Wall clock time and date at job start Tue Mar 31 2020 13:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47326 * 2 1 4 4 H 1.09004 * 109.47038 * 54.99778 * 3 2 1 5 5 N 1.46506 * 109.47161 * 295.00435 * 3 2 1 6 6 C 1.34774 * 120.00584 * 84.99802 * 5 3 2 7 7 O 1.21347 * 119.99568 * 0.02562 * 6 5 3 8 8 C 1.49438 * 120.00177 * 180.02562 * 6 5 3 9 9 O 1.21347 * 120.00255 * 359.97438 * 8 6 5 10 10 N 1.34783 * 119.99934 * 179.97438 * 8 6 5 11 11 C 1.46507 * 119.99953 * 179.97438 * 10 8 6 12 12 C 1.52998 * 109.46823 * 179.97438 * 11 10 8 13 13 C 1.50699 * 109.46879 * 180.02562 * 12 11 10 14 14 H 1.08007 * 120.00157 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00224 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99879 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00224 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47118 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47240 * 119.99971 * 17 15 13 20 20 H 1.48503 * 109.46642 * 239.99721 * 17 15 13 21 21 C 1.50698 * 109.47307 * 175.00079 * 3 2 1 22 22 C 1.38244 * 119.97167 * 259.99931 * 21 3 2 23 23 C 1.38205 * 120.02298 * 180.02562 * 22 21 3 24 24 C 1.38459 * 119.97412 * 0.24026 * 23 22 21 25 25 F 1.35099 * 120.02759 * 179.72396 * 24 23 22 26 26 C 1.38466 * 119.94836 * 359.48301 * 24 23 22 27 27 C 1.38196 * 119.97140 * 0.53984 * 26 24 23 28 28 H 1.09003 * 109.47319 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46820 * 300.00225 * 1 2 3 30 30 H 1.09002 * 109.47245 * 59.99617 * 1 2 3 31 31 H 1.08998 * 109.46881 * 240.00302 * 2 1 3 32 32 H 1.09002 * 109.46743 * 120.00218 * 2 1 3 33 33 H 0.97006 * 119.99459 * 265.00091 * 5 3 2 34 34 H 0.96997 * 119.99953 * 0.02562 * 10 8 6 35 35 H 1.08998 * 109.46937 * 299.99976 * 11 10 8 36 36 H 1.08995 * 109.46807 * 60.00133 * 11 10 8 37 37 H 1.08998 * 109.47443 * 299.99787 * 12 11 10 38 38 H 1.09003 * 109.46931 * 60.00317 * 12 11 10 39 39 H 0.96999 * 119.99794 * 180.02562 * 16 15 13 40 40 H 1.07999 * 119.98898 * 0.02589 * 22 21 3 41 41 H 1.08002 * 120.00949 * 179.97438 * 23 22 21 42 42 H 1.07997 * 120.00962 * 180.25357 * 26 24 23 43 43 H 1.08000 * 119.98525 * 179.74601 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6524 2.0975 -1.2518 6 6 0.4352 2.6644 -1.3670 7 8 -0.3396 2.6327 -0.4336 8 6 0.0396 3.3321 -2.6441 9 8 0.8146 3.3642 -3.5773 10 7 -1.1779 3.8986 -2.7594 11 6 -1.5655 4.5537 -4.0113 12 6 -2.9849 5.1088 -3.8781 13 6 -3.3838 5.7821 -5.1660 14 1 -2.6937 5.8114 -5.9963 15 6 -4.6293 6.3615 -5.2840 16 7 -5.4695 6.3262 -4.2728 17 14 -5.1240 7.1954 -6.8807 18 1 -4.0086 7.0984 -7.8561 19 1 -6.3277 6.5264 -7.4363 20 1 -5.4289 8.6250 -6.6186 21 6 3.5419 1.4442 0.1238 22 6 4.1336 1.6872 1.3494 23 6 5.5109 1.6896 1.4640 24 6 6.2982 1.4535 0.3498 25 9 7.6447 1.4611 0.4595 26 6 5.7043 1.2046 -0.8760 27 6 4.3270 1.2032 -0.9883 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.2720 2.1231 -1.9978 34 1 -1.7972 3.8733 -2.0133 35 1 -0.8743 5.3693 -4.2236 36 1 -1.5339 3.8294 -4.8252 37 1 -3.6758 4.2929 -3.6660 38 1 -3.0169 5.8330 -3.0640 39 1 -6.3459 6.7335 -4.3559 40 1 3.5193 1.8752 2.2176 41 1 5.9729 1.8799 2.4215 42 1 6.3175 1.0163 -1.7449 43 1 3.8636 1.0131 -1.9452 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326720674.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:36 Heat of formation + Delta-G solvation = -125.287279 kcal Electronic energy + Delta-G solvation = -26009.548458 eV Core-core repulsion = 21967.853607 eV Total energy + Delta-G solvation = -4041.694852 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.91902 -41.93487 -40.52238 -39.48576 -37.13261 -36.56750 -34.84722 -33.42336 -32.12863 -31.68373 -31.67814 -27.84614 -26.89517 -25.05192 -24.15762 -23.23878 -22.84559 -21.75666 -21.32446 -19.72056 -18.65302 -18.57983 -18.04334 -17.39010 -17.13850 -16.90253 -16.61061 -16.47534 -16.42303 -16.06026 -15.88508 -15.13571 -15.01915 -14.86716 -14.49588 -14.32261 -14.31744 -14.07985 -13.83356 -13.67474 -13.24868 -13.03592 -12.96004 -12.82716 -12.52933 -12.44643 -12.29129 -12.14135 -12.00534 -11.78037 -11.67820 -11.41074 -10.67902 -10.62036 -10.32058 -10.18742 -10.10102 -9.61797 -8.23580 -6.34500 0.02895 0.23583 0.35292 1.33336 1.42346 1.43980 1.56576 2.14749 2.39513 2.52006 2.72227 3.11461 3.24154 3.43088 3.45430 3.71936 3.92056 4.05466 4.11465 4.28134 4.34445 4.39564 4.45677 4.45833 4.64167 4.81805 4.87701 4.91099 4.93967 4.99877 5.09193 5.12166 5.14015 5.20836 5.22842 5.41951 5.44323 5.50688 5.55458 5.76035 5.84898 5.95032 6.13307 6.36473 6.72146 6.80371 6.94900 7.35070 8.88564 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023703 B = 0.002097 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.986391 B =13351.396066 C =14059.934929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C 0.188 3.812 4 H 0.101 0.899 5 N -0.685 5.685 6 C 0.518 3.482 7 O -0.526 6.526 8 C 0.497 3.503 9 O -0.550 6.550 10 N -0.688 5.688 11 C 0.138 3.862 12 C 0.019 3.981 13 C -0.543 4.543 14 H 0.064 0.936 15 C 0.004 3.996 16 N -0.928 5.928 17 Si 0.967 3.033 18 H -0.262 1.262 19 H -0.278 1.278 20 H -0.278 1.278 21 C -0.107 4.107 22 C -0.075 4.075 23 C -0.151 4.151 24 C 0.081 3.919 25 F -0.149 7.149 26 C -0.153 4.153 27 C -0.086 4.086 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.033 0.967 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.416 0.584 34 H 0.415 0.585 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.008 0.992 38 H 0.008 0.992 39 H 0.265 0.735 40 H 0.157 0.843 41 H 0.154 0.846 42 H 0.149 0.851 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.867 -14.032 12.679 28.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C 0.085 3.915 4 H 0.119 0.881 5 N -0.340 5.340 6 C 0.299 3.701 7 O -0.402 6.402 8 C 0.278 3.722 9 O -0.429 6.429 10 N -0.339 5.339 11 C 0.015 3.985 12 C -0.019 4.019 13 C -0.581 4.581 14 H 0.083 0.917 15 C -0.195 4.195 16 N -0.567 5.567 17 Si 0.792 3.208 18 H -0.186 1.186 19 H -0.204 1.204 20 H -0.204 1.204 21 C -0.107 4.107 22 C -0.093 4.093 23 C -0.170 4.170 24 C 0.062 3.938 25 F -0.128 7.128 26 C -0.171 4.171 27 C -0.104 4.104 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.255 0.745 34 H 0.251 0.749 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.074 0.926 40 H 0.174 0.826 41 H 0.171 0.829 42 H 0.167 0.833 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 21.738 -13.977 12.736 28.811 hybrid contribution -0.342 0.610 -0.779 1.046 sum 21.396 -13.367 11.957 27.918 Atomic orbital electron populations 1.21813 0.95768 1.01254 1.01662 1.21956 0.95768 0.94246 1.04169 1.20079 0.90342 0.94573 0.86553 0.88114 1.45878 1.15184 1.55145 1.17764 1.19793 0.83352 0.79551 0.87429 1.90775 1.51364 1.58250 1.39806 1.20437 0.82788 0.80270 0.88687 1.90716 1.51588 1.59659 1.40968 1.46061 1.15616 1.54209 1.18054 1.21462 0.97171 0.95765 0.84077 1.19176 0.90340 0.95432 0.96952 1.21479 1.00535 1.36340 0.99794 0.91749 1.25920 0.96505 0.96766 1.00287 1.70084 1.08183 1.45694 1.32777 0.85359 0.78345 0.77982 0.79125 1.18629 1.20390 1.20414 1.19904 0.94052 1.02078 0.94696 1.21103 0.93867 0.96602 0.97716 1.21369 0.94145 1.02713 0.98754 1.18054 0.76807 1.03185 0.95799 1.91488 1.30238 1.94168 1.96922 1.21321 0.95923 1.02812 0.97072 1.20992 0.92583 0.97648 0.99201 0.92150 0.92682 0.94798 0.90739 0.88563 0.74537 0.74885 0.92126 0.92064 0.97364 0.97406 0.92586 0.82569 0.82854 0.83300 0.83792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 8.52 71.98 0.61 -2.16 16 2 C -0.12 -1.68 5.59 30.59 0.17 -1.51 16 3 C 0.19 2.83 2.46 44.24 0.11 2.94 16 4 H 0.10 1.65 7.44 -2.38 -0.02 1.63 16 5 N -0.69 -13.43 4.97 -447.45 -2.22 -15.65 16 6 C 0.52 13.83 6.46 87.27 0.56 14.39 16 7 O -0.53 -15.45 13.62 -3.24 -0.04 -15.50 16 8 C 0.50 16.16 7.89 87.26 0.69 16.85 16 9 O -0.55 -19.71 16.48 -3.24 -0.05 -19.76 16 10 N -0.69 -24.34 5.55 -464.42 -2.58 -26.92 16 11 C 0.14 5.70 5.61 86.38 0.48 6.18 16 12 C 0.02 0.92 5.09 29.85 0.15 1.08 16 13 C -0.54 -29.77 9.11 25.60 0.23 -29.53 16 14 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 15 C 0.00 0.22 5.46 84.65 0.46 0.68 16 16 N -0.93 -54.48 13.29 21.45 0.28 -54.19 16 17 Si 0.97 43.17 29.54 68.60 2.03 45.20 16 18 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 19 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 21 C -0.11 -1.35 4.96 -19.86 -0.10 -1.45 16 22 C -0.07 -0.81 9.67 22.26 0.22 -0.60 16 23 C -0.15 -1.79 10.03 22.31 0.22 -1.57 16 24 C 0.08 1.20 7.30 22.38 0.16 1.36 16 25 F -0.15 -2.59 17.27 44.97 0.78 -1.82 16 26 C -0.15 -2.00 10.03 22.31 0.22 -1.78 16 27 C -0.09 -1.06 9.05 22.26 0.20 -0.86 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.05 1.12 7.85 -2.39 -0.02 1.10 16 30 H 0.03 0.80 5.65 -2.39 -0.01 0.78 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.42 7.41 6.34 -92.70 -0.59 6.82 16 34 H 0.41 14.06 7.94 -92.71 -0.74 13.32 16 35 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 40 H 0.16 1.05 8.04 -2.91 -0.02 1.02 16 41 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 42 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 43 H 0.14 1.43 6.91 -2.91 -0.02 1.41 16 Total: -1.00 -65.58 368.55 2.32 -63.26 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -0.27 Total: 21.37 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 4.41 Total: 4.01 kcal Atomic # 7 Polarization: -92.25 SS G_CDS: -4.52 Total: -96.76 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -0.10 Total: -35.26 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.78 Total: -1.82 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -65.58 2.32 -63.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326720674.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.025 kcal (2) G-P(sol) polarization free energy of solvation -65.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds