Wall clock time and date at job start Tue Mar 31 2020 14:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.49790 * 2 1 4 4 C 1.53041 * 109.50172 * 239.93639 * 2 1 3 5 5 C 1.53037 * 109.53336 * 301.38163 * 4 2 1 6 6 C 1.53197 * 109.31441 * 298.63315 * 5 4 2 7 7 H 1.08996 * 109.58476 * 294.84890 * 6 5 4 8 8 C 1.53002 * 109.58867 * 174.42589 * 6 5 4 9 9 N 1.46904 * 109.47066 * 207.61448 * 8 6 5 10 10 N 1.46919 * 108.77483 * 54.63678 * 6 5 4 11 11 C 1.34777 * 120.63482 * 126.37029 * 10 6 5 12 12 O 1.21759 * 119.99594 * 313.61317 * 11 10 6 13 13 C 1.46229 * 120.00334 * 133.60674 * 11 10 6 14 14 S 1.75668 * 125.22914 * 310.34764 * 13 11 10 15 15 C 1.75471 * 92.09411 * 180.02562 * 14 13 11 16 16 C 1.32771 * 111.35852 * 359.97438 * 15 14 13 17 17 C 1.39544 * 125.23044 * 130.36924 * 13 11 10 18 18 C 1.40538 * 123.71204 * 0.25036 * 17 13 11 19 19 H 1.08003 * 119.99888 * 336.05996 * 18 17 13 20 20 C 1.40308 * 120.00326 * 156.06003 * 18 17 13 21 21 N 1.30642 * 119.99927 * 0.41641 * 20 18 17 22 22 Si 1.86800 * 120.00354 * 180.41291 * 20 18 17 23 23 H 1.48500 * 109.46876 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46895 * 119.99949 * 22 20 18 25 25 H 1.48496 * 109.47281 * 240.00049 * 22 20 18 26 26 C 1.46923 * 118.73865 * 306.64477 * 10 6 5 27 27 H 1.09005 * 109.58867 * 293.57076 * 26 10 6 28 28 C 1.53004 * 109.59103 * 173.14412 * 26 10 6 29 29 H 1.09001 * 109.46978 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47127 * 300.06974 * 1 2 3 31 31 H 1.08997 * 109.46648 * 60.06541 * 1 2 3 32 32 H 1.08995 * 109.46238 * 181.36369 * 4 2 1 33 33 H 1.08996 * 109.44855 * 61.39269 * 4 2 1 34 34 H 1.09000 * 109.49632 * 178.68181 * 5 4 2 35 35 H 1.09001 * 109.52873 * 58.59882 * 5 4 2 36 36 H 1.09001 * 109.46720 * 327.61431 * 8 6 5 37 37 H 1.08994 * 109.46926 * 87.60967 * 8 6 5 38 38 H 1.00894 * 110.99472 * 169.88832 * 9 8 6 39 39 H 1.00898 * 110.99488 * 293.83441 * 9 8 6 40 40 H 1.07998 * 124.32192 * 180.02562 * 15 14 13 41 41 H 1.08005 * 122.78066 * 179.97438 * 16 15 14 42 42 H 0.96999 * 120.00575 * 179.97438 * 21 20 18 43 43 H 1.09000 * 109.46838 * 80.50671 * 28 26 10 44 44 H 1.08992 * 109.47271 * 200.51482 * 28 26 10 45 45 H 1.09006 * 109.46812 * 320.51193 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0409 -0.7227 -1.2485 5 6 1.5037 -2.1556 -1.2661 6 6 2.0154 -2.9037 -0.0310 7 1 3.0993 -3.0035 -0.0873 8 6 1.3724 -4.2907 0.0315 9 7 1.3008 -4.7346 1.4300 10 7 1.6529 -2.1382 1.1694 11 6 0.9758 -2.7222 2.1779 12 8 0.0021 -3.4127 1.9378 13 6 1.4107 -2.5266 3.5602 14 16 3.0541 -2.7352 4.1447 15 6 2.5938 -2.3094 5.7836 16 6 1.2976 -2.0337 5.8657 17 6 0.5839 -2.1460 4.6180 18 6 -0.7940 -1.9044 4.4831 19 1 -1.2023 -1.6288 3.5220 20 6 -1.6392 -2.0212 5.5969 21 7 -1.1441 -2.3467 6.7613 22 14 -3.4723 -1.7114 5.4152 23 1 -3.7776 -1.3611 4.0047 24 1 -4.2213 -2.9365 5.7937 25 1 -3.8753 -0.5908 6.3023 26 6 2.0371 -0.7222 1.2470 27 1 3.1229 -0.6404 1.2971 28 6 1.4141 -0.0891 2.4929 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5149 0.8893 31 1 -0.3632 0.5128 -0.8906 32 1 3.1306 -0.7435 -1.2357 33 1 1.6982 -0.1955 -2.1388 34 1 1.8488 -2.6624 -2.1673 35 1 0.4140 -2.1364 -1.2542 36 1 0.3669 -4.2441 -0.3869 37 1 1.9728 -4.9957 -0.5433 38 1 0.7366 -5.5665 1.5167 39 1 2.2237 -4.8824 1.8101 40 1 3.2777 -2.2752 6.6188 41 1 0.8176 -1.7498 6.7906 42 1 -1.7282 -2.4271 7.5315 43 1 2.0154 -0.3395 3.3669 44 1 1.3812 0.9936 2.3724 45 1 0.4019 -0.4708 2.6268 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576652527.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:37 Heat of formation + Delta-G solvation = 46.238048 kcal Electronic energy + Delta-G solvation = -27599.278811 eV Core-core repulsion = 24131.235032 eV Total energy + Delta-G solvation = -3468.043779 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.99947 -36.92239 -36.00363 -34.37433 -32.80221 -32.49654 -31.42672 -28.81001 -27.56006 -26.87270 -25.97884 -24.06181 -22.77036 -21.58028 -20.82534 -19.64307 -18.73841 -18.21347 -16.39531 -15.72277 -15.65223 -15.25614 -15.09718 -14.91024 -14.33527 -13.87321 -13.72277 -13.56012 -13.42616 -13.12622 -12.65594 -12.31623 -12.17200 -12.07028 -11.88936 -11.54247 -11.46693 -11.32794 -11.17298 -11.14197 -10.95292 -10.80233 -10.67337 -10.44462 -10.30364 -10.21943 -10.04086 -9.92930 -9.86614 -9.35057 -9.08656 -8.15884 -7.58543 -7.18304 -6.93126 -6.74233 -6.63297 -4.28058 2.44767 3.05807 3.10263 3.17851 3.26725 3.69657 3.95911 4.05053 4.14893 4.57259 4.93485 5.05335 5.10358 5.27850 5.35169 5.43982 5.49392 5.63418 5.72001 5.85422 5.94441 5.96301 6.01392 6.04063 6.10008 6.17037 6.21852 6.26585 6.30761 6.47577 6.50074 6.55967 6.78395 6.81039 6.98392 7.08385 7.22412 7.40501 7.50332 7.59911 7.68499 7.90780 7.98048 8.05737 8.47541 8.77597 8.84385 8.99074 9.93732 10.17671 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013205 B = 0.006130 C = 0.005420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.841132 B = 4566.851794 C = 5164.599607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.103 4.103 3 H 0.069 0.931 4 C -0.108 4.108 5 C -0.130 4.130 6 C 0.163 3.837 7 H 0.050 0.950 8 C 0.063 3.937 9 N -0.797 5.797 10 N -0.652 5.652 11 C 0.663 3.337 12 O -0.474 6.474 13 C -0.380 4.380 14 S -0.033 6.033 15 C -0.233 4.233 16 C -0.098 4.098 17 C 0.125 3.875 18 C -0.404 4.404 19 H 0.080 0.920 20 C 0.074 3.926 21 N -0.804 5.804 22 Si 0.916 3.084 23 H -0.259 1.259 24 H -0.273 1.273 25 H -0.274 1.274 26 C 0.172 3.828 27 H 0.050 0.950 28 C -0.156 4.156 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.041 0.959 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.015 0.985 38 H 0.336 0.664 39 H 0.313 0.687 40 H 0.130 0.870 41 H 0.152 0.848 42 H 0.280 0.720 43 H 0.075 0.925 44 H 0.044 0.956 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.173 2.329 -9.576 11.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 H 0.087 0.913 4 C -0.146 4.146 5 C -0.169 4.169 6 C 0.058 3.942 7 H 0.068 0.932 8 C -0.068 4.068 9 N -0.331 5.331 10 N -0.394 5.394 11 C 0.455 3.545 12 O -0.344 6.344 13 C -0.500 4.500 14 S 0.224 5.776 15 C -0.366 4.366 16 C -0.130 4.130 17 C 0.114 3.886 18 C -0.437 4.437 19 H 0.098 0.902 20 C -0.144 4.144 21 N -0.431 5.431 22 Si 0.740 3.260 23 H -0.183 1.183 24 H -0.198 1.198 25 H -0.200 1.200 26 C 0.068 3.932 27 H 0.068 0.932 28 C -0.214 4.214 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.033 0.967 38 H 0.150 0.850 39 H 0.128 0.872 40 H 0.148 0.852 41 H 0.169 0.831 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.063 0.937 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.515 2.151 -9.943 11.572 hybrid contribution -1.331 -0.424 0.369 1.445 sum 4.184 1.727 -9.574 10.590 Atomic orbital electron populations 1.21843 0.94930 1.02716 1.00664 1.21494 0.96770 0.98609 0.95374 0.91258 1.21470 0.99931 0.95671 0.97522 1.22022 1.01813 0.95787 0.97314 1.20835 0.96743 0.90809 0.85850 0.93212 1.21905 1.00183 0.94121 0.90632 1.61521 1.16379 1.39125 1.16079 1.47558 1.64694 1.09397 1.17736 1.15791 0.80725 0.75970 0.81975 1.90469 1.25216 1.34658 1.84089 1.23140 0.94023 1.35378 0.97422 1.82880 1.13799 1.78039 1.02871 1.24979 0.99946 1.12639 0.99071 1.21966 0.91659 0.98897 1.00510 1.17828 0.93001 0.89418 0.88305 1.19210 0.91126 1.37922 0.95431 0.90195 1.26015 1.01754 0.92186 0.94407 1.69580 1.37535 1.35346 1.00659 0.86117 0.81491 0.78592 0.79758 1.18266 1.19847 1.19958 1.20610 0.97152 0.81318 0.94159 0.93199 1.22318 1.03356 0.98266 0.97437 0.91586 0.92490 0.94016 0.92425 0.92527 0.92334 0.91024 0.90695 0.96681 0.84993 0.87230 0.85182 0.83099 0.90890 0.90653 0.93725 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 8.27 37.16 0.31 -1.89 16 2 C -0.10 -1.45 2.70 -90.72 -0.25 -1.70 16 3 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.11 -1.34 5.43 -26.69 -0.14 -1.48 16 5 C -0.13 -1.73 4.93 -26.61 -0.13 -1.86 16 6 C 0.16 2.54 3.40 -67.60 -0.23 2.31 16 7 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 8 C 0.06 1.00 5.93 -3.82 -0.02 0.98 16 9 N -0.80 -14.54 3.76 -10.37 -0.04 -14.58 16 10 N -0.65 -11.89 2.39 -159.65 -0.38 -12.27 16 11 C 0.66 14.51 2.98 -13.05 -0.04 14.47 16 12 O -0.47 -11.63 13.11 5.14 0.07 -11.56 16 13 C -0.38 -8.84 3.45 -35.89 -0.12 -8.96 16 14 S -0.03 -0.69 22.61 -107.50 -2.43 -3.12 16 15 C -0.23 -5.09 11.07 28.86 0.32 -4.77 16 16 C -0.10 -2.38 9.10 -39.13 -0.36 -2.73 16 17 C 0.13 3.18 4.68 -106.21 -0.50 2.69 16 18 C -0.40 -10.57 7.95 -37.94 -0.30 -10.87 16 19 H 0.08 2.16 6.97 -52.48 -0.37 1.79 16 20 C 0.07 1.83 5.46 -17.28 -0.09 1.74 16 21 N -0.80 -20.02 10.47 55.57 0.58 -19.44 16 22 Si 0.92 19.19 29.56 -169.99 -5.03 14.16 16 23 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 25 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 26 C 0.17 2.89 3.08 -67.82 -0.21 2.68 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 28 C -0.16 -2.93 6.36 37.16 0.24 -2.69 16 29 H 0.07 1.16 5.97 -51.93 -0.31 0.85 16 30 H 0.06 0.92 6.80 -51.93 -0.35 0.56 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 1.05 6.19 -51.93 -0.32 0.73 16 36 H 0.07 1.25 7.67 -51.93 -0.40 0.86 16 37 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 38 H 0.34 5.91 9.06 -39.29 -0.36 5.56 16 39 H 0.31 5.65 9.01 -39.29 -0.35 5.29 16 40 H 0.13 2.50 8.06 -52.49 -0.42 2.08 16 41 H 0.15 3.77 6.04 -52.48 -0.32 3.46 16 42 H 0.28 6.37 8.29 -40.82 -0.34 6.03 16 43 H 0.07 1.55 5.90 -51.93 -0.31 1.25 16 44 H 0.04 0.72 7.98 -51.93 -0.41 0.31 16 45 H 0.08 1.64 4.57 -51.93 -0.24 1.41 16 LS Contribution 345.67 15.07 5.21 5.21 Total: -1.00 -27.05 345.67 -10.22 -37.28 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: -6.67 Total: 16.42 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -1.53 Total: -12.10 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: 0.16 Total: -46.29 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.07 Total: -11.56 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Atomic # 16 Polarization: -0.69 SS G_CDS: -2.43 Total: -3.12 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.05 -10.22 -37.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576652527.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.515 kcal (2) G-P(sol) polarization free energy of solvation -27.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds