Wall clock time and date at job start Tue Mar 31 2020 14:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.30473 * 2 1 4 4 C 1.54388 * 110.34645 * 237.82490 * 2 1 3 5 5 N 1.48144 * 104.61752 * 264.99668 * 4 2 1 6 6 C 1.34774 * 127.83877 * 140.39096 * 5 4 2 7 7 O 1.21287 * 120.00037 * 180.02562 * 6 5 4 8 8 C 1.50699 * 120.00273 * 0.02562 * 6 5 4 9 9 C 1.50697 * 109.47570 * 179.97438 * 8 6 5 10 10 C 1.38416 * 122.53857 * 269.74241 * 9 8 6 11 11 C 1.33399 * 114.91897 * 179.75951 * 10 9 8 12 12 S 1.75881 * 109.59089 * 0.47354 * 11 10 9 13 13 C 1.33391 * 122.53988 * 90.02261 * 9 8 6 14 14 C 1.48149 * 104.32308 * 320.41109 * 5 4 2 15 15 C 1.54288 * 110.34384 * 122.28677 * 2 1 3 16 16 C 1.53002 * 110.34048 * 0.02562 * 15 2 1 17 17 C 1.53000 * 110.34341 * 237.74432 * 15 2 1 18 18 N 1.46498 * 109.47070 * 179.97438 * 17 15 2 19 19 C 1.36946 * 119.99966 * 180.02562 * 18 17 15 20 20 H 1.07997 * 119.99609 * 359.97438 * 19 18 17 21 21 C 1.38815 * 119.99692 * 179.97438 * 19 18 17 22 22 N 1.31617 * 119.99260 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00220 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47005 * 89.99818 * 23 21 19 25 25 H 1.48500 * 109.46865 * 209.99735 * 23 21 19 26 26 H 1.48496 * 109.47235 * 329.99771 * 23 21 19 27 27 H 1.09002 * 109.47153 * 180.72077 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.72268 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.72249 * 1 2 3 30 30 H 1.08996 * 110.40209 * 23.78035 * 4 2 1 31 31 H 1.08998 * 110.40957 * 146.21314 * 4 2 1 32 32 H 1.08999 * 109.47031 * 300.00466 * 8 6 5 33 33 H 1.09001 * 109.47192 * 59.99897 * 8 6 5 34 34 H 1.07995 * 122.54201 * 359.97438 * 10 9 8 35 35 H 1.07997 * 125.20062 * 180.20244 * 11 10 9 36 36 H 1.08004 * 125.20074 * 359.97438 * 13 9 8 37 37 H 1.09002 * 110.40702 * 158.36958 * 14 5 4 38 38 H 1.08992 * 110.40748 * 280.79769 * 14 5 4 39 39 H 1.08995 * 109.47060 * 60.00104 * 16 15 2 40 40 H 1.09001 * 109.47310 * 180.02562 * 16 15 2 41 41 H 1.09005 * 109.47094 * 299.99910 * 16 15 2 42 42 H 1.08997 * 109.47252 * 299.99948 * 17 15 2 43 43 H 1.09003 * 109.47388 * 59.99948 * 17 15 2 44 44 H 0.96996 * 120.00065 * 359.97438 * 18 17 15 45 45 H 0.97002 * 119.99503 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0668 -0.7708 -1.2252 5 7 2.3140 -2.1431 -0.7247 6 6 2.0771 -3.3091 -1.3576 7 8 2.3354 -4.3599 -0.8097 8 6 1.4912 -3.3075 -2.7461 9 6 1.3270 -4.7273 -3.2238 10 6 2.3188 -5.3987 -3.9178 11 6 2.0140 -6.6506 -4.2632 12 16 0.3892 -7.0358 -3.7109 13 6 0.2129 -5.4304 -3.0146 14 6 2.8802 -1.9428 0.6296 15 6 2.0664 -0.7727 1.2230 16 6 0.9061 -1.3060 2.0658 17 6 2.9691 0.1287 2.0676 18 7 3.4667 -0.6230 3.2224 19 6 4.2987 -0.0179 4.1264 20 1 4.5883 1.0132 3.9876 21 6 4.7698 -0.7300 5.2209 22 7 5.5698 -0.1485 6.0893 23 14 4.2694 -2.5137 5.4604 24 1 5.2476 -3.3981 4.7778 25 1 4.2440 -2.8301 6.9111 26 1 2.9187 -2.7308 4.8827 27 1 -0.3633 -1.0276 0.0129 28 1 -0.3633 0.5026 -0.8964 29 1 -0.3634 0.5250 0.8835 30 1 1.3224 -0.7850 -2.0213 31 1 2.9950 -0.3226 -1.5795 32 1 0.5192 -2.8145 -2.7297 33 1 2.1587 -2.7722 -3.4214 34 1 3.2686 -4.9446 -4.1583 35 1 2.6638 -7.3231 -4.8034 36 1 -0.6632 -5.0692 -2.4965 37 1 2.7495 -2.8411 1.2329 38 1 3.9354 -1.6776 0.5649 39 1 0.2961 -1.9769 1.4610 40 1 1.3005 -1.8484 2.9251 41 1 0.2953 -0.4723 2.4121 42 1 3.8111 0.4676 1.4641 43 1 2.3998 0.9912 2.4139 44 1 3.2063 -1.5489 3.3472 45 1 5.8992 -0.6462 6.8540 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180488969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:55 Heat of formation + Delta-G solvation = 16.880921 kcal Electronic energy + Delta-G solvation = -25351.099551 eV Core-core repulsion = 21881.782751 eV Total energy + Delta-G solvation = -3469.316800 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.51243 -38.99500 -37.50083 -34.99090 -33.20444 -31.68246 -31.43519 -30.02967 -28.57960 -27.31383 -25.67770 -25.60421 -23.43132 -22.85176 -21.11021 -19.71510 -18.89452 -18.62551 -17.81555 -17.64323 -16.93009 -16.06883 -15.71986 -15.04899 -14.61659 -14.58232 -14.20011 -14.02182 -13.65828 -13.43176 -13.25548 -13.15253 -12.86659 -12.79820 -12.57112 -12.39526 -12.25671 -12.17293 -11.85250 -11.72801 -11.47312 -11.41640 -11.25941 -10.99242 -10.84930 -10.46082 -10.41722 -10.25148 -10.00622 -9.84714 -9.55703 -8.98085 -8.89713 -8.65939 -8.57023 -7.22676 -5.76542 -3.11846 0.82278 1.47497 1.78300 2.40490 2.63279 3.07616 3.39479 3.43227 3.48027 4.38232 4.49156 4.56531 4.60429 4.67359 4.79187 4.82729 4.99849 5.14520 5.17157 5.24709 5.30061 5.37597 5.38288 5.41622 5.47866 5.55950 5.67566 5.73290 5.79075 5.81011 5.90966 5.94329 6.02680 6.10383 6.12023 6.16711 6.24113 6.28946 6.47252 6.53583 6.64113 6.70830 7.57800 7.99319 8.17668 8.42605 9.21582 9.94199 10.13522 11.41896 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016366 B = 0.003092 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.419631 B = 9054.372613 C =10044.065146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.091 0.909 4 C 0.104 3.896 5 N -0.622 5.622 6 C 0.532 3.468 7 O -0.532 6.532 8 C -0.076 4.076 9 C -0.083 4.083 10 C -0.120 4.120 11 C -0.213 4.213 12 S 0.092 5.908 13 C -0.198 4.198 14 C 0.116 3.884 15 C -0.079 4.079 16 C -0.134 4.134 17 C 0.173 3.827 18 N -0.755 5.755 19 C -0.244 4.244 20 H 0.090 0.910 21 C 0.006 3.994 22 N -0.934 5.934 23 Si 0.880 3.120 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.277 1.277 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.139 0.861 35 H 0.163 0.837 36 H 0.162 0.838 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.049 0.951 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.029 0.971 43 H 0.031 0.969 44 H 0.361 0.639 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.134 -5.694 -24.528 28.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.109 0.891 4 C -0.020 4.020 5 N -0.356 5.356 6 C 0.320 3.680 7 O -0.408 6.408 8 C -0.119 4.119 9 C -0.096 4.096 10 C -0.151 4.151 11 C -0.348 4.348 12 S 0.355 5.645 13 C -0.334 4.334 14 C -0.006 4.006 15 C -0.081 4.081 16 C -0.191 4.191 17 C 0.045 3.955 18 N -0.401 5.401 19 C -0.373 4.373 20 H 0.108 0.892 21 C -0.190 4.190 22 N -0.582 5.582 23 Si 0.710 3.290 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.203 1.203 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.156 0.844 35 H 0.181 0.819 36 H 0.179 0.821 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.047 0.953 43 H 0.049 0.951 44 H 0.195 0.805 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.804 -7.517 -24.280 28.924 hybrid contribution 0.735 0.035 0.515 0.897 sum -13.069 -7.482 -23.766 28.135 Atomic orbital electron populations 1.21921 0.94509 1.01920 1.01636 1.22126 0.96279 0.99644 0.93598 0.89110 1.22529 1.00657 0.81875 0.96894 1.49028 1.63245 1.05328 1.18037 1.20094 0.78444 0.82215 0.87227 1.90747 1.52206 1.30327 1.67560 1.20329 1.03153 0.94230 0.94169 1.18337 0.93786 0.96496 1.00979 1.20020 1.00239 0.94411 1.00388 1.25520 0.99946 1.00400 1.08952 1.84190 1.12227 1.14146 1.53900 1.25394 1.03141 0.97169 1.07674 1.22491 0.97440 0.98662 0.81998 1.21762 0.96226 0.95277 0.94799 1.21886 0.97076 1.00804 0.99301 1.20686 0.93946 0.92857 0.87972 1.42760 1.58608 1.11890 1.26819 1.19038 1.19613 0.97618 1.01062 0.89203 1.24649 0.99464 0.97596 0.97272 1.69699 1.37346 1.36280 1.14885 0.86622 0.78417 0.86715 0.77210 1.20957 1.21671 1.20330 0.92450 0.93024 0.91851 0.90412 0.90743 0.88119 0.87988 0.84362 0.81896 0.82060 0.90185 0.90271 0.93153 0.92217 0.92041 0.95283 0.95127 0.80502 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 7.92 37.16 0.29 -1.00 16 2 C -0.10 -1.01 3.30 -89.22 -0.29 -1.30 16 3 H 0.09 0.89 7.72 -51.93 -0.40 0.49 16 4 C 0.10 0.95 6.46 -2.41 -0.02 0.94 16 5 N -0.62 -7.87 3.32 -169.31 -0.56 -8.43 16 6 C 0.53 7.20 7.91 -10.99 -0.09 7.11 16 7 O -0.53 -9.67 16.30 5.55 0.09 -9.58 16 8 C -0.08 -0.71 4.93 -29.04 -0.14 -0.85 16 9 C -0.08 -0.88 4.29 -106.25 -0.46 -1.34 16 10 C -0.12 -1.23 9.98 -41.21 -0.41 -1.64 16 11 C -0.21 -2.00 11.23 29.04 0.33 -1.68 16 12 S 0.09 0.87 23.34 -107.50 -2.51 -1.64 16 13 C -0.20 -2.03 10.98 29.04 0.32 -1.71 16 14 C 0.12 1.80 5.71 -2.41 -0.01 1.78 16 15 C -0.08 -1.14 0.73 -153.11 -0.11 -1.25 16 16 C -0.13 -1.97 7.09 37.16 0.26 -1.70 16 17 C 0.17 3.13 4.87 -4.04 -0.02 3.11 16 18 N -0.75 -17.51 4.93 -59.91 -0.30 -17.81 16 19 C -0.24 -6.83 10.47 -15.05 -0.16 -6.99 16 20 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 21 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 22 N -0.93 -29.48 13.97 55.49 0.78 -28.70 16 23 Si 0.88 22.56 27.74 -169.99 -4.71 17.85 16 24 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 26 H -0.28 -6.71 6.52 56.52 0.37 -6.34 16 27 H 0.06 0.56 6.61 -51.93 -0.34 0.22 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.61 6.98 -51.93 -0.36 0.24 16 30 H 0.08 0.52 7.02 -51.93 -0.36 0.15 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.10 0.71 7.93 -51.93 -0.41 0.30 16 33 H 0.10 0.72 8.13 -51.93 -0.42 0.30 16 34 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.16 1.40 8.06 -52.48 -0.42 0.98 16 37 H 0.08 1.43 7.60 -51.93 -0.39 1.04 16 38 H 0.08 1.30 7.83 -51.93 -0.41 0.89 16 39 H 0.05 0.68 6.72 -51.93 -0.35 0.33 16 40 H 0.06 1.04 6.74 -51.93 -0.35 0.69 16 41 H 0.06 0.85 6.88 -51.93 -0.36 0.49 16 42 H 0.03 0.53 8.10 -51.93 -0.42 0.11 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.36 8.38 4.04 -40.82 -0.16 8.22 16 45 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 368.98 15.07 5.56 5.56 Total: -1.00 -34.41 368.98 -9.14 -43.55 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -6.88 Total: 5.66 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -0.60 Total: -6.44 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: -0.08 Total: -54.95 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.71 Total: 17.85 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.51 Total: -1.64 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.41 -9.14 -43.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180488969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.427 kcal (2) G-P(sol) polarization free energy of solvation -34.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds