Wall clock time and date at job start Tue Mar 31 2020 13:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47121 * 2 1 4 4 H 1.09007 * 109.47006 * 54.99763 * 3 2 1 5 5 C 1.50693 * 109.47368 * 175.00104 * 3 2 1 6 6 H 1.08004 * 120.00137 * 120.00378 * 5 3 2 7 7 C 1.37884 * 120.00113 * 300.00224 * 5 3 2 8 8 N 1.31518 * 119.99650 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00145 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46891 * 60.00174 * 9 7 5 11 11 H 1.48498 * 109.46933 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47006 * 299.99947 * 9 7 5 13 13 N 1.46502 * 109.47234 * 295.00186 * 3 2 1 14 14 C 1.34778 * 119.99940 * 85.00022 * 13 3 2 15 15 O 1.21571 * 119.99888 * 359.97438 * 14 13 3 16 16 N 1.34777 * 119.99818 * 180.02562 * 14 13 3 17 17 C 1.38485 * 119.99665 * 180.02562 * 16 14 13 18 18 N 1.35339 * 126.78788 * 0.18906 * 17 16 14 19 19 H 0.97000 * 126.54884 * 359.96881 * 18 17 16 20 20 N 1.40139 * 106.89189 * 180.25686 * 18 17 16 21 21 N 1.28672 * 108.87601 * 359.73143 * 20 18 17 22 22 C 1.34572 * 109.73591 * 0.02562 * 21 20 18 23 23 C 1.46928 * 125.97033 * 180.02562 * 22 21 20 24 24 O 1.21669 * 120.00377 * 179.75160 * 23 22 21 25 25 N 1.34784 * 119.99777 * 0.02562 * 23 22 21 26 26 C 1.46499 * 119.99893 * 179.72771 * 25 23 22 27 27 C 1.53004 * 117.49451 * 223.61956 * 26 25 23 28 28 C 1.52995 * 59.99969 * 252.51107 * 27 26 25 29 29 H 1.08996 * 109.47121 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47121 * 299.99873 * 1 2 3 31 31 H 1.09002 * 109.47499 * 59.99719 * 1 2 3 32 32 H 1.08997 * 109.46822 * 240.00021 * 2 1 3 33 33 H 1.08993 * 109.46945 * 120.00036 * 2 1 3 34 34 H 0.96992 * 119.99569 * 179.97438 * 8 7 5 35 35 H 0.96991 * 120.00123 * 264.99604 * 13 3 2 36 36 H 0.96991 * 120.00244 * 359.97438 * 16 14 13 37 37 H 0.97005 * 119.99846 * 359.72559 * 25 23 22 38 38 H 1.08995 * 115.55407 * 9.32961 * 26 25 23 39 39 H 1.08994 * 117.49901 * 0.02562 * 27 26 25 40 40 H 1.09004 * 117.49460 * 145.02056 * 27 26 25 41 41 H 1.09000 * 117.50218 * 252.51072 * 28 27 26 42 42 H 1.09002 * 117.51638 * 107.48384 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8890 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3374 2.1733 9 14 6.0050 0.8800 1.3811 10 1 6.5004 2.2799 1.3808 11 1 6.3979 0.2167 2.6503 12 1 6.5967 0.1453 0.2342 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3414 2.6318 -0.4321 16 7 0.0784 3.2666 -2.5187 17 6 -1.1723 3.8495 -2.6367 18 7 -2.1366 3.8981 -1.6884 19 1 -2.0849 3.5297 -0.7926 20 7 -3.2266 4.5763 -2.2504 21 7 -2.9291 4.9161 -3.4553 22 6 -1.6830 4.5020 -3.7497 23 6 -0.9867 4.7018 -5.0280 24 8 0.1464 4.2839 -5.1753 25 7 -1.6012 5.3528 -6.0356 26 6 -0.9047 5.5572 -7.3081 27 6 -1.0150 6.9371 -7.9600 28 6 -1.7628 5.7452 -8.5608 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.8293 -0.0610 2.9498 35 1 2.2718 2.1232 -1.9977 36 1 0.6978 3.2922 -3.2646 37 1 -2.5046 5.6860 -5.9181 38 1 0.0379 5.0215 -7.4195 39 1 -1.6054 7.6927 -7.4419 40 1 -0.1446 7.3094 -8.5003 41 1 -1.3845 5.3333 -9.4964 42 1 -2.8455 5.7162 -8.4382 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365537866.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:00 Heat of formation + Delta-G solvation = 48.137227 kcal Electronic energy + Delta-G solvation = -27021.153309 eV Core-core repulsion = 23039.191421 eV Total energy + Delta-G solvation = -3981.961888 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.32196 -40.00443 -39.64924 -37.28643 -36.05602 -34.84813 -33.38586 -32.82303 -32.24595 -31.13583 -29.75496 -27.13685 -24.38796 -23.79292 -23.07246 -22.71973 -21.80603 -21.27460 -20.86340 -19.82253 -18.84393 -18.44169 -17.41163 -16.75016 -16.36479 -16.25208 -15.75224 -15.35005 -15.11313 -14.78246 -14.54232 -14.50852 -14.42552 -13.73424 -12.99489 -12.83895 -12.71183 -12.35660 -11.93591 -11.86243 -11.69264 -11.56603 -11.45980 -11.39694 -11.14784 -10.94851 -10.85207 -10.59492 -10.45729 -10.37385 -10.30214 -10.04689 -9.75721 -9.25915 -9.07248 -8.69379 -8.56343 -8.12705 -6.26531 -4.36962 1.17415 1.57475 1.99015 2.79094 3.00238 3.02558 3.18464 3.24331 3.25943 3.37591 3.65754 4.19313 4.20813 4.43717 4.46604 4.57457 4.62913 4.68310 4.91651 5.05807 5.29334 5.36162 5.52232 5.65235 5.73729 5.91378 6.22198 6.24004 6.26389 6.43521 6.62883 6.86666 6.95514 7.06302 7.09676 7.17609 7.21479 7.46800 7.58503 7.70382 7.89190 7.98693 8.03402 8.35595 8.53841 8.77089 9.30381 10.78799 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017238 B = 0.002888 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.958498 B = 9694.385633 C =10848.750601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.130 4.130 3 C 0.284 3.716 4 H 0.054 0.946 5 C -0.540 4.540 6 H 0.063 0.937 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.905 3.095 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.698 5.698 14 C 0.692 3.308 15 O -0.584 6.584 16 N -0.646 5.646 17 C 0.412 3.588 18 N -0.457 5.457 19 H 0.463 0.537 20 N -0.065 5.065 21 N -0.186 5.186 22 C -0.167 4.167 23 C 0.623 3.377 24 O -0.548 6.548 25 N -0.689 5.689 26 C 0.082 3.918 27 C -0.194 4.194 28 C -0.190 4.190 29 H 0.026 0.974 30 H 0.051 0.949 31 H 0.033 0.967 32 H 0.034 0.966 33 H 0.104 0.896 34 H 0.267 0.733 35 H 0.395 0.605 36 H 0.436 0.564 37 H 0.410 0.590 38 H 0.141 0.859 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.657 8.263 -16.219 20.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.169 4.169 3 C 0.183 3.817 4 H 0.072 0.928 5 C -0.578 4.578 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.732 3.268 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.200 1.200 13 N -0.347 5.347 14 C 0.392 3.608 15 O -0.462 6.462 16 N -0.300 5.300 17 C 0.171 3.829 18 N -0.183 5.183 19 H 0.319 0.681 20 N -0.049 5.049 21 N -0.061 5.061 22 C -0.310 4.310 23 C 0.410 3.590 24 O -0.425 6.425 25 N -0.338 5.338 26 C -0.024 4.024 27 C -0.232 4.232 28 C -0.228 4.228 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.122 0.878 34 H 0.077 0.923 35 H 0.228 0.772 36 H 0.279 0.721 37 H 0.246 0.754 38 H 0.159 0.841 39 H 0.116 0.884 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.764 8.251 -15.010 19.716 hybrid contribution 2.087 -0.446 -0.085 2.136 sum -7.677 7.805 -15.095 18.647 Atomic orbital electron populations 1.21832 0.98353 0.98359 1.00909 1.21986 0.92617 0.99566 1.02758 1.18917 0.94576 0.89060 0.79181 0.92802 1.21140 0.90222 1.39791 1.06675 0.91846 1.24870 0.98891 0.94523 0.95200 1.69867 1.35451 1.37130 1.09317 0.86453 0.84363 0.78438 0.77574 1.20092 1.21046 1.20026 1.45927 1.12285 1.56521 1.19955 1.16207 0.84485 0.78837 0.81247 1.90711 1.51950 1.65300 1.38197 1.42636 1.13072 1.55939 1.18398 1.18426 0.83617 0.91578 0.89274 1.48470 1.10238 1.43601 1.16017 0.68134 1.81835 1.05743 1.14596 1.02692 1.74452 1.10723 1.13336 1.07638 1.20691 0.95452 1.18030 0.96859 1.16408 0.84510 0.76824 0.81262 1.90740 1.17949 1.51879 1.81940 1.45014 1.18828 1.57827 1.12128 1.21622 0.98720 0.99956 0.82139 1.23442 1.03533 0.92190 1.04056 1.23391 0.99351 1.02594 0.97450 0.95535 0.92995 0.94754 0.94690 0.87840 0.92284 0.77189 0.72129 0.75381 0.84149 0.88356 0.87916 0.87807 0.88321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 8.51 37.16 0.32 -2.50 16 2 C -0.13 -2.93 5.45 -26.73 -0.15 -3.08 16 3 C 0.28 6.54 2.24 -69.09 -0.15 6.39 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 5 C -0.54 -13.34 8.73 -34.44 -0.30 -13.64 16 6 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.37 11.30 55.43 0.63 -22.75 16 9 Si 0.90 19.74 29.54 -169.99 -5.02 14.72 16 10 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.29 -6.24 7.11 56.52 0.40 -5.83 16 12 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 13 N -0.70 -13.05 5.03 -59.82 -0.30 -13.35 16 14 C 0.69 12.35 7.09 -86.92 -0.62 11.74 16 15 O -0.58 -11.53 11.06 5.30 0.06 -11.47 16 16 N -0.65 -9.63 5.37 -15.45 -0.08 -9.72 16 17 C 0.41 6.18 7.77 -153.09 -1.19 4.99 16 18 N -0.46 -6.82 7.04 31.48 0.22 -6.60 16 19 H 0.46 7.01 6.55 -182.57 -1.20 5.81 16 20 N -0.07 -0.97 13.85 60.35 0.84 -0.13 16 21 N -0.19 -2.59 12.03 33.14 0.40 -2.19 16 22 C -0.17 -2.32 7.05 -82.96 -0.59 -2.91 16 23 C 0.62 8.07 7.80 -12.74 -0.10 7.97 16 24 O -0.55 -7.98 14.65 5.22 0.08 -7.90 16 25 N -0.69 -6.86 5.56 -55.03 -0.31 -7.17 16 26 C 0.08 0.69 6.43 -67.93 -0.44 0.25 16 27 C -0.19 -1.26 10.46 -26.73 -0.28 -1.54 16 28 C -0.19 -1.16 10.45 -26.73 -0.28 -1.44 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 1.12 7.84 -51.93 -0.41 0.71 16 31 H 0.03 0.68 5.64 -51.93 -0.29 0.39 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 34 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 35 H 0.39 6.43 8.55 -40.82 -0.35 6.08 16 36 H 0.44 5.92 6.86 -40.82 -0.28 5.64 16 37 H 0.41 3.53 8.51 -40.82 -0.35 3.19 16 38 H 0.14 1.30 7.40 -51.93 -0.38 0.92 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 353.81 15.07 5.33 5.33 Total: -1.00 -27.62 353.81 -8.06 -35.68 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: -6.04 Total: 17.65 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: -3.86 Total: 7.89 kcal Atomic # 7 Polarization: -63.30 SS G_CDS: 1.39 Total: -61.90 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: 0.14 Total: -19.37 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.62 -8.06 -35.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365537866.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.820 kcal (2) G-P(sol) polarization free energy of solvation -27.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds