Wall clock time and date at job start Tue Mar 31 2020 13:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47326 * 2 1 4 4 H 1.09004 * 109.47038 * 54.99778 * 3 2 1 5 5 N 1.46506 * 109.47161 * 295.00435 * 3 2 1 6 6 C 1.34774 * 120.00584 * 84.99802 * 5 3 2 7 7 O 1.21347 * 119.99568 * 0.02562 * 6 5 3 8 8 C 1.49438 * 120.00177 * 180.02562 * 6 5 3 9 9 O 1.21347 * 120.00255 * 359.97438 * 8 6 5 10 10 N 1.34783 * 119.99934 * 179.97438 * 8 6 5 11 11 C 1.46507 * 119.99953 * 179.97438 * 10 8 6 12 12 C 1.52998 * 109.46823 * 179.97438 * 11 10 8 13 13 C 1.50699 * 109.46879 * 180.02562 * 12 11 10 14 14 H 1.08007 * 120.00157 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00224 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99879 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00224 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47118 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47240 * 119.99971 * 17 15 13 20 20 H 1.48503 * 109.46642 * 239.99721 * 17 15 13 21 21 C 1.50698 * 109.47307 * 175.00079 * 3 2 1 22 22 C 1.38244 * 119.97167 * 259.99931 * 21 3 2 23 23 C 1.38205 * 120.02298 * 180.02562 * 22 21 3 24 24 C 1.38459 * 119.97412 * 0.24026 * 23 22 21 25 25 F 1.35099 * 120.02759 * 179.72396 * 24 23 22 26 26 C 1.38466 * 119.94836 * 359.48301 * 24 23 22 27 27 C 1.38196 * 119.97140 * 0.53984 * 26 24 23 28 28 H 1.09003 * 109.47319 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46820 * 300.00225 * 1 2 3 30 30 H 1.09002 * 109.47245 * 59.99617 * 1 2 3 31 31 H 1.08998 * 109.46881 * 240.00302 * 2 1 3 32 32 H 1.09002 * 109.46743 * 120.00218 * 2 1 3 33 33 H 0.97006 * 119.99459 * 265.00091 * 5 3 2 34 34 H 0.96997 * 119.99953 * 0.02562 * 10 8 6 35 35 H 1.08998 * 109.46937 * 299.99976 * 11 10 8 36 36 H 1.08995 * 109.46807 * 60.00133 * 11 10 8 37 37 H 1.08998 * 109.47443 * 299.99787 * 12 11 10 38 38 H 1.09003 * 109.46931 * 60.00317 * 12 11 10 39 39 H 0.96999 * 119.99794 * 180.02562 * 16 15 13 40 40 H 1.07999 * 119.98898 * 0.02589 * 22 21 3 41 41 H 1.08002 * 120.00949 * 179.97438 * 23 22 21 42 42 H 1.07997 * 120.00962 * 180.25357 * 26 24 23 43 43 H 1.08000 * 119.98525 * 179.74601 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6524 2.0975 -1.2518 6 6 0.4352 2.6644 -1.3670 7 8 -0.3396 2.6327 -0.4336 8 6 0.0396 3.3321 -2.6441 9 8 0.8146 3.3642 -3.5773 10 7 -1.1779 3.8986 -2.7594 11 6 -1.5655 4.5537 -4.0113 12 6 -2.9849 5.1088 -3.8781 13 6 -3.3838 5.7821 -5.1660 14 1 -2.6937 5.8114 -5.9963 15 6 -4.6293 6.3615 -5.2840 16 7 -5.4695 6.3262 -4.2728 17 14 -5.1240 7.1954 -6.8807 18 1 -4.0086 7.0984 -7.8561 19 1 -6.3277 6.5264 -7.4363 20 1 -5.4289 8.6250 -6.6186 21 6 3.5419 1.4442 0.1238 22 6 4.1336 1.6872 1.3494 23 6 5.5109 1.6896 1.4640 24 6 6.2982 1.4535 0.3498 25 9 7.6447 1.4611 0.4595 26 6 5.7043 1.2046 -0.8760 27 6 4.3270 1.2032 -0.9883 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.2720 2.1231 -1.9978 34 1 -1.7972 3.8733 -2.0133 35 1 -0.8743 5.3693 -4.2236 36 1 -1.5339 3.8294 -4.8252 37 1 -3.6758 4.2929 -3.6660 38 1 -3.0169 5.8330 -3.0640 39 1 -6.3459 6.7335 -4.3559 40 1 3.5193 1.8752 2.2176 41 1 5.9729 1.8799 2.4215 42 1 6.3175 1.0163 -1.7449 43 1 3.8636 1.0131 -1.9452 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326720674.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:37 Heat of formation + Delta-G solvation = -105.897749 kcal Electronic energy + Delta-G solvation = -26008.707665 eV Core-core repulsion = 21967.853607 eV Total energy + Delta-G solvation = -4040.854059 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.28863 -40.88720 -39.66389 -38.35910 -36.14970 -35.05688 -32.93282 -32.52682 -31.59514 -31.04126 -29.83153 -26.78463 -25.42818 -23.83030 -23.40612 -22.58913 -21.17357 -20.83038 -20.23655 -18.59220 -17.97124 -17.21636 -16.61840 -16.25807 -16.17676 -16.01948 -15.91939 -15.38196 -14.90747 -14.77096 -14.53019 -14.38764 -14.01686 -13.71718 -13.68752 -13.46876 -13.19747 -13.01903 -12.82596 -12.35382 -12.34158 -11.82892 -11.54512 -11.45847 -11.40320 -11.24352 -11.09248 -11.05452 -10.66501 -10.42746 -9.81756 -9.59086 -9.50200 -9.40296 -9.21176 -9.00571 -8.72307 -8.43838 -6.11915 -4.15513 0.61061 0.75157 1.57410 2.46630 3.09568 3.26790 3.34539 3.38964 3.39322 3.79524 3.84993 4.06270 4.23816 4.38805 4.42446 4.69059 4.71982 4.74425 4.82540 4.92448 5.12643 5.25106 5.32320 5.42286 5.48634 5.57543 5.65450 5.73698 5.77807 5.88769 5.90527 6.14623 6.17339 6.21603 6.26486 6.39128 6.56905 6.66953 6.99508 7.44326 7.55808 7.62858 7.85492 7.89062 8.18891 8.31408 8.90336 9.49559 10.99565 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023703 B = 0.002097 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.986391 B =13351.396066 C =14059.934929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C 0.186 3.814 4 H 0.104 0.896 5 N -0.701 5.701 6 C 0.510 3.490 7 O -0.512 6.512 8 C 0.496 3.504 9 O -0.534 6.534 10 N -0.685 5.685 11 C 0.119 3.881 12 C 0.011 3.989 13 C -0.523 4.523 14 H 0.061 0.939 15 C 0.059 3.941 16 N -0.892 5.892 17 Si 0.898 3.102 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.103 4.103 22 C -0.076 4.076 23 C -0.150 4.150 24 C 0.099 3.901 25 F -0.140 7.140 26 C -0.148 4.148 27 C -0.082 4.082 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.411 0.589 34 H 0.411 0.589 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.262 0.738 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.740 -13.502 12.629 27.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C 0.081 3.919 4 H 0.122 0.878 5 N -0.356 5.356 6 C 0.292 3.708 7 O -0.387 6.387 8 C 0.275 3.725 9 O -0.412 6.412 10 N -0.336 5.336 11 C -0.003 4.003 12 C -0.027 4.027 13 C -0.561 4.561 14 H 0.079 0.921 15 C -0.143 4.143 16 N -0.530 5.530 17 Si 0.725 3.275 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.104 4.104 22 C -0.094 4.094 23 C -0.169 4.169 24 C 0.079 3.921 25 F -0.118 7.118 26 C -0.167 4.167 27 C -0.101 4.101 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.248 0.752 34 H 0.246 0.754 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.155 0.845 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 20.568 -13.422 12.674 27.637 hybrid contribution -0.047 0.490 -0.812 0.950 sum 20.521 -12.931 11.861 27.000 Atomic orbital electron populations 1.21845 0.94213 1.01172 1.03350 1.21975 0.97360 0.94579 1.02802 1.19970 0.89497 0.94435 0.87961 0.87837 1.45886 1.16510 1.56492 1.16756 1.20399 0.82385 0.79170 0.88877 1.90767 1.50696 1.57356 1.39862 1.19979 0.83706 0.80997 0.87769 1.90731 1.51288 1.59172 1.39993 1.46235 1.14723 1.53782 1.18864 1.21938 0.99662 0.95871 0.82825 1.19360 0.88330 0.96560 0.98429 1.21048 1.00152 1.36171 0.98755 0.92116 1.25010 0.96453 0.96092 0.96779 1.69971 1.07703 1.44707 1.30667 0.86442 0.78556 0.79139 0.83336 1.19584 1.20917 1.20920 1.19972 0.94969 1.01332 0.94093 1.20882 0.93781 0.97428 0.97345 1.21156 0.94052 1.03357 0.98348 1.17777 0.77034 1.02304 0.94959 1.91513 1.29497 1.93985 1.96839 1.21160 0.95667 1.03031 0.96801 1.20861 0.92609 0.97801 0.98783 0.93075 0.91789 0.92380 0.91412 0.90653 0.75170 0.75370 0.91865 0.91856 0.95651 0.95660 0.92821 0.84503 0.84437 0.84375 0.84766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.52 37.16 0.32 -1.17 16 2 C -0.13 -1.02 5.59 -26.73 -0.15 -1.17 16 3 C 0.19 1.58 2.46 -69.08 -0.17 1.41 16 4 H 0.10 0.95 7.44 -51.93 -0.39 0.56 16 5 N -0.70 -7.38 4.97 -55.37 -0.28 -7.65 16 6 C 0.51 7.00 6.46 -11.59 -0.07 6.93 16 7 O -0.51 -7.66 13.62 5.50 0.07 -7.58 16 8 C 0.50 8.16 7.89 -11.59 -0.09 8.07 16 9 O -0.53 -9.74 16.48 5.50 0.09 -9.65 16 10 N -0.69 -12.05 5.55 -60.73 -0.34 -12.39 16 11 C 0.12 2.43 5.61 -4.04 -0.02 2.41 16 12 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 13 C -0.52 -14.22 9.11 -34.44 -0.31 -14.54 16 14 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 17 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C -0.10 -0.77 4.96 -104.62 -0.52 -1.28 16 22 C -0.08 -0.50 9.67 -39.59 -0.38 -0.89 16 23 C -0.15 -1.04 10.03 -39.51 -0.40 -1.44 16 24 C 0.10 0.80 7.30 -39.42 -0.29 0.51 16 25 F -0.14 -1.27 17.27 2.25 0.04 -1.23 16 26 C -0.15 -1.08 10.03 -39.51 -0.40 -1.48 16 27 C -0.08 -0.59 9.05 -39.59 -0.36 -0.95 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.68 7.85 -51.93 -0.41 0.27 16 30 H 0.06 0.71 5.65 -51.93 -0.29 0.41 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.41 3.99 6.34 -40.82 -0.26 3.73 16 34 H 0.41 6.85 7.94 -40.82 -0.32 6.53 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.14 0.66 8.04 -52.49 -0.42 0.24 16 41 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.13 0.80 6.91 -52.49 -0.36 0.44 16 LS Contribution 368.55 15.07 5.55 5.55 Total: -1.00 -30.87 368.55 -8.02 -38.89 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -5.80 Total: 5.05 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -3.08 Total: -1.93 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.12 Total: -45.20 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: 0.17 Total: -17.23 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.87 -8.02 -38.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326720674.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.006 kcal (2) G-P(sol) polarization free energy of solvation -30.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds