Wall clock time and date at job start Tue Mar 31 2020 13:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32565 * 1 3 3 C 1.50698 * 119.99869 * 2 1 4 4 N 1.46499 * 109.47172 * 95.27191 * 3 2 1 5 5 C 1.34780 * 119.99935 * 179.97438 * 4 3 2 6 6 O 1.21585 * 119.99947 * 0.02562 * 5 4 3 7 7 N 1.34775 * 119.99795 * 180.02562 * 5 4 3 8 8 C 1.39964 * 119.99783 * 174.85366 * 7 5 4 9 9 C 1.39278 * 119.94733 * 145.76534 * 8 7 5 10 10 C 1.38496 * 120.42841 * 180.02562 * 9 8 7 11 11 C 1.37680 * 120.32182 * 359.97438 * 10 9 8 12 12 C 1.40750 * 119.88278 * 359.97438 * 11 10 9 13 13 C 1.41408 * 120.20984 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99945 * 205.17532 * 13 12 11 15 15 C 1.39926 * 119.99805 * 25.17394 * 13 12 11 16 16 N 1.30827 * 120.00455 * 16.79700 * 15 13 12 17 17 Si 1.86800 * 119.99754 * 196.79604 * 15 13 12 18 18 H 1.48497 * 109.47235 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47358 * 120.00288 * 17 15 13 20 20 H 1.48506 * 109.47130 * 240.00261 * 17 15 13 21 21 C 1.38239 * 119.94273 * 325.48983 * 8 7 5 22 22 C 1.47813 * 119.99680 * 180.26994 * 2 1 3 23 23 C 1.39536 * 120.13810 * 244.45023 * 22 2 1 24 24 C 1.37973 * 119.85431 * 179.76989 * 23 22 2 25 25 C 1.38349 * 120.14077 * 0.51253 * 24 23 22 26 26 C 1.38339 * 120.28234 * 359.73845 * 25 24 23 27 27 C 1.37969 * 120.14683 * 0.02562 * 26 25 24 28 28 H 1.08000 * 120.00078 * 359.73228 * 1 2 3 29 29 H 1.08002 * 120.00472 * 179.72510 * 1 2 3 30 30 H 1.09001 * 109.46894 * 215.26907 * 3 2 1 31 31 H 1.08996 * 109.47129 * 335.27101 * 3 2 1 32 32 H 0.97000 * 119.99934 * 359.97438 * 4 3 2 33 33 H 0.96998 * 120.00200 * 354.84924 * 7 5 4 34 34 H 1.08000 * 119.78826 * 359.97438 * 9 8 7 35 35 H 1.07997 * 119.84045 * 179.97438 * 10 9 8 36 36 H 1.07997 * 120.06395 * 179.97438 * 11 10 9 37 37 H 0.97004 * 120.00435 * 179.97438 * 16 15 13 38 38 H 1.08007 * 120.16370 * 0.02562 * 21 8 7 39 39 H 1.08001 * 120.07381 * 0.02562 * 23 22 2 40 40 H 1.08001 * 119.93349 * 180.24749 * 24 23 22 41 41 H 1.07996 * 119.85348 * 179.72302 * 25 24 23 42 42 H 1.08012 * 119.92389 * 180.02562 * 26 25 24 43 43 H 1.08005 * 120.07465 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0791 1.3051 0.0000 4 7 2.4332 1.6646 1.3754 5 6 3.1158 2.8006 1.6205 6 8 3.4372 3.5273 0.7003 7 7 3.4419 3.1310 2.8858 8 6 4.2423 4.2525 3.1320 9 6 4.0334 5.0180 4.2766 10 6 4.8192 6.1300 4.5298 11 6 5.8167 6.4907 3.6520 12 6 6.0401 5.7260 2.4917 13 6 7.0623 6.0905 1.5852 14 1 6.9937 5.7980 0.5478 15 6 8.1628 6.8302 2.0322 16 7 8.4236 6.9063 3.3119 17 14 9.2595 7.7090 0.8016 18 1 8.7536 7.4671 -0.5734 19 1 9.2506 9.1669 1.0835 20 1 10.6465 7.1911 0.9165 21 6 5.2426 4.5952 2.2415 22 6 2.0646 -1.2801 -0.0060 23 6 2.8657 -1.6318 1.0811 24 6 3.5491 -2.8303 1.0713 25 6 3.4499 -3.6778 -0.0177 26 6 2.6616 -3.3325 -1.1008 27 6 1.9692 -2.1391 -1.1014 28 1 -0.5400 0.9353 0.0044 29 1 -0.5401 -0.9353 -0.0045 30 1 2.9874 1.2002 -0.5934 31 1 1.4524 2.0864 -0.4299 32 1 2.1764 1.0850 2.1095 33 1 3.1219 2.5917 3.6258 34 1 3.2531 4.7432 4.9709 35 1 4.6487 6.7171 5.4201 36 1 6.4267 7.3589 3.8533 37 1 9.1867 7.4188 3.6218 38 1 5.4080 3.9998 1.3556 39 1 2.9472 -0.9692 1.9300 40 1 4.1663 -3.1056 1.9138 41 1 3.9905 -4.6127 -0.0224 42 1 2.5880 -3.9986 -1.9478 43 1 1.3544 -1.8705 -1.9478 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001466577281.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:27 Heat of formation + Delta-G solvation = 35.980147 kcal Electronic energy + Delta-G solvation = -25116.639190 eV Core-core repulsion = 21512.706643 eV Total energy + Delta-G solvation = -3603.932547 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.02149 -39.38168 -37.40198 -35.99625 -34.33883 -33.33915 -32.78390 -31.15346 -29.94928 -29.75499 -28.16582 -25.98477 -25.20394 -23.23148 -22.69778 -21.63292 -20.79909 -20.11216 -19.43015 -17.96231 -17.63896 -16.88477 -16.00596 -15.60214 -15.36827 -15.18972 -14.93475 -14.63215 -14.43238 -14.27995 -14.11574 -13.67348 -13.47525 -13.08158 -12.86501 -12.70821 -12.54796 -12.08678 -12.02328 -11.59186 -11.37782 -11.14563 -11.10519 -11.07278 -10.86337 -10.40636 -10.21315 -9.94929 -9.62707 -9.42623 -9.19039 -9.07681 -8.96070 -8.87724 -8.81327 -7.38246 -6.83245 -6.64879 -4.27482 0.92189 1.16457 1.72099 2.78603 2.95237 3.13536 3.20195 3.21851 3.26177 3.52311 3.77002 4.01482 4.34705 4.58974 4.61119 4.71215 4.72821 4.75023 4.87867 5.20072 5.28448 5.38422 5.43254 5.66370 5.70899 5.77486 5.79305 6.03214 6.19563 6.26627 6.28650 6.30051 6.40163 6.45649 6.58488 6.73354 6.83800 6.85565 7.10436 7.15445 7.30458 7.40920 7.74979 7.89202 8.05811 8.17558 8.30997 8.49308 8.72968 8.96185 9.03814 9.10511 10.27355 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015402 B = 0.002559 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.460345 B =10938.231957 C =11681.382193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 C 0.181 3.819 4 N -0.747 5.747 5 C 0.698 3.302 6 O -0.565 6.565 7 N -0.681 5.681 8 C 0.170 3.830 9 C -0.263 4.263 10 C -0.092 4.092 11 C -0.174 4.174 12 C 0.120 3.880 13 C -0.457 4.457 14 H 0.078 0.922 15 C 0.075 3.925 16 N -0.796 5.796 17 Si 0.907 3.093 18 H -0.260 1.260 19 H -0.272 1.272 20 H -0.275 1.275 21 C -0.209 4.209 22 C -0.050 4.050 23 C -0.102 4.102 24 C -0.118 4.118 25 C -0.121 4.121 26 C -0.121 4.121 27 C -0.108 4.108 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.391 0.609 33 H 0.393 0.607 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.119 0.881 37 H 0.278 0.722 38 H 0.106 0.894 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.439 -17.985 -3.499 22.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.109 4.109 3 C 0.057 3.943 4 N -0.405 5.405 5 C 0.399 3.601 6 O -0.441 6.441 7 N -0.328 5.328 8 C 0.077 3.923 9 C -0.285 4.285 10 C -0.111 4.111 11 C -0.193 4.193 12 C 0.117 3.883 13 C -0.487 4.487 14 H 0.096 0.904 15 C -0.142 4.142 16 N -0.422 5.422 17 Si 0.731 3.269 18 H -0.184 1.184 19 H -0.198 1.198 20 H -0.201 1.201 21 C -0.231 4.231 22 C -0.050 4.050 23 C -0.120 4.120 24 C -0.136 4.136 25 C -0.139 4.139 26 C -0.139 4.139 27 C -0.126 4.126 28 H 0.128 0.872 29 H 0.122 0.878 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.225 0.775 33 H 0.226 0.774 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.136 0.864 37 H 0.089 0.911 38 H 0.124 0.876 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.947 -17.231 -4.244 21.393 hybrid contribution 0.283 -0.256 0.317 0.497 sum -11.664 -17.487 -3.927 21.384 Atomic orbital electron populations 1.24355 0.94468 1.02613 0.96788 1.20578 0.94483 0.92768 1.03070 1.20037 0.99137 0.91955 0.83144 1.45163 1.62281 1.24329 1.08708 1.15968 0.78946 0.81411 0.83824 1.90983 1.58319 1.51572 1.43179 1.42582 1.54034 1.30158 1.06001 1.17221 0.91215 0.87114 0.96718 1.20003 1.06384 1.01403 1.00715 1.20441 0.96336 0.96108 0.98241 1.21336 0.99219 1.01794 0.97000 1.17498 0.90427 0.88648 0.91747 1.19610 1.02990 1.29341 0.96770 0.90364 1.25895 0.97947 0.94684 0.95633 1.69839 1.25233 1.32102 1.15055 0.86282 0.79320 0.79467 0.81782 1.18363 1.19751 1.20083 1.21001 0.99486 1.00772 1.01805 1.18908 0.97747 0.93683 0.94707 1.21247 0.96161 0.96631 0.98002 1.21130 0.99384 0.94443 0.98652 1.21222 0.99001 0.99758 0.93931 1.21087 0.97442 0.96836 0.98524 1.21266 0.99713 0.94037 0.97571 0.87213 0.87756 0.90907 0.90720 0.77533 0.77352 0.89408 0.89100 0.86356 0.91078 0.87563 0.86066 0.85855 0.86128 0.85993 0.85891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 13.93 28.82 0.40 -0.69 16 2 C -0.11 -1.01 4.81 -102.62 -0.49 -1.51 16 3 C 0.18 2.20 5.81 -5.20 -0.03 2.17 16 4 N -0.75 -9.81 5.55 -66.42 -0.37 -10.18 16 5 C 0.70 12.96 8.29 -86.92 -0.72 12.24 16 6 O -0.57 -13.29 14.10 5.29 0.07 -13.22 16 7 N -0.68 -12.48 5.34 -14.27 -0.08 -12.56 16 8 C 0.17 3.94 6.25 -83.76 -0.52 3.42 16 9 C -0.26 -5.92 9.97 -39.10 -0.39 -6.31 16 10 C -0.09 -2.20 10.02 -39.69 -0.40 -2.59 16 11 C -0.17 -4.66 8.69 -38.84 -0.34 -4.99 16 12 C 0.12 3.38 5.57 -106.85 -0.59 2.78 16 13 C -0.46 -12.85 9.05 -37.74 -0.34 -13.19 16 14 H 0.08 2.18 7.90 -52.49 -0.41 1.77 16 15 C 0.08 1.97 5.16 -17.35 -0.09 1.88 16 16 N -0.80 -21.10 10.94 55.55 0.61 -20.49 16 17 Si 0.91 19.48 29.59 -169.99 -5.03 14.44 16 18 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 19 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 21 C -0.21 -5.58 8.39 -38.69 -0.32 -5.90 16 22 C -0.05 -0.49 5.32 -105.02 -0.56 -1.05 16 23 C -0.10 -1.00 9.77 -39.19 -0.38 -1.39 16 24 C -0.12 -1.07 10.03 -39.64 -0.40 -1.47 16 25 C -0.12 -1.01 10.04 -39.50 -0.40 -1.41 16 26 C -0.12 -1.00 10.03 -39.64 -0.40 -1.39 16 27 C -0.11 -0.96 9.71 -39.20 -0.38 -1.34 16 28 H 0.11 0.77 8.01 -52.49 -0.42 0.35 16 29 H 0.10 0.67 8.05 -52.49 -0.42 0.25 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 0.93 8.00 -51.93 -0.42 0.52 16 32 H 0.39 3.95 7.74 -40.82 -0.32 3.63 16 33 H 0.39 5.53 8.84 -40.82 -0.36 5.17 16 34 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 36 H 0.12 3.25 6.16 -52.49 -0.32 2.92 16 37 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 38 H 0.11 2.95 6.48 -52.48 -0.34 2.61 16 39 H 0.12 1.10 7.31 -52.49 -0.38 0.72 16 40 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 43 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 LS Contribution 370.95 15.07 5.59 5.59 Total: -1.00 -32.72 370.95 -11.05 -43.77 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -5.49 Total: 13.40 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: -6.36 Total: -20.76 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: 0.16 Total: -43.23 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.07 Total: -13.22 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.44 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.72 -11.05 -43.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466577281.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.747 kcal (2) G-P(sol) polarization free energy of solvation -32.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds