Wall clock time and date at job start Tue Mar 31 2020 13:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47324 * 2 1 4 4 C 1.53010 * 109.46693 * 240.00250 * 2 1 3 5 5 O 1.42893 * 109.47311 * 120.00476 * 2 1 3 6 6 C 1.35595 * 117.00176 * 59.99833 * 5 2 1 7 7 N 1.32170 * 119.77654 * 0.28992 * 6 5 2 8 8 C 1.31946 * 121.77966 * 180.29133 * 7 6 5 9 9 C 1.38210 * 121.11426 * 359.68261 * 8 7 6 10 10 C 1.38520 * 119.42073 * 0.02562 * 9 8 7 11 11 C 1.39620 * 118.36750 * 0.02562 * 10 9 8 12 12 C 1.48225 * 120.56773 * 179.97438 * 11 10 9 13 13 C 1.39855 * 119.53978 * 129.99979 * 12 11 10 14 14 C 1.37696 * 121.16797 * 179.97438 * 13 12 11 15 15 C 1.39597 * 120.18733 * 0.27825 * 14 13 12 16 16 C 1.43197 * 120.45240 * 179.69943 * 15 14 13 17 17 N 8.44113 * 122.91608 * 87.26747 * 2 1 3 18 18 C 1.46552 * 119.09514 * 359.46553 * 15 14 13 19 19 C 1.40839 * 120.55183 * 180.24183 * 18 15 14 20 20 H 1.08004 * 120.00384 * 336.16283 * 19 18 15 21 21 C 1.40234 * 119.99919 * 156.16245 * 19 18 15 22 22 N 1.30655 * 120.00103 * 341.80305 * 21 19 18 23 23 Si 1.86801 * 119.99820 * 161.80692 * 21 19 18 24 24 H 1.48497 * 109.47320 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47077 * 120.00011 * 23 21 19 26 26 H 1.48505 * 109.47168 * 239.99557 * 23 21 19 27 27 C 1.38650 * 119.53868 * 309.98061 * 12 11 10 28 28 H 1.09001 * 109.46610 * 299.99431 * 1 2 3 29 29 H 1.08996 * 109.47303 * 59.99811 * 1 2 3 30 30 H 1.09004 * 109.46906 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47478 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47309 * 300.00779 * 3 2 1 33 33 H 1.09002 * 109.47105 * 59.99969 * 3 2 1 34 34 H 1.08999 * 109.47120 * 299.99999 * 4 2 1 35 35 H 1.09000 * 109.46811 * 59.99912 * 4 2 1 36 36 H 1.08999 * 109.46747 * 179.97438 * 4 2 1 37 37 H 1.08004 * 119.44202 * 179.69999 * 8 7 6 38 38 H 1.08007 * 120.28916 * 180.02562 * 9 8 7 39 39 H 1.07991 * 120.81873 * 179.97438 * 10 9 8 40 40 H 1.08005 * 119.41635 * 359.95850 * 13 12 11 41 41 H 1.07998 * 119.90513 * 179.97438 * 14 13 12 42 42 H 0.97000 * 120.00554 * 185.02864 * 22 21 19 43 43 H 1.07999 * 120.13496 * 0.03772 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2494 5 8 2.0064 -0.6737 1.1666 6 6 1.6421 -1.9707 1.3205 7 7 0.8842 -2.5523 0.4071 8 6 0.5018 -3.8101 0.5198 9 6 0.8860 -4.5792 1.6021 10 6 1.6855 -4.0194 2.5850 11 6 2.0757 -2.6863 2.4433 12 6 2.9305 -2.0382 3.4662 13 6 4.0770 -1.3437 3.0674 14 6 4.8945 -0.7288 3.9891 15 6 4.5917 -0.7947 5.3502 16 6 5.4414 -0.1628 6.3142 17 7 6.1170 0.3378 7.0780 18 6 3.3895 -1.5150 5.7788 19 6 3.0520 -1.5963 7.1437 20 1 3.8182 -1.4866 7.8969 21 6 1.7211 -1.8198 7.5248 22 7 0.7529 -1.6024 6.6749 23 14 1.3325 -2.4282 9.2477 24 1 2.5956 -2.5945 10.0106 25 1 0.4646 -1.4402 9.9375 26 1 0.6281 -3.7329 9.1648 27 6 2.5820 -2.1287 4.8052 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2494 35 1 1.6766 -0.2073 -2.1393 36 1 3.1300 -0.7209 -1.2496 37 1 -0.1216 -4.2462 -0.2467 38 1 0.5656 -5.6076 1.6807 39 1 1.9985 -4.5994 3.4404 40 1 4.3257 -1.2889 2.0178 41 1 5.7752 -0.1983 3.6585 42 1 -0.1706 -1.6864 6.9596 43 1 1.6940 -2.6685 5.0990 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241144402.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:09 Heat of formation + Delta-G solvation = 39.258308 kcal Electronic energy + Delta-G solvation = -26728.394637 eV Core-core repulsion = 23124.604242 eV Total energy + Delta-G solvation = -3603.790395 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.62158 -38.26837 -37.54883 -35.16287 -34.27547 -33.74956 -32.55151 -30.75042 -29.90937 -28.41252 -27.19428 -27.17577 -25.76318 -23.88053 -23.21415 -21.11643 -20.94662 -20.21663 -17.78123 -17.30881 -17.05605 -16.43081 -15.82767 -15.28174 -15.11553 -14.57209 -14.39697 -14.13212 -13.75601 -13.65298 -13.27202 -12.94670 -12.72809 -12.63382 -12.53616 -12.29711 -12.21733 -11.85802 -11.79920 -11.77030 -11.70449 -11.56882 -11.45123 -11.29186 -11.21366 -10.80806 -10.60549 -10.58411 -10.44786 -10.06339 -9.82012 -9.57661 -9.32659 -9.07128 -8.22943 -7.72293 -7.27443 -7.08825 -4.68769 1.30153 1.61149 2.23714 2.67207 2.92562 2.99126 3.07217 3.35483 3.70046 3.95002 3.99017 4.24724 4.47032 4.49849 5.00224 5.00765 5.14128 5.18483 5.29522 5.33257 5.43102 5.48668 5.53092 5.62831 5.69637 5.85883 5.88075 5.94399 6.02425 6.05787 6.07257 6.19528 6.31151 6.43503 6.47415 6.51455 6.54549 6.72662 6.78930 6.90392 7.01794 7.19823 7.52305 7.70698 7.71918 7.80506 7.89439 8.14111 8.23373 8.45717 8.57254 8.86113 9.77462 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012160 B = 0.004466 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.999790 B = 6267.435387 C = 7375.215021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.117 3.883 3 C -0.140 4.140 4 C -0.180 4.180 5 O -0.278 6.278 6 C 0.333 3.667 7 N -0.534 5.534 8 C 0.113 3.887 9 C -0.212 4.212 10 C -0.039 4.039 11 C -0.086 4.086 12 C -0.008 4.008 13 C -0.215 4.215 14 C -0.031 4.031 15 C -0.186 4.186 16 C 0.301 3.699 17 N -0.513 5.513 18 C 0.149 3.851 19 C -0.432 4.432 20 H 0.087 0.913 21 C 0.077 3.923 22 N -0.764 5.764 23 Si 0.913 3.087 24 H -0.256 1.256 25 H -0.270 1.270 26 H -0.266 1.266 27 C -0.143 4.143 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.151 0.849 38 H 0.130 0.870 39 H 0.140 0.860 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.289 0.711 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.607 -4.168 -13.151 14.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.079 3.921 3 C -0.197 4.197 4 C -0.238 4.238 5 O -0.184 6.184 6 C 0.155 3.845 7 N -0.258 5.258 8 C -0.042 4.042 9 C -0.232 4.232 10 C -0.064 4.064 11 C -0.089 4.089 12 C -0.010 4.010 13 C -0.234 4.234 14 C -0.051 4.051 15 C -0.192 4.192 16 C -0.008 4.008 17 N -0.192 5.192 18 C 0.144 3.856 19 C -0.460 4.460 20 H 0.105 0.895 21 C -0.146 4.146 22 N -0.386 5.386 23 Si 0.736 3.264 24 H -0.179 1.179 25 H -0.195 1.195 26 H -0.191 1.191 27 C -0.162 4.162 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.168 0.832 38 H 0.148 0.852 39 H 0.157 0.843 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.101 0.899 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.920 -2.761 -12.573 13.781 hybrid contribution -0.549 -0.819 0.926 1.352 sum -5.469 -3.579 -11.647 13.356 Atomic orbital electron populations 1.22549 0.94774 1.04826 1.01668 1.21634 0.94229 0.92034 0.84153 1.21812 1.02141 0.93189 1.02583 1.22560 1.01066 1.03617 0.96524 1.86475 1.69146 1.19364 1.43459 1.19834 0.90243 0.84861 0.89593 1.67420 1.16026 1.13069 1.29302 1.22309 0.96622 0.88630 0.96654 1.21806 1.03018 1.01591 0.96807 1.21568 0.93827 0.93110 0.97893 1.19132 1.01384 0.93642 0.94747 1.18212 0.93537 0.97584 0.91686 1.20020 0.98029 1.08053 0.97323 1.20344 0.97220 0.96467 0.91111 1.16969 1.00948 1.12292 0.89002 1.25824 0.91418 0.91477 0.92124 1.81012 1.13329 1.14370 1.10503 1.18305 0.87900 0.86431 0.92991 1.19785 0.93861 1.39458 0.92858 0.89533 1.26101 0.95963 0.92233 1.00304 1.69710 1.01483 1.31064 1.36364 0.86149 0.79908 0.79391 0.80955 1.17905 1.19459 1.19121 1.21326 1.01594 1.03322 0.89959 0.92562 0.92179 0.89125 0.91643 0.90993 0.91508 0.89030 0.92164 0.92765 0.83186 0.85185 0.84267 0.88506 0.88344 0.89939 0.85429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 8.35 37.16 0.31 -2.07 16 2 C 0.12 1.63 1.11 -90.61 -0.10 1.53 16 3 C -0.14 -1.70 8.84 37.16 0.33 -1.37 16 4 C -0.18 -2.24 8.35 37.16 0.31 -1.93 16 5 O -0.28 -4.87 8.11 -18.48 -0.15 -5.02 16 6 C 0.33 5.78 6.67 -16.73 -0.11 5.66 16 7 N -0.53 -7.95 4.58 -13.04 -0.06 -8.01 16 8 C 0.11 1.42 11.17 -17.51 -0.20 1.22 16 9 C -0.21 -2.68 10.09 -39.49 -0.40 -3.08 16 10 C -0.04 -0.60 9.63 -38.96 -0.38 -0.98 16 11 C -0.09 -1.58 5.46 -104.61 -0.57 -2.15 16 12 C -0.01 -0.18 5.29 -105.04 -0.56 -0.73 16 13 C -0.21 -4.38 8.71 -39.17 -0.34 -4.72 16 14 C -0.03 -0.64 9.74 -39.27 -0.38 -1.02 16 15 C -0.19 -4.33 5.95 -104.12 -0.62 -4.95 16 16 C 0.30 7.19 14.27 -22.47 -0.32 6.87 16 17 N -0.51 -12.56 18.54 41.84 0.78 -11.78 16 18 C 0.15 3.62 5.74 -104.68 -0.60 3.02 16 19 C -0.43 -10.60 8.58 -37.85 -0.32 -10.92 16 20 H 0.09 2.16 7.36 -52.48 -0.39 1.78 16 21 C 0.08 1.74 5.14 -17.30 -0.09 1.66 16 22 N -0.76 -17.63 10.96 55.56 0.61 -17.02 16 23 Si 0.91 17.24 29.60 -169.99 -5.03 12.21 16 24 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 25 H -0.27 -5.05 7.11 56.52 0.40 -4.64 16 26 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 27 C -0.14 -3.26 8.15 -38.54 -0.31 -3.57 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 1.28 5.59 -51.93 -0.29 0.99 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 1.22 5.57 -51.93 -0.29 0.93 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.15 1.36 8.06 -52.48 -0.42 0.94 16 38 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 39 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16 40 H 0.10 1.85 7.64 -52.48 -0.40 1.45 16 41 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 42 H 0.29 6.01 8.30 -40.82 -0.34 5.67 16 43 H 0.13 2.96 6.13 -52.49 -0.32 2.64 16 LS Contribution 364.18 15.07 5.49 5.49 Total: -1.00 -26.72 364.18 -8.19 -34.92 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -5.47 Total: 6.74 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -4.35 Total: -17.54 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 1.32 Total: -36.81 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -0.15 Total: -5.02 kcal Atomic # 14 Polarization: 17.24 SS G_CDS: -5.03 Total: 12.21 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -26.72 -8.19 -34.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241144402.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.177 kcal (2) G-P(sol) polarization free energy of solvation -26.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds