Wall clock time and date at job start Tue Mar 31 2020 14:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47488 * 2 1 4 4 O 1.42898 * 109.46968 * 239.99665 * 2 1 3 5 5 C 1.35646 * 117.00088 * 210.00247 * 4 2 1 6 6 C 1.39038 * 119.54338 * 179.72948 * 5 4 2 7 7 C 1.38115 * 119.24521 * 179.75055 * 6 5 4 8 8 C 1.40016 * 118.37210 * 0.51197 * 7 6 5 9 9 C 1.48175 * 120.48046 * 179.77285 * 8 7 6 10 10 C 1.39177 * 120.28404 * 303.42066 * 9 8 7 11 11 C 1.38328 * 120.10302 * 180.02562 * 10 9 8 12 12 C 1.38045 * 120.77170 * 0.02562 * 11 10 9 13 13 C 1.39124 * 120.23765 * 359.97438 * 12 11 10 14 14 N 1.38182 * 132.73756 * 179.97438 * 13 12 11 15 15 H 0.97007 * 124.69979 * 359.97271 * 14 13 12 16 16 C 1.35597 * 110.59410 * 179.97438 * 14 13 12 17 17 C 1.38984 * 109.24747 * 359.97438 * 16 14 13 18 18 C 1.40960 * 126.93246 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00518 * 155.49529 * 18 17 16 20 20 C 1.39687 * 119.99716 * 335.48547 * 18 17 16 21 21 N 1.31080 * 119.99966 * 169.98279 * 20 18 17 22 22 Si 1.86804 * 119.99938 * 349.99487 * 20 18 17 23 23 H 1.48497 * 109.47143 * 86.40415 * 22 20 18 24 24 H 1.48496 * 109.46963 * 206.40820 * 22 20 18 25 25 H 1.48499 * 109.46729 * 326.40514 * 22 20 18 26 26 C 1.40206 * 120.28227 * 123.14719 * 9 8 7 27 27 C 1.39284 * 119.03282 * 359.75196 * 8 7 6 28 28 N 1.31796 * 120.64701 * 359.97438 * 27 8 7 29 29 H 1.09003 * 109.46812 * 59.99720 * 1 2 3 30 30 H 1.08997 * 109.47884 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47415 * 300.00151 * 1 2 3 32 32 H 1.09003 * 109.46812 * 120.00280 * 2 1 3 33 33 H 1.09003 * 109.47322 * 299.99967 * 3 2 1 34 34 H 1.09008 * 109.47236 * 59.99545 * 3 2 1 35 35 H 1.08997 * 109.47470 * 179.97438 * 3 2 1 36 36 H 1.07999 * 120.37588 * 0.02562 * 6 5 4 37 37 H 1.08003 * 120.81505 * 180.26757 * 7 6 5 38 38 H 1.08005 * 119.94963 * 359.97438 * 10 9 8 39 39 H 1.08000 * 119.60938 * 179.97438 * 11 10 9 40 40 H 1.07994 * 119.87360 * 179.97438 * 12 11 10 41 41 H 1.07998 * 125.37476 * 179.97438 * 16 14 13 42 42 H 0.97001 * 119.99920 * 179.97438 * 21 20 18 43 43 H 1.07991 * 119.67151 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 3.1984 -1.3130 -1.0652 6 6 3.7090 -1.9904 -2.1668 7 6 4.9258 -2.6348 -2.0582 8 6 5.5959 -2.5883 -0.8297 9 6 6.9018 -3.2676 -0.6597 10 6 7.0234 -4.6296 -0.9190 11 6 8.2441 -5.2601 -0.7585 12 6 9.3543 -4.5539 -0.3410 13 6 9.2589 -3.1916 -0.0753 14 7 10.1798 -2.2517 0.3466 15 1 11.1133 -2.4382 0.5332 16 6 9.5977 -1.0326 0.4636 17 6 8.2553 -1.1308 0.1172 18 6 7.3050 -0.0897 0.1066 19 1 6.4335 -0.1604 -0.5273 20 6 7.4905 1.0333 0.9163 21 7 6.7206 2.0836 0.7665 22 14 8.8358 1.0386 2.2122 23 1 10.1127 1.4836 1.5984 24 1 8.4633 1.9682 3.3087 25 1 9.0010 -0.3318 2.7598 26 6 8.0267 -2.5427 -0.2418 27 6 5.0174 -1.8939 0.2301 28 7 3.8565 -1.2878 0.0821 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3635 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4424 0.0005 36 1 3.1625 -2.0087 -3.0982 37 1 5.3481 -3.1649 -2.8990 38 1 6.1631 -5.1954 -1.2452 39 1 8.3294 -6.3174 -0.9616 40 1 10.3002 -5.0608 -0.2201 41 1 10.0982 -0.1283 0.7766 42 1 6.8491 2.8633 1.3290 43 1 5.5251 -1.8518 1.1822 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240810595.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:18 Heat of formation + Delta-G solvation = 46.623991 kcal Electronic energy + Delta-G solvation = -26869.132733 eV Core-core repulsion = 23265.661738 eV Total energy + Delta-G solvation = -3603.470995 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.33301 -39.77744 -37.81858 -35.97853 -33.62838 -32.94884 -32.27875 -31.32471 -29.66842 -28.41921 -27.78796 -26.99155 -24.59703 -23.52803 -23.09849 -21.31970 -21.08544 -20.44882 -19.43191 -18.02204 -17.30677 -16.41535 -16.21321 -15.58294 -15.23506 -14.85230 -14.37905 -14.19648 -14.14623 -14.06886 -13.51244 -13.37133 -13.17435 -13.06881 -12.81702 -12.50190 -12.12029 -12.09210 -11.95969 -11.68071 -11.56435 -11.44230 -11.05894 -10.86253 -10.74738 -10.63085 -10.51998 -10.23905 -10.08994 -9.64255 -9.37002 -9.17857 -8.97681 -8.54597 -7.77053 -7.31942 -6.75806 -6.65021 -4.12297 1.50394 1.85195 2.14289 2.43037 3.05124 3.21225 3.30945 3.45451 3.76683 4.07649 4.23209 4.37005 4.63613 4.90341 5.12587 5.23100 5.25674 5.32473 5.45936 5.51908 5.56020 5.58573 5.72733 5.75546 5.76687 5.90080 5.94995 6.02999 6.07041 6.15250 6.25526 6.33293 6.42596 6.47203 6.54726 6.66190 6.67309 6.80862 6.92750 7.02511 7.12894 7.23658 7.42321 7.58647 7.76474 7.79573 8.16352 8.41574 8.52223 8.64660 8.81984 9.01315 10.36578 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.011341 B = 0.005466 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.292092 B = 5121.578466 C = 7239.114972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.083 3.917 3 C -0.169 4.169 4 O -0.308 6.308 5 C 0.316 3.684 6 C -0.205 4.205 7 C -0.034 4.034 8 C -0.122 4.122 9 C 0.024 3.976 10 C -0.174 4.174 11 C -0.102 4.102 12 C -0.157 4.157 13 C 0.106 3.894 14 N -0.584 5.584 15 H 0.397 0.603 16 C -0.171 4.171 17 C 0.038 3.962 18 C -0.422 4.422 19 H 0.092 0.908 20 C 0.082 3.918 21 N -0.827 5.827 22 Si 0.906 3.094 23 H -0.277 1.277 24 H -0.297 1.297 25 H -0.248 1.248 26 C -0.114 4.114 27 C 0.199 3.801 28 N -0.534 5.534 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.104 0.896 41 H 0.144 0.856 42 H 0.279 0.721 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.430 -7.320 -1.270 8.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.027 3.973 3 C -0.227 4.227 4 O -0.217 6.217 5 C 0.138 3.862 6 C -0.225 4.225 7 C -0.059 4.059 8 C -0.124 4.124 9 C 0.023 3.977 10 C -0.194 4.194 11 C -0.121 4.121 12 C -0.178 4.178 13 C -0.005 4.005 14 N -0.186 5.186 15 H 0.231 0.769 16 C -0.293 4.293 17 C 0.032 3.968 18 C -0.453 4.453 19 H 0.110 0.890 20 C -0.133 4.133 21 N -0.454 5.454 22 Si 0.736 3.264 23 H -0.204 1.204 24 H -0.225 1.225 25 H -0.172 1.172 26 C -0.121 4.121 27 C 0.042 3.958 28 N -0.256 5.256 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.122 0.878 41 H 0.161 0.839 42 H 0.089 0.911 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.021 -6.456 -0.685 8.207 hybrid contribution 1.699 -0.044 0.191 1.711 sum -3.321 -6.500 -0.494 7.316 Atomic orbital electron populations 1.21894 0.93666 1.02416 1.02546 1.22244 0.93561 0.93149 0.88363 1.22205 1.03701 0.95137 1.01609 1.86209 1.32292 1.64668 1.38506 1.19783 0.85949 0.90222 0.90214 1.20766 0.98441 1.04693 0.98613 1.21332 0.92392 0.95526 0.96636 1.19532 0.95692 1.02434 0.94787 1.17851 0.90125 0.92026 0.97716 1.20625 0.97375 0.93397 1.08027 1.20393 0.92318 0.98363 1.01061 1.19851 0.98705 0.90989 1.08298 1.18119 0.90149 0.90440 1.01806 1.40930 1.09625 1.07328 1.60708 0.76920 1.21681 0.94114 0.87778 1.25727 1.18238 0.91300 0.90043 0.97251 1.18661 1.06750 0.98360 1.21550 0.89039 1.25860 0.95795 0.94176 0.97443 1.69739 1.36256 1.03596 1.35821 0.86463 0.80375 0.79092 0.80491 1.20407 1.22510 1.17222 1.19255 0.91628 0.94436 1.06787 1.22471 0.87598 0.86921 0.98774 1.67214 1.11132 1.22896 1.24394 0.91979 0.92221 0.90869 0.89360 0.92630 0.91716 0.90567 0.84997 0.84779 0.87148 0.87038 0.87779 0.83910 0.91128 0.82312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.56 37.16 0.36 -1.37 16 2 C 0.08 1.29 3.11 -26.73 -0.08 1.20 16 3 C -0.17 -2.70 9.53 37.15 0.35 -2.34 16 4 O -0.31 -5.42 9.76 -18.64 -0.18 -5.60 16 5 C 0.32 6.01 7.46 -17.06 -0.13 5.88 16 6 C -0.20 -3.50 10.03 -39.33 -0.39 -3.90 16 7 C -0.03 -0.58 9.78 -38.96 -0.38 -0.96 16 8 C -0.12 -2.39 4.61 -104.76 -0.48 -2.88 16 9 C 0.02 0.48 5.43 -104.73 -0.57 -0.09 16 10 C -0.17 -2.96 9.64 -39.20 -0.38 -3.34 16 11 C -0.10 -1.62 10.00 -39.62 -0.40 -2.02 16 12 C -0.16 -2.66 10.06 -39.32 -0.40 -3.06 16 13 C 0.11 2.15 7.23 -83.91 -0.61 1.54 16 14 N -0.58 -11.50 5.99 -9.81 -0.06 -11.55 16 15 H 0.40 6.24 8.96 -40.82 -0.37 5.87 16 16 C -0.17 -3.91 9.22 -15.61 -0.14 -4.05 16 17 C 0.04 0.93 5.57 -104.83 -0.58 0.35 16 18 C -0.42 -11.13 8.01 -38.01 -0.30 -11.43 16 19 H 0.09 2.59 5.99 -52.49 -0.31 2.28 16 20 C 0.08 2.15 5.51 -17.33 -0.10 2.05 16 21 N -0.83 -22.34 13.94 55.54 0.77 -21.57 16 22 Si 0.91 20.65 24.56 -169.99 -4.17 16.47 16 23 H -0.28 -6.11 6.58 56.52 0.37 -5.74 16 24 H -0.30 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.25 -5.71 6.63 56.52 0.37 -5.33 16 26 C -0.11 -2.55 6.08 -104.64 -0.64 -3.19 16 27 C 0.20 4.13 7.95 -17.18 -0.14 4.00 16 28 N -0.53 -10.92 8.62 -13.02 -0.11 -11.03 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.09 1.46 6.97 -51.93 -0.36 1.10 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.90 8.14 -51.92 -0.42 0.47 16 35 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.13 1.91 8.06 -52.49 -0.42 1.48 16 37 H 0.13 1.97 8.06 -52.48 -0.42 1.55 16 38 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 39 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.10 1.48 8.06 -52.49 -0.42 1.06 16 41 H 0.14 3.22 4.31 -52.49 -0.23 2.99 16 42 H 0.28 6.97 8.30 -40.82 -0.34 6.64 16 43 H 0.16 3.43 7.82 -52.49 -0.41 3.02 16 LS Contribution 353.45 15.07 5.33 5.33 Total: -1.00 -29.02 353.45 -8.95 -37.97 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -5.52 Total: 13.59 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -5.01 Total: -23.60 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.60 Total: -44.16 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -0.18 Total: -5.60 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.17 Total: 16.47 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.02 -8.95 -37.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240810595.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.597 kcal (2) G-P(sol) polarization free energy of solvation -29.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds