Wall clock time and date at job start Tue Mar 31 2020 14:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.54582 * 2 1 4 4 C 1.53146 * 109.50747 * 239.88285 * 2 1 3 5 5 C 1.53094 * 109.06488 * 169.17071 * 4 2 1 6 6 C 1.51940 * 108.62498 * 50.09150 * 5 4 2 7 7 S 1.70755 * 124.51486 * 163.43414 * 6 5 4 8 8 C 1.75605 * 91.77523 * 180.02562 * 7 6 5 9 9 C 1.46589 * 125.45610 * 180.02562 * 8 7 6 10 10 O 1.21708 * 119.99665 * 179.97438 * 9 8 7 11 11 N 1.34768 * 120.00098 * 359.97062 * 9 8 7 12 12 C 1.46496 * 120.00333 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47585 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.47401 * 180.02562 * 13 12 11 15 15 N 1.46492 * 109.47199 * 179.97438 * 14 13 12 16 16 C 1.36937 * 120.00169 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00090 * 359.97438 * 16 15 14 18 18 C 1.38810 * 120.00307 * 180.02562 * 16 15 14 19 19 N 1.31623 * 119.99949 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00218 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47222 * 89.99477 * 20 18 16 22 22 H 1.48501 * 109.47278 * 209.99689 * 20 18 16 23 23 H 1.48495 * 109.47181 * 329.99996 * 20 18 16 24 24 C 1.36116 * 109.08935 * 359.97438 * 8 7 6 25 25 C 1.35238 * 124.37265 * 343.46421 * 6 5 4 26 26 C 1.52330 * 122.99840 * 359.96576 * 25 6 5 27 27 H 1.09004 * 109.46919 * 180.12322 * 1 2 3 28 28 H 1.09004 * 109.47002 * 300.11638 * 1 2 3 29 29 H 1.08996 * 109.47579 * 60.12102 * 1 2 3 30 30 H 1.09002 * 109.55291 * 289.07107 * 4 2 1 31 31 H 1.09003 * 109.55542 * 49.26859 * 4 2 1 32 32 H 1.08996 * 109.59316 * 169.95222 * 5 4 2 33 33 H 1.09003 * 109.59036 * 290.39239 * 5 4 2 34 34 H 0.97005 * 120.00131 * 359.97438 * 11 9 8 35 35 H 1.08999 * 109.46793 * 300.00304 * 12 11 9 36 36 H 1.09004 * 109.46829 * 59.99876 * 12 11 9 37 37 H 1.09011 * 109.46807 * 299.99953 * 13 12 11 38 38 H 1.08997 * 109.47271 * 59.99285 * 13 12 11 39 39 H 1.08999 * 109.46746 * 299.99993 * 14 13 12 40 40 H 1.09004 * 109.47059 * 59.99678 * 14 13 12 41 41 H 0.97010 * 120.00218 * 359.97438 * 15 14 13 42 42 H 0.96998 * 119.99988 * 180.02562 * 19 18 16 43 43 H 1.08002 * 122.95333 * 180.02562 * 24 8 7 44 44 H 1.08992 * 109.57898 * 222.89246 * 26 25 6 45 45 H 1.09003 * 109.57684 * 102.49074 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0414 -0.7243 -1.2487 5 6 3.5480 -0.4876 -1.3823 6 6 4.2090 -0.8044 -0.0514 7 16 5.8823 -1.0723 0.1584 8 6 5.6793 -1.3365 1.8826 9 6 6.7560 -1.6458 2.8280 10 8 6.5021 -1.8101 4.0069 11 7 8.0270 -1.7483 2.3917 12 6 9.1031 -2.0580 3.3364 13 6 10.4369 -2.1158 2.5892 14 6 11.5606 -2.4398 3.5758 15 7 12.8376 -2.4958 2.8602 16 6 13.9929 -2.7718 3.5417 17 1 13.9626 -2.9478 4.6068 18 6 15.2030 -2.8244 2.8637 19 7 15.2401 -2.6094 1.5657 20 14 16.7790 -3.2001 3.7935 21 1 17.0072 -4.6674 3.8081 22 1 17.9212 -2.5281 3.1235 23 1 16.6613 -2.7037 5.1881 24 6 4.3622 -1.2071 2.2007 25 6 3.5474 -0.9118 1.1232 26 6 2.0409 -0.7235 1.2471 27 1 -0.3633 -1.0277 0.0022 28 1 -0.3633 0.5157 0.8890 29 1 -0.3634 0.5119 -0.8910 30 1 1.8469 -1.7928 -1.1559 31 1 1.5315 -0.3359 -2.1303 32 1 3.9528 -1.1376 -2.1579 33 1 3.7325 0.5547 -1.6429 34 1 8.2293 -1.6178 1.4520 35 1 9.1489 -1.2830 4.1015 36 1 8.9075 -3.0217 3.8067 37 1 10.3913 -2.8907 1.8238 38 1 10.6322 -1.1520 2.1192 39 1 11.6063 -1.6654 4.3414 40 1 11.3651 -3.4039 4.0454 41 1 12.8650 -2.3374 1.9035 42 1 16.0856 -2.6465 1.0919 43 1 3.9864 -1.3249 3.2064 44 1 1.8189 -0.1273 2.1321 45 1 1.5567 -1.6966 1.3289 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175800876.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:04 Heat of formation + Delta-G solvation = -25.871530 kcal Electronic energy + Delta-G solvation = -23299.440125 eV Core-core repulsion = 19828.269439 eV Total energy + Delta-G solvation = -3471.170685 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.06492 -39.36512 -36.25785 -35.73668 -34.36387 -32.44192 -32.01494 -30.26257 -29.27608 -27.18561 -25.74646 -24.19195 -23.35425 -22.52106 -21.29544 -20.99839 -20.21523 -18.76433 -18.11767 -17.04064 -16.44263 -16.03263 -15.72731 -15.18454 -15.06537 -14.73258 -14.55891 -14.47535 -14.11139 -13.82300 -13.46024 -13.28739 -13.11467 -12.96650 -12.77020 -12.58806 -12.49279 -12.24360 -11.71341 -11.67383 -11.45304 -11.10449 -10.98261 -10.96745 -10.92465 -10.81059 -10.78635 -10.62721 -10.18425 -10.01543 -9.70692 -9.18931 -8.88593 -8.87514 -8.63258 -6.93348 -5.77045 -3.05990 0.26167 1.16732 1.61010 2.05736 3.04875 3.08965 3.44374 3.49441 3.51248 4.11522 4.25048 4.30977 4.58877 4.59681 4.60358 4.74858 4.93351 4.98264 5.07489 5.11715 5.20098 5.25762 5.29693 5.33826 5.37002 5.39904 5.50153 5.57615 5.59943 5.61333 5.65969 5.74986 5.91977 5.94827 6.00777 6.04946 6.14628 6.18700 6.31368 6.38020 6.78427 6.82744 7.36308 7.70461 8.05755 8.41868 9.53030 10.10034 10.44773 11.45942 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.036799 B = 0.001799 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.713808 B =15564.094320 C =16253.373567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 H 0.074 0.926 4 C -0.110 4.110 5 C -0.050 4.050 6 C -0.196 4.196 7 S 0.199 5.801 8 C -0.264 4.264 9 C 0.589 3.411 10 O -0.532 6.532 11 N -0.723 5.723 12 C 0.123 3.877 13 C -0.139 4.139 14 C 0.157 3.843 15 N -0.734 5.734 16 C -0.240 4.240 17 H 0.071 0.929 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.909 3.091 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.051 4.051 25 C -0.118 4.118 26 C -0.051 4.051 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.398 0.602 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.022 0.978 40 H 0.022 0.978 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.151 0.849 44 H 0.077 0.923 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.139 5.861 -7.974 33.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 H 0.092 0.908 4 C -0.149 4.149 5 C -0.089 4.089 6 C -0.316 4.316 7 S 0.469 5.531 8 C -0.384 4.384 9 C 0.374 3.626 10 O -0.410 6.410 11 N -0.374 5.374 12 C 0.000 4.000 13 C -0.177 4.177 14 C 0.028 3.972 15 N -0.378 5.378 16 C -0.372 4.372 17 H 0.089 0.911 18 C -0.211 4.211 19 N -0.583 5.583 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.084 4.084 25 C -0.131 4.131 26 C -0.090 4.090 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.232 0.768 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.040 0.960 40 H 0.040 0.960 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.168 0.832 44 H 0.095 0.905 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -30.859 5.692 -7.955 32.372 hybrid contribution -0.096 -0.100 0.636 0.651 sum -30.954 5.592 -7.319 32.296 Atomic orbital electron populations 1.21831 0.94696 1.02020 1.01926 1.21150 0.95658 0.99861 0.94491 0.90787 1.21633 0.93982 1.01274 0.98028 1.20444 0.95154 1.02200 0.91084 1.24692 0.98339 1.08479 1.00070 1.82995 1.03689 1.65156 1.01247 1.24322 0.98360 1.17975 0.97755 1.16930 0.81657 0.77004 0.86981 1.90833 1.83075 1.50648 1.16481 1.45954 1.06831 1.72159 1.12410 1.21419 0.85129 1.01682 0.91769 1.21962 0.93282 1.02682 0.99763 1.20516 0.85326 0.97935 0.93378 1.42331 1.01487 1.85771 1.08189 1.19255 0.85409 1.39992 0.92508 0.91070 1.24752 0.97793 1.02723 0.95782 1.69662 1.25379 1.56507 1.06757 0.86160 0.83281 0.77842 0.78741 1.21691 1.21753 1.20719 1.20587 0.90687 0.96642 1.00457 1.19488 0.97270 1.05213 0.91151 1.20598 0.89031 1.01006 0.98330 0.92511 0.92466 0.92492 0.91337 0.90970 0.90120 0.89908 0.76804 0.91006 0.91004 0.91212 0.91204 0.95976 0.95984 0.78293 0.93518 0.83183 0.90461 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.17 37.16 0.34 -0.27 16 2 C -0.09 -0.49 2.68 -90.56 -0.24 -0.73 16 3 H 0.07 0.43 8.10 -51.93 -0.42 0.00 16 4 C -0.11 -0.55 5.23 -26.61 -0.14 -0.69 16 5 C -0.05 -0.29 6.24 -27.22 -0.17 -0.46 16 6 C -0.20 -1.63 6.16 -34.76 -0.21 -1.85 16 7 S 0.20 1.78 22.09 -107.50 -2.37 -0.59 16 8 C -0.26 -3.09 6.43 -36.98 -0.24 -3.33 16 9 C 0.59 8.38 7.78 -12.90 -0.10 8.28 16 10 O -0.53 -9.34 16.83 5.18 0.09 -9.25 16 11 N -0.72 -9.31 5.55 -61.65 -0.34 -9.65 16 12 C 0.12 1.75 5.67 -4.04 -0.02 1.73 16 13 C -0.14 -2.17 5.44 -26.73 -0.15 -2.31 16 14 C 0.16 3.16 6.26 -4.05 -0.03 3.13 16 15 N -0.73 -18.80 5.60 -59.91 -0.34 -19.13 16 16 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 17 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 18 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 19 N -0.93 -28.40 13.06 55.49 0.72 -27.67 16 20 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 24 C -0.05 -0.54 9.80 -40.33 -0.40 -0.94 16 25 C -0.12 -1.05 5.75 -104.87 -0.60 -1.65 16 26 C -0.05 -0.33 5.42 -27.09 -0.15 -0.47 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.37 8.10 -51.93 -0.42 -0.05 16 31 H 0.07 0.27 8.11 -51.93 -0.42 -0.15 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.40 4.30 7.58 -40.82 -0.31 3.99 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.38 10.20 7.67 -40.82 -0.31 9.89 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.15 1.57 8.05 -52.49 -0.42 1.15 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.47 8.13 -51.93 -0.42 0.04 16 LS Contribution 381.11 15.07 5.74 5.74 Total: -1.00 -33.27 381.11 -11.22 -44.49 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -7.35 Total: 5.59 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -2.35 Total: -7.09 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: 0.05 Total: -56.46 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.09 Total: -9.25 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.37 Total: -0.59 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.27 -11.22 -44.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175800876.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.618 kcal (2) G-P(sol) polarization free energy of solvation -33.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds