Wall clock time and date at job start Tue Mar 31 2020 14:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.99873 * 2 1 4 4 C 1.54330 * 109.78457 * 121.16909 * 2 1 3 5 5 H 1.08999 * 110.67137 * 215.88127 * 4 2 1 6 6 N 1.46507 * 110.84783 * 339.02933 * 4 2 1 7 7 C 1.36929 * 120.00008 * 200.14158 * 6 4 2 8 8 H 1.08007 * 120.00108 * 0.02562 * 7 6 4 9 9 C 1.38814 * 120.00015 * 179.97438 * 7 6 4 10 10 N 1.31617 * 119.99939 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99801 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47544 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46840 * 120.00558 * 11 9 7 14 14 H 1.48493 * 109.47015 * 240.00141 * 11 9 7 15 15 C 1.55155 * 103.01871 * 97.49491 * 4 2 1 16 16 C 1.54903 * 101.58157 * 35.30986 * 15 4 2 17 17 N 1.47021 * 109.88114 * 238.91122 * 2 1 3 18 18 C 1.34777 * 125.64866 * 59.55421 * 17 2 1 19 19 O 1.21279 * 120.00166 * 359.72553 * 18 17 2 20 20 C 1.50706 * 120.00142 * 179.71797 * 18 17 2 21 21 C 1.52999 * 109.46957 * 180.02562 * 20 18 17 22 22 C 1.53006 * 109.46626 * 180.02562 * 21 20 18 23 23 C 1.50699 * 109.46866 * 179.97438 * 22 21 20 24 24 C 1.33387 * 125.20302 * 89.99972 * 23 22 21 25 25 C 1.38427 * 114.92248 * 179.97438 * 24 23 22 26 26 C 1.33389 * 114.91962 * 359.97438 * 25 24 23 27 27 S 1.75885 * 125.20377 * 269.69635 * 23 22 21 28 28 H 1.08992 * 109.47084 * 179.63984 * 1 2 3 29 29 H 1.09001 * 109.46772 * 299.63857 * 1 2 3 30 30 H 1.08999 * 109.47207 * 59.63048 * 1 2 3 31 31 H 0.97001 * 119.99911 * 20.14114 * 6 4 2 32 32 H 0.97003 * 120.00031 * 179.97438 * 10 9 7 33 33 H 1.09007 * 111.00761 * 277.23201 * 15 4 2 34 34 H 1.09002 * 111.03684 * 153.40006 * 15 4 2 35 35 H 1.09008 * 110.36647 * 204.15177 * 16 15 4 36 36 H 1.09000 * 110.46272 * 81.87701 * 16 15 4 37 37 H 1.08993 * 109.46700 * 59.99973 * 20 18 17 38 38 H 1.09000 * 109.46974 * 300.00347 * 20 18 17 39 39 H 1.08993 * 109.47839 * 60.00178 * 21 20 18 40 40 H 1.09000 * 109.47160 * 299.99740 * 21 20 18 41 41 H 1.09000 * 109.47050 * 299.99699 * 22 21 20 42 42 H 1.09001 * 109.46801 * 59.99811 * 22 21 20 43 43 H 1.08000 * 122.54441 * 359.95442 * 24 23 22 44 44 H 1.07997 * 122.53884 * 179.97438 * 25 24 23 45 45 H 1.07999 * 125.20312 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0524 -0.7516 1.2426 5 1 2.9602 -0.2828 1.6224 6 7 1.0259 -0.8102 2.2862 7 6 1.3840 -1.0490 3.5861 8 1 2.4233 -1.1937 3.8421 9 6 0.4115 -1.1040 4.5751 10 7 -0.8549 -0.9272 4.2632 11 14 0.9002 -1.4291 6.3486 12 1 2.3737 -1.5912 6.4343 13 1 0.4783 -0.2848 7.1958 14 1 0.2368 -2.6691 6.8254 15 6 2.3563 -2.1697 0.6912 16 6 2.8613 -1.8464 -0.7371 17 7 2.0300 -0.7139 -1.1840 18 6 1.7752 -0.3842 -2.4657 19 8 1.0746 0.5730 -2.7179 20 6 2.3611 -1.2050 -3.5857 21 6 1.9212 -0.6213 -4.9298 22 6 2.5156 -1.4550 -6.0668 23 6 2.0819 -0.8805 -7.3907 24 6 2.7414 0.0544 -8.0764 25 6 2.1500 0.4278 -9.2710 26 6 1.0104 -0.2043 -9.5556 27 16 0.6324 -1.3456 -8.2718 28 1 -0.3633 -1.0276 -0.0065 29 1 -0.3633 0.5082 0.8932 30 1 -0.3633 0.5196 -0.8866 31 1 0.0926 -0.6799 2.0564 32 1 -1.5346 -0.9660 4.9543 33 1 1.4523 -2.7779 0.6576 34 1 3.1327 -2.6598 1.2785 35 1 2.7177 -2.7047 -1.3936 36 1 3.9125 -1.5593 -0.7136 37 1 2.0108 -2.2338 -3.5038 38 1 3.4490 -1.1853 -3.5199 39 1 2.2719 0.4074 -5.0115 40 1 0.8334 -0.6407 -4.9958 41 1 3.6034 -1.4361 -6.0010 42 1 2.1645 -2.4837 -5.9849 43 1 3.6666 0.4875 -7.7260 44 1 2.5788 1.1743 -9.9230 45 1 0.4133 -0.0429 -10.4409 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180089302.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:41 Heat of formation + Delta-G solvation = 4.224168 kcal Electronic energy + Delta-G solvation = -24238.707046 eV Core-core repulsion = 20768.841408 eV Total energy + Delta-G solvation = -3469.865638 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.03874 -38.31977 -37.57113 -34.89267 -34.18135 -31.82661 -30.79213 -30.49231 -28.86610 -26.86252 -25.21260 -24.13416 -23.32137 -22.57593 -21.64761 -19.56497 -19.47184 -18.58680 -17.59799 -17.34515 -16.66526 -16.09898 -15.73390 -15.29591 -15.03322 -14.52216 -14.10021 -13.84952 -13.68963 -13.41978 -13.13645 -13.08790 -12.71854 -12.64345 -12.51781 -12.11552 -11.92816 -11.91221 -11.71952 -11.56779 -11.47955 -11.20341 -11.06596 -10.97962 -10.83936 -10.81461 -10.46339 -10.20483 -9.97673 -9.73574 -9.46090 -8.96793 -8.89072 -8.72852 -8.37576 -7.03540 -5.82996 -3.12774 0.73950 1.37850 1.75174 2.48529 2.83143 3.18715 3.39801 3.45556 3.47855 4.39734 4.53852 4.55166 4.72877 4.80553 4.96442 5.02310 5.10681 5.14780 5.27092 5.31458 5.36087 5.41214 5.45165 5.50175 5.54372 5.59992 5.65365 5.79402 5.83080 5.96298 6.03724 6.05620 6.10579 6.14282 6.22995 6.24385 6.32607 6.55474 6.57252 6.72326 6.83990 6.99203 7.65358 7.80664 8.35172 8.39406 9.47190 10.02592 10.37501 11.39535 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.038503 B = 0.001984 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.032476 B =14109.275029 C =14336.026200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.128 3.872 3 H 0.070 0.930 4 C 0.173 3.827 5 H 0.062 0.938 6 N -0.718 5.718 7 C -0.243 4.243 8 H 0.072 0.928 9 C -0.012 4.012 10 N -0.931 5.931 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.292 1.292 15 C -0.154 4.154 16 C 0.098 3.902 17 N -0.611 5.611 18 C 0.524 3.476 19 O -0.544 6.544 20 C -0.136 4.136 21 C -0.098 4.098 22 C -0.051 4.051 23 C -0.165 4.165 24 C -0.145 4.145 25 C -0.132 4.132 26 C -0.220 4.220 27 S 0.095 5.905 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.391 0.609 32 H 0.256 0.744 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.693 -2.376 -25.462 27.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.024 3.976 3 H 0.088 0.912 4 C 0.061 3.939 5 H 0.080 0.920 6 N -0.361 5.361 7 C -0.374 4.374 8 H 0.090 0.910 9 C -0.208 4.208 10 N -0.578 5.578 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.219 1.219 15 C -0.195 4.195 16 C -0.025 4.025 17 N -0.345 5.345 18 C 0.313 3.687 19 O -0.422 6.422 20 C -0.176 4.176 21 C -0.136 4.136 22 C -0.090 4.090 23 C -0.282 4.282 24 C -0.175 4.175 25 C -0.163 4.163 26 C -0.356 4.356 27 S 0.359 5.641 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.229 0.771 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.157 0.843 44 H 0.156 0.844 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 7.175 -2.879 -25.250 26.407 hybrid contribution 1.068 0.760 0.639 1.458 sum 8.243 -2.119 -24.611 26.041 Atomic orbital electron populations 1.21992 0.94606 1.02367 1.02632 1.21813 0.95398 0.95707 0.84632 0.91198 1.21179 0.93172 0.92063 0.87470 0.92022 1.42684 1.05156 1.85269 1.03023 1.19281 0.93014 1.41111 0.84024 0.91011 1.24768 0.95312 1.02553 0.98176 1.69670 0.99290 1.56398 1.32491 0.86102 0.77504 0.77425 0.85025 1.20518 1.21840 1.21863 1.23544 1.01653 1.01301 0.92995 1.22369 0.94403 0.88502 0.97266 1.48660 1.50090 1.30612 1.05132 1.20247 0.80933 0.85112 0.82415 1.90684 1.38832 1.29334 1.83312 1.21651 1.02180 1.00376 0.93382 1.21348 1.01828 0.99678 0.90789 1.20220 1.01243 0.99049 0.88502 1.24527 0.99060 1.03279 1.01358 1.20137 1.02379 0.99380 0.95571 1.20175 0.96003 1.02101 0.98019 1.25598 1.02425 1.03646 1.03892 1.84371 1.24801 1.40716 1.14258 0.92578 0.90324 0.92150 0.77098 0.93422 0.90687 0.90630 0.91385 0.91712 0.89015 0.89027 0.90750 0.90891 0.89796 0.90606 0.84326 0.84431 0.82069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 7.93 37.16 0.29 -2.72 16 2 C 0.13 2.28 3.49 -66.95 -0.23 2.04 16 3 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 4 C 0.17 3.29 3.45 -66.09 -0.23 3.07 16 5 H 0.06 1.17 8.12 -51.93 -0.42 0.75 16 6 N -0.72 -17.28 5.02 -51.64 -0.26 -17.54 16 7 C -0.24 -6.50 9.98 -15.06 -0.15 -6.65 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 9 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 10 N -0.93 -27.54 13.06 55.49 0.72 -26.82 16 11 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 C -0.15 -2.45 6.77 -24.59 -0.17 -2.61 16 16 C 0.10 1.22 6.69 -2.54 -0.02 1.20 16 17 N -0.61 -9.18 3.08 -163.01 -0.50 -9.68 16 18 C 0.52 7.76 7.63 -10.98 -0.08 7.68 16 19 O -0.54 -10.05 14.87 5.56 0.08 -9.97 16 20 C -0.14 -1.35 4.71 -27.88 -0.13 -1.48 16 21 C -0.10 -0.98 4.49 -26.73 -0.12 -1.10 16 22 C -0.05 -0.39 5.71 -27.88 -0.16 -0.55 16 23 C -0.16 -1.48 5.76 -36.00 -0.21 -1.69 16 24 C -0.14 -1.24 10.05 -41.21 -0.41 -1.66 16 25 C -0.13 -1.07 10.18 -41.21 -0.42 -1.49 16 26 C -0.22 -1.76 11.23 29.04 0.33 -1.44 16 27 S 0.10 0.84 23.33 -107.50 -2.51 -1.67 16 28 H 0.06 1.09 8.05 -51.93 -0.42 0.67 16 29 H 0.08 1.63 6.73 -51.93 -0.35 1.28 16 30 H 0.06 1.16 6.74 -51.93 -0.35 0.81 16 31 H 0.39 10.00 4.94 -40.82 -0.20 9.80 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 0.69 7.48 -51.92 -0.39 0.30 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.78 7.85 -51.93 -0.41 0.37 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 40 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 44 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 45 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 377.21 15.07 5.68 5.68 Total: -1.00 -31.66 377.21 -10.76 -42.41 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -7.15 Total: 8.54 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -1.81 Total: -7.81 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.04 Total: -54.04 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.08 Total: -9.97 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.51 Total: -1.67 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.66 -10.76 -42.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180089302.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.639 kcal (2) G-P(sol) polarization free energy of solvation -31.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds