 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 39 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 40 H 0.16 0.82 8.06 -2.91 -0.02 0.79 16 41 H 0.16 1.15 6.29 -2.91 -0.02 1.14 16 42 H 0.18 1.30 6.33 -2.91 -0.02 1.28 16 43 H 0.21 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -83.17 361.69 6.09 -77.08 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.97 Total: 16.62 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: 5.90 Total: -5.97 kcal Atomic # 7 Polarization: -100.89 SS G_CDS: -2.61 Total: -103.50 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -0.06 Total: -32.01 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.88 Total: 47.79 kcal Total: -83.17 6.09 -77.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159449445.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.627 kcal (2) G-P(sol) polarization free energy of solvation -83.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds