Wall clock time and date at job start Tue Mar 31 2020 14:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.49408 * 2 1 4 4 C 1.53040 * 109.52245 * 239.91589 * 2 1 3 5 5 C 1.53048 * 109.53630 * 178.66586 * 4 2 1 6 6 C 1.52766 * 109.37791 * 61.24201 * 5 4 2 7 7 H 1.08993 * 109.43405 * 65.42969 * 6 5 4 8 8 C 1.53005 * 109.50394 * 185.70549 * 6 5 4 9 9 N 1.46902 * 109.47139 * 301.71238 * 8 6 5 10 10 N 1.46921 * 109.01093 * 305.58524 * 6 5 4 11 11 C 1.34773 * 120.63079 * 233.58858 * 10 6 5 12 12 O 1.21758 * 120.00374 * 354.48562 * 11 10 6 13 13 C 1.46240 * 120.00193 * 174.48468 * 11 10 6 14 14 S 1.75666 * 125.22579 * 315.62882 * 13 11 10 15 15 C 1.75478 * 92.09188 * 179.97438 * 14 13 11 16 16 C 1.32767 * 111.36145 * 0.26401 * 15 14 13 17 17 C 1.39540 * 125.22732 * 135.59136 * 13 11 10 18 18 C 1.40543 * 123.71816 * 0.02562 * 17 13 11 19 19 H 1.07995 * 119.99654 * 22.01581 * 18 17 13 20 20 C 1.40302 * 119.99899 * 202.01156 * 18 17 13 21 21 N 1.30644 * 120.00488 * 14.28105 * 20 18 17 22 22 Si 1.86803 * 119.99647 * 194.27690 * 20 18 17 23 23 H 1.48495 * 109.47251 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46852 * 120.00582 * 22 20 18 25 25 H 1.48504 * 109.46793 * 240.00188 * 22 20 18 26 26 C 1.46933 * 118.73670 * 53.31458 * 10 6 5 27 27 H 1.09000 * 109.58491 * 186.71287 * 26 10 6 28 28 C 1.52994 * 109.58629 * 66.43095 * 26 10 6 29 29 H 1.08997 * 109.46770 * 299.93380 * 1 2 3 30 30 H 1.08995 * 109.47212 * 59.93867 * 1 2 3 31 31 H 1.09001 * 109.46771 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46063 * 298.68640 * 4 2 1 33 33 H 1.09003 * 109.46105 * 58.65094 * 4 2 1 34 34 H 1.08996 * 109.49627 * 181.31700 * 5 4 2 35 35 H 1.08993 * 109.49756 * 301.38472 * 5 4 2 36 36 H 1.08998 * 109.47124 * 61.71452 * 8 6 5 37 37 H 1.09001 * 109.46811 * 181.71727 * 8 6 5 38 38 H 1.00897 * 110.99553 * 181.91407 * 9 8 6 39 39 H 1.00893 * 111.00281 * 305.86863 * 9 8 6 40 40 H 1.07994 * 124.32127 * 179.97438 * 15 14 13 41 41 H 1.07991 * 122.78590 * 179.73204 * 16 15 14 42 42 H 0.96997 * 120.00357 * 179.97438 * 21 20 18 43 43 H 1.08999 * 109.47672 * 59.99633 * 28 26 10 44 44 H 1.08995 * 109.46867 * 180.02562 * 28 26 10 45 45 H 1.09004 * 109.46871 * 300.00000 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0415 -0.7230 -1.2481 5 6 3.5716 -0.6942 -1.2654 6 6 4.1062 -1.4204 -0.0323 7 1 3.8425 -2.4764 -0.0905 8 6 5.6277 -1.2714 0.0287 9 7 6.2228 -1.8174 -1.1984 10 7 3.5047 -0.8281 1.1702 11 6 4.2808 -0.3841 2.1787 12 8 5.4848 -0.5621 2.1442 13 6 3.6768 0.3115 3.3144 14 16 2.4476 1.5613 3.2000 15 6 2.3821 1.7465 4.9438 16 6 3.2322 0.9261 5.5495 17 6 3.9879 0.0840 4.6556 18 6 4.9372 -0.8581 5.0873 19 1 5.7108 -1.1933 4.4124 20 6 4.8797 -1.3632 6.3950 21 7 3.8062 -1.1844 7.1178 22 14 6.3383 -2.2913 7.1026 23 1 7.4222 -2.3564 6.0897 24 1 6.8335 -1.5869 8.3124 25 1 5.9186 -3.6681 7.4684 26 6 2.0413 -0.7235 1.2498 27 1 1.7632 -0.1598 2.1403 28 6 1.4299 -2.1243 1.3179 29 1 -0.3633 0.5128 0.8906 30 1 -0.3633 0.5148 -0.8894 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6979 -1.7573 -1.2350 33 1 1.6589 -0.2247 -2.1389 34 1 3.9346 -1.1889 -2.1663 35 1 3.9161 0.3397 -1.2540 36 1 5.8861 -0.2164 0.1196 37 1 6.0117 -1.8153 0.8918 38 1 7.2296 -1.7591 -1.1689 39 1 5.9200 -2.7669 -1.3557 40 1 1.7364 2.4426 5.4583 41 1 3.3459 0.8900 6.6228 42 1 3.7664 -1.5339 8.0218 43 1 1.8046 -2.6419 2.2009 44 1 0.3444 -2.0445 1.3764 45 1 1.7050 -2.6846 0.4242 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576652529.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:44 Heat of formation + Delta-G solvation = -10.569299 kcal Electronic energy + Delta-G solvation = -26742.102528 eV Core-core repulsion = 23271.595397 eV Total energy + Delta-G solvation = -3470.507131 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.01284 -37.27726 -36.04168 -34.81823 -33.07558 -32.71073 -31.51313 -29.10919 -28.32251 -27.14398 -25.73170 -23.75075 -22.87497 -22.31271 -21.06802 -19.72876 -18.90940 -18.39360 -16.78710 -16.08123 -15.78180 -15.41589 -15.02129 -14.70781 -14.65113 -14.24382 -13.92730 -13.67278 -13.37365 -13.18277 -12.70867 -12.51577 -12.37098 -12.19950 -12.15021 -11.90647 -11.76817 -11.58986 -11.46777 -11.34177 -11.11815 -10.93231 -10.83856 -10.63208 -10.40153 -10.30054 -10.23961 -10.13058 -9.78342 -9.67463 -9.20053 -8.77489 -7.89176 -7.72810 -7.48665 -7.08855 -7.02751 -4.54370 2.19958 2.90163 2.96736 3.05310 3.07753 3.44961 3.75990 3.79744 3.85380 4.33350 4.93829 5.02544 5.06654 5.13971 5.21762 5.28218 5.54267 5.64574 5.66685 5.72557 5.84305 5.89207 5.93860 6.01284 6.04875 6.09050 6.21211 6.28381 6.31280 6.40495 6.47616 6.48796 6.59552 6.64846 6.69654 6.81984 6.83426 7.11202 7.18834 7.35702 7.43179 7.53771 7.71742 7.71998 8.27435 8.40445 8.56345 8.70659 9.44099 9.86062 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012925 B = 0.005591 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.832987 B = 5007.250774 C = 6288.538081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 H 0.071 0.929 4 C -0.116 4.116 5 C -0.118 4.118 6 C 0.154 3.846 7 H 0.055 0.945 8 C 0.067 3.933 9 N -0.860 5.860 10 N -0.612 5.612 11 C 0.622 3.378 12 O -0.559 6.559 13 C -0.436 4.436 14 S -0.021 6.021 15 C -0.220 4.220 16 C -0.095 4.095 17 C 0.144 3.856 18 C -0.401 4.401 19 H 0.100 0.900 20 C 0.072 3.928 21 N -0.780 5.780 22 Si 0.917 3.083 23 H -0.254 1.254 24 H -0.269 1.269 25 H -0.271 1.271 26 C 0.130 3.870 27 H 0.121 0.879 28 C -0.161 4.161 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.338 0.662 39 H 0.329 0.671 40 H 0.136 0.864 41 H 0.141 0.859 42 H 0.287 0.713 43 H 0.058 0.942 44 H 0.063 0.937 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.625 -1.337 -8.523 9.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 H 0.089 0.911 4 C -0.154 4.154 5 C -0.156 4.156 6 C 0.050 3.950 7 H 0.073 0.927 8 C -0.062 4.062 9 N -0.391 5.391 10 N -0.346 5.346 11 C 0.417 3.583 12 O -0.440 6.440 13 C -0.554 4.554 14 S 0.236 5.764 15 C -0.354 4.354 16 C -0.127 4.127 17 C 0.134 3.866 18 C -0.433 4.433 19 H 0.118 0.882 20 C -0.149 4.149 21 N -0.404 5.404 22 Si 0.741 3.259 23 H -0.178 1.178 24 H -0.193 1.193 25 H -0.196 1.196 26 C 0.025 3.975 27 H 0.138 0.862 28 C -0.219 4.219 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.150 0.850 39 H 0.140 0.860 40 H 0.154 0.846 41 H 0.158 0.842 42 H 0.098 0.902 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.233 -0.177 -9.797 11.108 hybrid contribution 1.427 -1.722 2.273 3.188 sum -3.805 -1.898 -7.525 8.643 Atomic orbital electron populations 1.21852 0.95017 1.01793 1.01620 1.21475 0.95463 0.99882 0.95082 0.91096 1.21652 0.95948 1.00469 0.97281 1.21764 0.94623 1.01216 0.97993 1.20901 0.93240 0.95921 0.84967 0.92748 1.22461 0.92442 1.01830 0.89498 1.58894 1.13239 1.25862 1.41096 1.48064 1.06099 1.62790 1.17632 1.16966 0.85179 0.76273 0.79883 1.90641 1.14969 1.60425 1.77965 1.22515 1.18231 1.18665 0.96033 1.82882 1.44880 1.43615 1.05053 1.25072 1.06591 1.06520 0.97218 1.21629 0.95878 0.94273 1.00961 1.17815 0.89790 0.90787 0.88249 1.19728 1.10046 1.17451 0.96041 0.88159 1.26244 0.96820 0.95170 0.96661 1.69692 1.26316 1.34341 1.10081 0.86082 0.81383 0.79011 0.79474 1.17767 1.19347 1.19634 1.21648 0.79542 0.96520 0.99763 0.86187 1.22181 1.00516 0.97383 1.01789 0.92240 0.93035 0.92425 0.92048 0.92447 0.90632 0.92125 0.90419 0.91639 0.84989 0.86041 0.84576 0.84160 0.90240 0.92323 0.91802 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.71 37.16 0.32 -1.41 16 2 C -0.10 -1.43 2.65 -90.50 -0.24 -1.67 16 3 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 4 C -0.12 -1.51 4.96 -26.69 -0.13 -1.65 16 5 C -0.12 -1.72 5.08 -26.83 -0.14 -1.86 16 6 C 0.15 2.61 2.71 -67.82 -0.18 2.42 16 7 H 0.05 0.89 7.52 -51.93 -0.39 0.50 16 8 C 0.07 1.19 4.67 -3.82 -0.02 1.17 16 9 N -0.86 -11.96 8.91 -10.37 -0.09 -12.05 16 10 N -0.61 -11.93 2.68 -159.65 -0.43 -12.35 16 11 C 0.62 14.77 7.08 -13.05 -0.09 14.68 16 12 O -0.56 -14.32 11.22 5.14 0.06 -14.26 16 13 C -0.44 -10.72 5.47 -35.88 -0.20 -10.91 16 14 S -0.02 -0.44 20.22 -107.50 -2.17 -2.61 16 15 C -0.22 -4.71 11.07 28.86 0.32 -4.39 16 16 C -0.10 -2.28 9.04 -39.12 -0.35 -2.64 16 17 C 0.14 3.76 5.67 -106.20 -0.60 3.16 16 18 C -0.40 -10.59 8.79 -37.94 -0.33 -10.92 16 19 H 0.10 2.79 6.60 -52.49 -0.35 2.44 16 20 C 0.07 1.74 5.34 -17.28 -0.09 1.64 16 21 N -0.78 -18.57 10.96 55.57 0.61 -17.96 16 22 Si 0.92 18.25 29.59 -169.99 -5.03 13.22 16 23 H -0.25 -5.22 7.11 56.52 0.40 -4.82 16 24 H -0.27 -5.16 7.11 56.52 0.40 -4.75 16 25 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 26 C 0.13 2.24 2.40 -67.60 -0.16 2.08 16 27 H 0.12 2.33 3.99 -31.65 -0.13 2.20 16 28 C -0.16 -2.47 8.51 37.15 0.32 -2.16 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.64 6.37 -51.93 -0.33 0.31 16 32 H 0.06 0.76 6.49 -51.93 -0.34 0.43 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 1.03 7.75 -51.93 -0.40 0.62 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 1.60 7.21 -51.93 -0.37 1.23 16 37 H 0.07 1.36 6.26 -51.93 -0.33 1.03 16 38 H 0.34 4.29 9.08 -39.29 -0.36 3.94 16 39 H 0.33 4.01 8.97 -39.30 -0.35 3.66 16 40 H 0.14 2.47 8.06 -52.49 -0.42 2.05 16 41 H 0.14 3.36 6.49 -52.49 -0.34 3.02 16 42 H 0.29 6.11 8.29 -40.82 -0.34 5.78 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.06 0.85 6.40 -51.93 -0.33 0.52 16 45 H 0.05 0.73 5.74 -51.93 -0.30 0.43 16 LS Contribution 351.12 15.07 5.29 5.29 Total: -1.00 -27.17 351.12 -9.76 -36.93 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: -6.41 Total: 16.25 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -1.58 Total: -12.45 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 0.09 Total: -42.37 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: 0.06 Total: -14.26 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Atomic # 16 Polarization: -0.44 SS G_CDS: -2.17 Total: -2.61 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -27.17 -9.76 -36.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576652529.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.358 kcal (2) G-P(sol) polarization free energy of solvation -27.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds