Wall clock time and date at job start Tue Mar 31 2020 14:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08993 * 109.52699 * 2 1 4 4 C 1.53047 * 109.49693 * 239.92056 * 2 1 3 5 5 C 1.53043 * 109.53846 * 301.41262 * 4 2 1 6 6 C 1.53192 * 109.31325 * 298.63787 * 5 4 2 7 7 H 1.09002 * 109.70284 * 294.77556 * 6 5 4 8 8 C 1.52999 * 109.58620 * 174.42155 * 6 5 4 9 9 N 1.46903 * 109.47103 * 167.09148 * 8 6 5 10 10 N 1.46924 * 108.77596 * 54.63222 * 6 5 4 11 11 C 1.34784 * 120.62959 * 126.37424 * 10 6 5 12 12 O 1.21761 * 119.99681 * 352.81904 * 11 10 6 13 13 C 1.46236 * 120.00069 * 172.81829 * 11 10 6 14 14 S 1.75668 * 125.22721 * 305.25436 * 13 11 10 15 15 C 1.75470 * 92.09360 * 179.97438 * 14 13 11 16 16 C 1.32769 * 111.35638 * 0.32362 * 15 14 13 17 17 C 1.39541 * 125.22732 * 125.56022 * 13 11 10 18 18 C 1.40538 * 123.71419 * 359.97438 * 17 13 11 19 19 H 1.08001 * 120.00104 * 340.22156 * 18 17 13 20 20 C 1.40309 * 119.99864 * 160.22483 * 18 17 13 21 21 N 1.30644 * 119.99866 * 350.45250 * 20 18 17 22 22 Si 1.86799 * 120.00046 * 170.46025 * 20 18 17 23 23 H 1.48498 * 109.47520 * 94.95677 * 22 20 18 24 24 H 1.48501 * 109.46905 * 214.96226 * 22 20 18 25 25 H 1.48499 * 109.47043 * 334.95877 * 22 20 18 26 26 C 1.46925 * 118.73939 * 306.38854 * 10 6 5 27 27 H 1.09006 * 109.58318 * 173.54279 * 26 10 6 28 28 C 1.52997 * 109.59149 * 293.82559 * 26 10 6 29 29 H 1.09003 * 109.47096 * 299.91404 * 1 2 3 30 30 H 1.09002 * 109.47393 * 59.91916 * 1 2 3 31 31 H 1.09006 * 109.47441 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46093 * 181.39392 * 4 2 1 33 33 H 1.08996 * 109.44687 * 61.42446 * 4 2 1 34 34 H 1.08999 * 109.49766 * 178.68107 * 5 4 2 35 35 H 1.09008 * 109.49613 * 58.58348 * 5 4 2 36 36 H 1.08994 * 109.47217 * 287.08885 * 8 6 5 37 37 H 1.09004 * 109.46862 * 47.09437 * 8 6 5 38 38 H 1.00897 * 111.00023 * 183.20910 * 9 8 6 39 39 H 1.00907 * 110.99886 * 307.16195 * 9 8 6 40 40 H 1.07998 * 124.32517 * 180.08546 * 15 14 13 41 41 H 1.08004 * 122.78118 * 179.72874 * 16 15 14 42 42 H 0.96999 * 119.99516 * 180.02562 * 21 20 18 43 43 H 1.09002 * 109.47021 * 59.99477 * 28 26 10 44 44 H 1.09001 * 109.46880 * 300.00128 * 28 26 10 45 45 H 1.08996 * 109.47244 * 180.02562 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0272 0.0000 4 6 2.0407 -0.7231 -1.2484 5 6 1.5029 -2.1558 -1.2661 6 6 2.0139 -2.9041 -0.0309 7 1 3.0977 -3.0065 -0.0855 8 6 1.3702 -4.2906 0.0316 9 7 2.0776 -5.1149 1.0206 10 7 1.6515 -2.1382 1.1695 11 6 0.9739 -2.7219 2.1779 12 8 0.5425 -3.8530 2.0469 13 6 0.7570 -1.9969 3.4291 14 16 2.0199 -1.2749 4.4140 15 6 0.8573 -0.6924 5.5921 16 6 -0.3819 -1.0314 5.2570 17 6 -0.4844 -1.7773 4.0274 18 6 -1.7005 -2.2339 3.4909 19 1 -1.7648 -2.4962 2.4452 20 6 -2.8311 -2.3488 4.3139 21 7 -2.7136 -2.2132 5.6079 22 14 -4.5042 -2.6960 3.5592 23 1 -4.7688 -4.1568 3.5924 24 1 -5.5534 -1.9852 4.3333 25 1 -4.5205 -2.2219 2.1521 26 6 2.0413 -0.7239 1.2495 27 1 1.6028 -0.2739 2.1403 28 6 3.5659 -0.6151 1.3175 29 1 -0.3633 0.5125 0.8908 30 1 -0.3634 0.5151 -0.8893 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1305 -0.7444 -1.2354 33 1 1.6984 -0.1957 -2.1388 34 1 1.8480 -2.6628 -2.1672 35 1 0.4131 -2.1355 -1.2541 36 1 0.3241 -4.1928 0.3217 37 1 1.4328 -4.7647 -0.9480 38 1 1.7048 -6.0521 1.0433 39 1 3.0702 -5.1248 0.8394 40 1 1.1169 -0.1331 6.4788 41 1 -1.2419 -0.7700 5.8559 42 1 -3.4951 -2.2931 6.1768 43 1 4.0022 -1.0611 0.4237 44 1 3.9287 -1.1414 2.2003 45 1 3.8529 0.4347 1.3772 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576652528.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:41 Heat of formation + Delta-G solvation = 12.239955 kcal Electronic energy + Delta-G solvation = -27248.829333 eV Core-core repulsion = 23779.311286 eV Total energy + Delta-G solvation = -3469.518047 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.03377 -37.05219 -35.94378 -34.34934 -32.88075 -32.57047 -31.24491 -29.15530 -28.73547 -26.72158 -25.63146 -23.53048 -22.75393 -22.26875 -21.22201 -19.73872 -18.80611 -18.18268 -16.63762 -15.76067 -15.42672 -15.18528 -15.06456 -14.79224 -14.45858 -14.22289 -13.94666 -13.60356 -13.39601 -12.69779 -12.56840 -12.50869 -12.34249 -12.26639 -11.93203 -11.87168 -11.59485 -11.50708 -11.37375 -11.19140 -11.00905 -10.95782 -10.79394 -10.64575 -10.40443 -10.28043 -10.05113 -10.00461 -9.87453 -9.49434 -9.08671 -7.95531 -7.84757 -7.49789 -7.28685 -6.97889 -6.85821 -4.37808 2.38871 3.00366 3.03761 3.09329 3.18828 3.60274 3.87612 3.92164 4.02325 4.53187 4.90397 4.94601 5.09724 5.21634 5.34388 5.43206 5.52456 5.59856 5.69551 5.76288 5.83520 5.92460 5.96968 5.98481 6.02655 6.12062 6.12711 6.16083 6.32652 6.37619 6.40893 6.54471 6.62408 6.72033 6.73396 6.87122 6.96207 7.31264 7.34419 7.50367 7.62139 7.84469 7.87626 8.06002 8.35768 8.60261 8.70837 8.84067 9.73721 10.04811 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012226 B = 0.006050 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.569953 B = 4627.292510 C = 5252.108046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 H 0.072 0.928 4 C -0.111 4.111 5 C -0.131 4.131 6 C 0.155 3.845 7 H 0.053 0.947 8 C 0.069 3.931 9 N -0.814 5.814 10 N -0.607 5.607 11 C 0.622 3.378 12 O -0.504 6.504 13 C -0.418 4.418 14 S -0.026 6.026 15 C -0.225 4.225 16 C -0.099 4.099 17 C 0.136 3.864 18 C -0.402 4.402 19 H 0.082 0.918 20 C 0.074 3.926 21 N -0.792 5.792 22 Si 0.917 3.083 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.259 1.259 26 C 0.142 3.858 27 H 0.109 0.891 28 C -0.158 4.158 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.110 0.890 37 H -0.003 1.003 38 H 0.334 0.666 39 H 0.314 0.686 40 H 0.134 0.866 41 H 0.149 0.851 42 H 0.284 0.716 43 H 0.049 0.951 44 H 0.059 0.941 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.189 3.749 -9.401 11.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 H 0.090 0.910 4 C -0.148 4.148 5 C -0.170 4.170 6 C 0.050 3.950 7 H 0.071 0.929 8 C -0.061 4.061 9 N -0.343 5.343 10 N -0.343 5.343 11 C 0.414 3.586 12 O -0.380 6.380 13 C -0.537 4.537 14 S 0.231 5.769 15 C -0.359 4.359 16 C -0.131 4.131 17 C 0.125 3.875 18 C -0.434 4.434 19 H 0.100 0.900 20 C -0.145 4.145 21 N -0.418 5.418 22 Si 0.741 3.259 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.183 1.183 26 C 0.037 3.963 27 H 0.126 0.874 28 C -0.216 4.216 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.128 0.872 37 H 0.015 0.985 38 H 0.146 0.854 39 H 0.125 0.875 40 H 0.151 0.849 41 H 0.166 0.834 42 H 0.095 0.905 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.061 3.717 -8.790 11.872 hybrid contribution -1.775 -0.710 -0.803 2.074 sum 5.285 3.007 -9.593 11.358 Atomic orbital electron populations 1.21798 0.94676 1.02615 1.00974 1.21479 0.96615 0.98768 0.95087 0.91001 1.21537 1.00195 0.95536 0.97576 1.21977 1.01963 0.95866 0.97221 1.20986 0.97459 0.91336 0.85192 0.92916 1.22172 1.02729 0.91071 0.90113 1.58722 1.05120 1.16562 1.53887 1.47948 1.58988 1.09933 1.17459 1.16836 0.75961 0.84509 0.81329 1.90675 1.48512 1.17706 1.81063 1.22713 0.94509 1.29605 1.06843 1.82905 1.13279 1.60935 1.19787 1.25026 0.97239 1.09595 1.04062 1.21826 0.96465 0.97362 0.97458 1.17782 0.91354 0.89181 0.89147 1.19258 0.92281 1.34697 0.97144 0.89990 1.26093 1.01637 0.92290 0.94486 1.69632 1.32407 1.35140 1.04586 0.86135 0.79929 0.79472 0.80346 1.19246 1.19986 1.18284 1.21256 0.94038 0.82242 0.98771 0.87369 1.22147 0.96513 1.01316 1.01660 0.92380 0.93665 0.91908 0.92062 0.92407 0.92025 0.91007 0.87184 0.98544 0.85379 0.87509 0.84862 0.83369 0.90527 0.93181 0.92146 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 8.70 37.15 0.32 -1.88 16 2 C -0.10 -1.40 2.68 -90.50 -0.24 -1.64 16 3 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 4 C -0.11 -1.35 5.22 -26.68 -0.14 -1.49 16 5 C -0.13 -1.76 4.99 -26.61 -0.13 -1.90 16 6 C 0.15 2.47 2.65 -67.60 -0.18 2.29 16 7 H 0.05 0.81 7.37 -51.93 -0.38 0.43 16 8 C 0.07 1.18 5.42 -3.82 -0.02 1.16 16 9 N -0.81 -14.17 7.28 -10.37 -0.08 -14.25 16 10 N -0.61 -11.24 2.12 -159.40 -0.34 -11.58 16 11 C 0.62 14.41 6.64 -13.04 -0.09 14.32 16 12 O -0.50 -12.74 11.11 5.13 0.06 -12.68 16 13 C -0.42 -10.25 4.88 -35.89 -0.17 -10.43 16 14 S -0.03 -0.56 21.16 -107.50 -2.27 -2.83 16 15 C -0.23 -4.97 11.07 28.86 0.32 -4.65 16 16 C -0.10 -2.42 9.08 -39.12 -0.36 -2.77 16 17 C 0.14 3.56 5.72 -106.21 -0.61 2.96 16 18 C -0.40 -10.63 8.73 -37.94 -0.33 -10.96 16 19 H 0.08 2.22 7.57 -52.49 -0.40 1.82 16 20 C 0.07 1.83 5.41 -17.28 -0.09 1.74 16 21 N -0.79 -19.64 10.60 55.57 0.59 -19.05 16 22 Si 0.92 18.73 29.57 -169.99 -5.03 13.71 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 24 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 25 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 26 C 0.14 2.34 2.04 -67.60 -0.14 2.20 16 27 H 0.11 2.08 5.40 -51.93 -0.28 1.80 16 28 C -0.16 -2.27 9.03 37.16 0.34 -1.93 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 1.10 5.97 -51.93 -0.31 0.79 16 32 H 0.06 0.70 6.49 -51.93 -0.34 0.37 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 1.06 6.33 -51.92 -0.33 0.73 16 36 H 0.11 2.27 5.91 -52.26 -0.31 1.97 16 37 H 0.00 -0.05 8.08 -51.93 -0.42 -0.47 16 38 H 0.33 5.43 9.08 -39.29 -0.36 5.07 16 39 H 0.31 4.77 8.86 -39.29 -0.35 4.42 16 40 H 0.13 2.53 8.06 -52.49 -0.42 2.11 16 41 H 0.15 3.67 6.12 -52.48 -0.32 3.35 16 42 H 0.28 6.36 8.29 -40.82 -0.34 6.02 16 43 H 0.05 0.66 5.73 -51.93 -0.30 0.36 16 44 H 0.06 0.97 7.81 -51.93 -0.41 0.56 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 351.33 15.07 5.29 5.29 Total: -1.00 -28.11 351.33 -9.88 -37.99 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -6.59 Total: 16.38 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -1.52 Total: -12.99 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: 0.18 Total: -44.87 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.06 Total: -12.68 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.71 kcal Atomic # 16 Polarization: -0.56 SS G_CDS: -2.27 Total: -2.83 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.11 -9.88 -37.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576652528.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.232 kcal (2) G-P(sol) polarization free energy of solvation -28.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds