Wall clock time and date at job start Tue Mar 31 2020 14:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.99918 * 2 1 4 4 C 1.54324 * 109.87813 * 121.10123 * 2 1 3 5 5 H 1.09002 * 110.71834 * 260.14518 * 4 2 1 6 6 N 1.46494 * 110.72308 * 23.24478 * 4 2 1 7 7 C 1.36944 * 120.00165 * 204.99831 * 6 4 2 8 8 H 1.07993 * 119.99599 * 0.02562 * 7 6 4 9 9 C 1.38806 * 119.99944 * 179.97438 * 7 6 4 10 10 N 1.31622 * 119.99872 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00346 * 0.02562 * 9 7 6 12 12 H 1.48493 * 109.47189 * 89.99699 * 11 9 7 13 13 H 1.48506 * 109.47014 * 209.99855 * 11 9 7 14 14 H 1.48507 * 109.46960 * 329.99751 * 11 9 7 15 15 C 1.55160 * 102.93910 * 141.60979 * 4 2 1 16 16 C 1.55129 * 101.48491 * 324.32988 * 15 4 2 17 17 N 1.47026 * 109.88065 * 238.90513 * 2 1 3 18 18 C 1.34772 * 125.64342 * 61.60972 * 17 2 1 19 19 O 1.21280 * 120.00486 * 359.97438 * 18 17 2 20 20 C 1.50706 * 119.99611 * 179.97438 * 18 17 2 21 21 C 1.53001 * 109.46987 * 179.97438 * 20 18 17 22 22 C 1.53001 * 109.46948 * 179.97438 * 21 20 18 23 23 C 1.50706 * 109.47245 * 180.02562 * 22 21 20 24 24 C 1.38422 * 122.53614 * 270.00220 * 23 22 21 25 25 C 1.33390 * 114.91870 * 179.97438 * 24 23 22 26 26 S 1.75890 * 109.59395 * 359.97438 * 25 24 23 27 27 C 1.33383 * 122.53781 * 89.97185 * 23 22 21 28 28 H 1.08997 * 109.47277 * 179.63819 * 1 2 3 29 29 H 1.08999 * 109.47182 * 299.64036 * 1 2 3 30 30 H 1.09000 * 109.47143 * 59.63568 * 1 2 3 31 31 H 0.97006 * 120.00202 * 24.99952 * 6 4 2 32 32 H 0.96998 * 120.00299 * 180.02562 * 10 9 7 33 33 H 1.09001 * 111.00503 * 82.57171 * 15 4 2 34 34 H 1.08999 * 111.00094 * 206.42237 * 15 4 2 35 35 H 1.09000 * 110.49509 * 278.44866 * 16 15 4 36 36 H 1.09006 * 110.34142 * 156.06456 * 16 15 4 37 37 H 1.08999 * 109.46975 * 60.00508 * 20 18 17 38 38 H 1.09001 * 109.47282 * 299.99974 * 20 18 17 39 39 H 1.09000 * 109.47233 * 60.00442 * 21 20 18 40 40 H 1.09001 * 109.47220 * 300.00173 * 21 20 18 41 41 H 1.08999 * 109.46994 * 60.00682 * 22 21 20 42 42 H 1.09001 * 109.47303 * 300.00124 * 22 21 20 43 43 H 1.08000 * 122.54685 * 359.97438 * 24 23 22 44 44 H 1.07998 * 125.20728 * 180.02562 * 25 24 23 45 45 H 1.07996 * 125.20606 * 359.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0547 -0.7497 1.2427 5 1 2.3499 -0.0462 2.0213 6 7 1.0471 -1.6856 1.7473 7 6 1.0605 -2.0620 3.0639 8 1 1.8137 -1.6685 3.7303 9 6 0.1054 -2.9484 3.5421 10 7 0.1180 -3.3098 4.8077 11 14 -1.1980 -3.6285 2.3897 12 1 -0.7036 -4.8836 1.7689 13 1 -2.4382 -3.9105 3.1563 14 1 -1.4883 -2.6319 1.3276 15 6 3.2875 -1.5144 0.6923 16 6 2.8098 -1.8825 -0.7370 17 7 2.0300 -0.7141 -1.1840 18 6 1.8073 -0.3619 -2.4657 19 8 1.1428 0.6208 -2.7180 20 6 2.3841 -1.1893 -3.5855 21 6 1.9849 -0.5772 -4.9297 22 6 2.5710 -1.4169 -6.0665 23 6 2.1784 -0.8137 -7.3906 24 6 1.0195 -1.1719 -8.0575 25 6 0.8209 -0.5429 -9.2169 26 16 2.1479 0.5716 -9.5181 27 6 2.9209 0.1062 -8.0083 28 1 -0.3633 -1.0276 -0.0065 29 1 -0.3633 0.5082 0.8932 30 1 -0.3633 0.5195 -0.8867 31 1 0.3702 -2.0388 1.1488 32 1 -0.5492 -3.9295 5.1419 33 1 4.1653 -0.8690 0.6603 34 1 3.4850 -2.4112 1.2794 35 1 2.1800 -2.7718 -0.7117 36 1 3.6654 -2.0412 -1.3934 37 1 1.9986 -2.2068 -3.5212 38 1 3.4708 -1.2065 -3.5021 39 1 2.3701 0.4404 -4.9943 40 1 0.8982 -0.5604 -5.0128 41 1 2.1862 -2.4346 -6.0022 42 1 3.6577 -1.4333 -5.9832 43 1 0.3283 -1.9051 -7.6686 44 1 -0.0255 -0.6941 -9.8703 45 1 3.8535 0.5052 -7.6376 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178952113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:44 Heat of formation + Delta-G solvation = -10.320676 kcal Electronic energy + Delta-G solvation = -24596.006955 eV Core-core repulsion = 21125.510606 eV Total energy + Delta-G solvation = -3470.496350 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.31392 -39.46283 -38.87519 -35.82521 -35.09365 -33.55014 -32.28005 -31.41392 -30.55813 -28.25567 -26.85733 -25.25907 -24.68998 -23.52705 -22.42392 -21.03628 -19.97957 -19.74895 -19.50127 -18.50419 -17.94000 -17.45743 -16.77861 -16.42850 -16.09852 -15.68502 -15.57070 -15.07596 -14.77224 -14.47846 -14.34545 -14.22596 -13.99233 -13.84380 -13.63117 -13.33028 -13.29636 -13.17445 -12.94819 -12.69571 -12.57377 -12.44294 -12.41585 -12.34508 -12.24037 -11.96029 -11.71947 -11.63677 -11.53854 -11.50868 -10.97299 -10.73443 -9.68813 -9.62234 -9.30558 -9.25889 -8.00811 -5.33245 0.12484 0.80144 1.11078 1.36399 1.38201 1.45089 1.69540 1.78440 2.07407 2.47581 3.28732 3.51138 3.56942 3.77433 3.89099 3.97306 4.03262 4.17179 4.20714 4.29547 4.33646 4.37109 4.53730 4.55376 4.58319 4.67295 4.72059 4.74503 4.77476 4.83773 4.93265 4.95528 5.03803 5.09638 5.21271 5.23433 5.25843 5.37948 5.40255 5.45425 5.57896 5.64527 5.81168 6.23140 6.64298 7.08628 7.22647 7.84461 8.02591 9.20464 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024730 B = 0.002287 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.947420 B =12238.253590 C =12645.977668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.128 3.872 3 H 0.079 0.921 4 C 0.166 3.834 5 H 0.072 0.928 6 N -0.740 5.740 7 C -0.220 4.220 8 H 0.065 0.935 9 C -0.059 4.059 10 N -0.981 5.981 11 Si 0.942 3.058 12 H -0.276 1.276 13 H -0.300 1.300 14 H -0.260 1.260 15 C -0.148 4.148 16 C 0.106 3.894 17 N -0.613 5.613 18 C 0.518 3.482 19 O -0.587 6.587 20 C -0.127 4.127 21 C -0.088 4.088 22 C -0.054 4.054 23 C -0.109 4.109 24 C -0.145 4.145 25 C -0.218 4.218 26 S 0.078 5.922 27 C -0.221 4.221 28 H 0.042 0.958 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.365 0.635 32 H 0.256 0.744 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.122 0.878 39 H 0.054 0.946 40 H 0.048 0.952 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.150 0.850 44 H 0.180 0.820 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.569 3.536 -28.873 30.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.024 3.976 3 H 0.097 0.903 4 C 0.056 3.944 5 H 0.090 0.910 6 N -0.384 5.384 7 C -0.351 4.351 8 H 0.083 0.917 9 C -0.251 4.251 10 N -0.632 5.632 11 Si 0.771 3.229 12 H -0.202 1.202 13 H -0.227 1.227 14 H -0.185 1.185 15 C -0.189 4.189 16 C -0.016 4.016 17 N -0.347 5.347 18 C 0.309 3.691 19 O -0.468 6.468 20 C -0.167 4.167 21 C -0.127 4.127 22 C -0.093 4.093 23 C -0.122 4.122 24 C -0.175 4.175 25 C -0.353 4.353 26 S 0.342 5.658 27 C -0.356 4.356 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.201 0.799 32 H 0.065 0.935 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.140 0.860 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.167 0.833 44 H 0.197 0.803 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 8.619 5.090 -30.064 31.687 hybrid contribution -1.673 -1.377 1.234 2.494 sum 6.946 3.713 -28.830 29.886 Atomic orbital electron populations 1.21876 0.95933 1.01006 1.01464 1.21800 0.94062 0.96392 0.85345 0.90251 1.21380 0.89109 0.91055 0.92812 0.91042 1.42836 1.34478 1.53760 1.07333 1.19021 1.10349 1.19660 0.86049 0.91700 1.25346 1.01487 1.01137 0.97110 1.69855 1.38779 1.39426 1.15140 0.85626 0.79364 0.79019 0.78940 1.20196 1.22724 1.18507 1.23384 0.98331 1.01816 0.95335 1.22467 0.95649 0.87359 0.96143 1.48808 1.52406 1.28666 1.04778 1.21164 0.79758 0.85199 0.82970 1.90662 1.42126 1.30087 1.83877 1.21726 1.03829 1.00021 0.91099 1.21190 1.00564 0.99013 0.91925 1.20340 1.01979 0.98863 0.88144 1.19179 0.95352 0.98874 0.98772 1.20393 0.98697 1.02969 0.95446 1.25895 1.04062 1.02742 1.02587 1.84264 1.16924 1.42721 1.21895 1.25734 1.06105 1.04485 0.99317 0.93874 0.92074 0.92802 0.79919 0.93485 0.88966 0.90523 0.92004 0.87032 0.87071 0.85995 0.92713 0.93270 0.89485 0.89121 0.83270 0.80269 0.80662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 8.51 71.98 0.61 -4.46 16 2 C 0.13 4.05 3.43 45.34 0.16 4.21 16 3 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 4 C 0.17 5.68 3.48 46.18 0.16 5.84 16 5 H 0.07 2.54 8.09 -2.39 -0.02 2.52 16 6 N -0.74 -31.93 4.35 -317.34 -1.38 -33.31 16 7 C -0.22 -11.75 10.44 84.03 0.88 -10.87 16 8 H 0.07 3.77 8.06 -2.91 -0.02 3.75 16 9 C -0.06 -3.37 5.50 84.86 0.47 -2.90 16 10 N -0.98 -61.24 13.97 21.65 0.30 -60.93 16 11 Si 0.94 44.62 27.74 68.60 1.90 46.52 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 13 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 14 H -0.26 -11.43 6.41 99.48 0.64 -10.79 16 15 C -0.15 -3.97 6.78 32.06 0.22 -3.75 16 16 C 0.11 2.37 6.68 86.93 0.58 2.95 16 17 N -0.61 -16.45 3.06 -787.63 -2.41 -18.87 16 18 C 0.52 13.85 7.64 87.66 0.67 14.52 16 19 O -0.59 -20.51 15.02 -3.03 -0.05 -20.56 16 20 C -0.13 -2.08 4.70 29.85 0.14 -1.94 16 21 C -0.09 -1.56 4.49 30.59 0.14 -1.42 16 22 C -0.05 -0.67 5.47 29.85 0.16 -0.51 16 23 C -0.11 -1.73 5.06 -20.92 -0.11 -1.83 16 24 C -0.14 -2.27 9.98 21.22 0.21 -2.06 16 25 C -0.22 -3.18 11.23 66.72 0.75 -2.43 16 26 S 0.08 1.16 23.34 -56.49 -1.32 -0.15 16 27 C -0.22 -3.39 10.98 66.72 0.73 -2.65 16 28 H 0.04 1.61 6.09 -2.39 -0.01 1.59 16 29 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.05 1.92 6.88 -2.39 -0.02 1.91 16 31 H 0.37 15.74 3.53 -92.70 -0.33 15.41 16 32 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 33 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.08 2.32 8.14 -2.39 -0.02 2.31 16 35 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.11 1.60 7.48 -2.38 -0.02 1.58 16 37 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.12 1.31 7.85 -2.39 -0.02 1.29 16 39 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 40 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 41 H 0.09 0.90 8.13 -2.39 -0.02 0.88 16 42 H 0.09 0.84 8.12 -2.39 -0.02 0.82 16 43 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 44 H 0.18 1.83 8.06 -2.91 -0.02 1.81 16 45 H 0.18 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -70.48 374.21 3.40 -67.09 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: 0.58 Total: 27.54 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 5.77 Total: -7.33 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -3.49 Total: -113.11 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.05 Total: -20.56 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.90 Total: 46.52 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -1.32 Total: -0.15 kcal Total: -70.48 3.40 -67.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178952113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.765 kcal (2) G-P(sol) polarization free energy of solvation -70.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds