Wall clock time and date at job start Tue Mar 31 2020 14:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.49790 * 2 1 4 4 C 1.53041 * 109.50172 * 239.93639 * 2 1 3 5 5 C 1.53037 * 109.53336 * 301.38163 * 4 2 1 6 6 C 1.53197 * 109.31441 * 298.63315 * 5 4 2 7 7 H 1.08996 * 109.58476 * 294.84890 * 6 5 4 8 8 C 1.53002 * 109.58867 * 174.42589 * 6 5 4 9 9 N 1.46904 * 109.47066 * 207.61448 * 8 6 5 10 10 N 1.46919 * 108.77483 * 54.63678 * 6 5 4 11 11 C 1.34777 * 120.63482 * 126.37029 * 10 6 5 12 12 O 1.21759 * 119.99594 * 313.61317 * 11 10 6 13 13 C 1.46229 * 120.00334 * 133.60674 * 11 10 6 14 14 S 1.75668 * 125.22914 * 310.34764 * 13 11 10 15 15 C 1.75471 * 92.09411 * 180.02562 * 14 13 11 16 16 C 1.32771 * 111.35852 * 359.97438 * 15 14 13 17 17 C 1.39544 * 125.23044 * 130.36924 * 13 11 10 18 18 C 1.40538 * 123.71204 * 0.25036 * 17 13 11 19 19 H 1.08003 * 119.99888 * 336.05996 * 18 17 13 20 20 C 1.40308 * 120.00326 * 156.06003 * 18 17 13 21 21 N 1.30642 * 119.99927 * 0.41641 * 20 18 17 22 22 Si 1.86800 * 120.00354 * 180.41291 * 20 18 17 23 23 H 1.48500 * 109.46876 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46895 * 119.99949 * 22 20 18 25 25 H 1.48496 * 109.47281 * 240.00049 * 22 20 18 26 26 C 1.46923 * 118.73865 * 306.64477 * 10 6 5 27 27 H 1.09005 * 109.58867 * 293.57076 * 26 10 6 28 28 C 1.53004 * 109.59103 * 173.14412 * 26 10 6 29 29 H 1.09001 * 109.46978 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47127 * 300.06974 * 1 2 3 31 31 H 1.08997 * 109.46648 * 60.06541 * 1 2 3 32 32 H 1.08995 * 109.46238 * 181.36369 * 4 2 1 33 33 H 1.08996 * 109.44855 * 61.39269 * 4 2 1 34 34 H 1.09000 * 109.49632 * 178.68181 * 5 4 2 35 35 H 1.09001 * 109.52873 * 58.59882 * 5 4 2 36 36 H 1.09001 * 109.46720 * 327.61431 * 8 6 5 37 37 H 1.08994 * 109.46926 * 87.60967 * 8 6 5 38 38 H 1.00894 * 110.99472 * 169.88832 * 9 8 6 39 39 H 1.00898 * 110.99488 * 293.83441 * 9 8 6 40 40 H 1.07998 * 124.32192 * 180.02562 * 15 14 13 41 41 H 1.08005 * 122.78066 * 179.97438 * 16 15 14 42 42 H 0.96999 * 120.00575 * 179.97438 * 21 20 18 43 43 H 1.09000 * 109.46838 * 80.50671 * 28 26 10 44 44 H 1.08992 * 109.47271 * 200.51482 * 28 26 10 45 45 H 1.09006 * 109.46812 * 320.51193 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0409 -0.7227 -1.2485 5 6 1.5037 -2.1556 -1.2661 6 6 2.0154 -2.9037 -0.0310 7 1 3.0993 -3.0035 -0.0873 8 6 1.3724 -4.2907 0.0315 9 7 1.3008 -4.7346 1.4300 10 7 1.6529 -2.1382 1.1694 11 6 0.9758 -2.7222 2.1779 12 8 0.0021 -3.4127 1.9378 13 6 1.4107 -2.5266 3.5602 14 16 3.0541 -2.7352 4.1447 15 6 2.5938 -2.3094 5.7836 16 6 1.2976 -2.0337 5.8657 17 6 0.5839 -2.1460 4.6180 18 6 -0.7940 -1.9044 4.4831 19 1 -1.2023 -1.6288 3.5220 20 6 -1.6392 -2.0212 5.5969 21 7 -1.1441 -2.3467 6.7613 22 14 -3.4723 -1.7114 5.4152 23 1 -3.7776 -1.3611 4.0047 24 1 -4.2213 -2.9365 5.7937 25 1 -3.8753 -0.5908 6.3023 26 6 2.0371 -0.7222 1.2470 27 1 3.1229 -0.6404 1.2971 28 6 1.4141 -0.0891 2.4929 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5149 0.8893 31 1 -0.3632 0.5128 -0.8906 32 1 3.1306 -0.7435 -1.2357 33 1 1.6982 -0.1955 -2.1388 34 1 1.8488 -2.6624 -2.1673 35 1 0.4140 -2.1364 -1.2542 36 1 0.3669 -4.2441 -0.3869 37 1 1.9728 -4.9957 -0.5433 38 1 0.7366 -5.5665 1.5167 39 1 2.2237 -4.8824 1.8101 40 1 3.2777 -2.2752 6.6188 41 1 0.8176 -1.7498 6.7906 42 1 -1.7282 -2.4271 7.5315 43 1 2.0154 -0.3395 3.3669 44 1 1.3812 0.9936 2.3724 45 1 0.4019 -0.4708 2.6268 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576652527.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:36 Heat of formation + Delta-G solvation = 31.337987 kcal Electronic energy + Delta-G solvation = -27599.924927 eV Core-core repulsion = 24131.235032 eV Total energy + Delta-G solvation = -3468.689895 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.41275 -38.47336 -37.70529 -35.81584 -34.62579 -33.92186 -32.75615 -30.60601 -28.98097 -28.22977 -27.65169 -25.43919 -24.23595 -23.21387 -22.14215 -21.15567 -20.46794 -19.71742 -17.96017 -17.43568 -17.08002 -17.02617 -16.48954 -16.33000 -15.67279 -15.40511 -15.30117 -14.94891 -14.69150 -14.46135 -14.23877 -14.00044 -13.79554 -13.56506 -13.36534 -13.22713 -12.95253 -12.81724 -12.72340 -12.50726 -12.39622 -12.31070 -12.21605 -12.00602 -11.85821 -11.58800 -11.45877 -11.23328 -11.20012 -11.14893 -10.89516 -9.88229 -9.07565 -8.92580 -8.70991 -8.55182 -8.16069 -6.18735 0.63487 1.35114 1.36367 1.48109 1.50192 1.88041 2.20449 2.28506 2.64151 2.86982 3.49648 3.73572 3.88124 3.98458 4.06402 4.13467 4.28047 4.43185 4.49995 4.52711 4.61232 4.66047 4.76047 4.81891 4.86248 4.88618 4.92892 5.10760 5.11706 5.13038 5.24190 5.27022 5.35788 5.41641 5.45319 5.55095 5.62168 5.64333 5.69117 5.84286 6.09207 6.25402 6.53367 6.57362 6.64798 6.90704 6.99597 7.32241 8.25728 8.35930 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013205 B = 0.006130 C = 0.005420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.841132 B = 4566.851794 C = 5164.599607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.098 4.098 3 H 0.093 0.907 4 C -0.103 4.103 5 C -0.125 4.125 6 C 0.156 3.844 7 H 0.066 0.934 8 C 0.065 3.935 9 N -0.817 5.817 10 N -0.653 5.653 11 C 0.672 3.328 12 O -0.511 6.511 13 C -0.382 4.382 14 S 0.020 5.980 15 C -0.228 4.228 16 C -0.126 4.126 17 C 0.098 3.902 18 C -0.435 4.435 19 H 0.055 0.945 20 C 0.037 3.963 21 N -0.828 5.828 22 Si 0.975 3.025 23 H -0.272 1.272 24 H -0.269 1.269 25 H -0.256 1.256 26 C 0.168 3.832 27 H 0.062 0.938 28 C -0.148 4.148 29 H 0.035 0.965 30 H 0.037 0.963 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.044 0.956 38 H 0.335 0.665 39 H 0.312 0.688 40 H 0.160 0.840 41 H 0.139 0.861 42 H 0.287 0.713 43 H 0.052 0.948 44 H 0.065 0.935 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.028 3.008 -11.559 13.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.117 4.117 3 H 0.111 0.889 4 C -0.140 4.140 5 C -0.163 4.163 6 C 0.052 3.948 7 H 0.084 0.916 8 C -0.066 4.066 9 N -0.351 5.351 10 N -0.393 5.393 11 C 0.464 3.536 12 O -0.384 6.384 13 C -0.502 4.502 14 S 0.278 5.722 15 C -0.362 4.362 16 C -0.159 4.159 17 C 0.088 3.912 18 C -0.468 4.468 19 H 0.074 0.926 20 C -0.177 4.177 21 N -0.456 5.456 22 Si 0.797 3.203 23 H -0.196 1.196 24 H -0.194 1.194 25 H -0.180 1.180 26 C 0.065 3.935 27 H 0.080 0.920 28 C -0.206 4.206 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.150 0.850 39 H 0.127 0.873 40 H 0.177 0.823 41 H 0.156 0.844 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.412 2.847 -11.946 14.344 hybrid contribution -1.759 -0.671 0.914 2.093 sum 5.653 2.176 -11.033 12.586 Atomic orbital electron populations 1.21769 0.96156 1.00790 1.00874 1.21489 0.95562 0.99780 0.94906 0.88919 1.21463 1.00805 0.94619 0.97107 1.21971 1.00630 0.96662 0.97076 1.21134 0.97560 0.90514 0.85632 0.91626 1.21926 0.99986 0.95053 0.89608 1.61352 1.16220 1.39413 1.18099 1.47445 1.63878 1.10124 1.17867 1.15672 0.80438 0.75269 0.82245 1.90465 1.26667 1.36720 1.84556 1.23591 0.95438 1.32994 0.98178 1.82554 1.11367 1.76649 1.01592 1.25350 0.99556 1.10673 1.00598 1.21849 0.92679 1.01442 0.99968 1.18085 0.93296 0.90368 0.89493 1.19131 0.92191 1.40523 0.95001 0.92641 1.26638 1.05199 0.91899 0.93990 1.69616 1.38802 1.36069 1.01079 0.85257 0.76985 0.78996 0.79078 1.19593 1.19395 1.18044 1.20772 0.97616 0.80529 0.94616 0.91988 1.22176 1.00879 0.99724 0.97784 0.94572 0.94383 0.91671 0.90788 0.90278 0.89497 0.92974 0.92246 0.93755 0.85049 0.87350 0.82255 0.84367 0.90176 0.92902 0.91612 0.94140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.10 8.27 71.98 0.60 -3.50 16 2 C -0.10 -2.50 2.70 -10.86 -0.03 -2.53 16 3 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 4 C -0.10 -2.10 5.43 30.62 0.17 -1.93 16 5 C -0.12 -2.93 4.93 30.67 0.15 -2.78 16 6 C 0.16 4.51 3.40 44.98 0.15 4.67 16 7 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 8 C 0.07 1.99 5.93 86.30 0.51 2.51 16 9 N -0.82 -29.90 3.76 -186.71 -0.70 -30.60 16 10 N -0.65 -23.28 2.39 -777.22 -1.86 -25.14 16 11 C 0.67 29.96 2.98 86.32 0.26 30.22 16 12 O -0.51 -26.08 13.11 -4.54 -0.06 -26.14 16 13 C -0.38 -18.12 3.45 24.66 0.08 -18.03 16 14 S 0.02 0.84 22.61 -56.49 -1.28 -0.44 16 15 C -0.23 -9.85 11.07 66.64 0.74 -9.11 16 16 C -0.13 -6.32 9.10 22.60 0.21 -6.12 16 17 C 0.10 5.21 4.68 -20.90 -0.10 5.11 16 18 C -0.44 -24.11 7.95 23.33 0.19 -23.93 16 19 H 0.06 3.24 6.97 -2.91 -0.02 3.22 16 20 C 0.04 1.93 5.46 85.37 0.47 2.40 16 21 N -0.83 -42.74 10.47 21.89 0.23 -42.51 16 22 Si 0.97 40.92 29.56 68.60 2.03 42.95 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 24 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 25 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 26 C 0.17 5.38 3.08 44.83 0.14 5.52 16 27 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 28 C -0.15 -5.58 6.36 71.98 0.46 -5.12 16 29 H 0.04 1.28 5.97 -2.39 -0.01 1.26 16 30 H 0.04 1.24 6.80 -2.39 -0.02 1.22 16 31 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.05 1.46 6.19 -2.39 -0.01 1.44 16 36 H 0.06 1.99 7.67 -2.39 -0.02 1.97 16 37 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.34 12.09 9.06 -89.70 -0.81 11.28 16 39 H 0.31 11.11 9.01 -89.70 -0.81 10.30 16 40 H 0.16 5.83 8.06 -2.91 -0.02 5.80 16 41 H 0.14 7.21 6.04 -2.91 -0.02 7.19 16 42 H 0.29 13.43 8.29 -92.71 -0.77 12.67 16 43 H 0.05 2.19 5.90 -2.39 -0.01 2.18 16 44 H 0.07 2.12 7.98 -2.39 -0.02 2.10 16 45 H 0.04 1.83 4.57 -2.38 -0.01 1.81 16 Total: -1.00 -62.00 345.67 1.75 -60.25 By element: Atomic # 1 Polarization: 44.87 SS G_CDS: -0.59 Total: 44.27 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: 3.98 Total: -22.64 kcal Atomic # 7 Polarization: -95.92 SS G_CDS: -2.33 Total: -98.25 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.06 Total: -26.14 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.95 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -1.28 Total: -0.44 kcal Total: -62.00 1.75 -60.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576652527.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.590 kcal (2) G-P(sol) polarization free energy of solvation -62.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds