Wall clock time and date at job start Tue Mar 31 2020 14:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.99392 * 2 1 4 4 C 1.54317 * 109.88152 * 238.90302 * 2 1 3 5 5 H 1.09000 * 110.72533 * 336.93025 * 4 2 1 6 6 N 1.46507 * 110.71927 * 100.02667 * 4 2 1 7 7 C 1.34776 * 119.99855 * 202.55923 * 6 4 2 8 8 O 1.21281 * 120.00240 * 359.97438 * 7 6 4 9 9 C 1.50704 * 120.00112 * 179.97438 * 7 6 4 10 10 C 1.52996 * 109.47337 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47009 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.46890 * 179.97438 * 11 10 9 13 13 C 1.38424 * 122.54013 * 270.21728 * 12 11 10 14 14 C 1.33386 * 114.92331 * 180.20526 * 13 12 11 15 15 S 1.75891 * 109.59176 * 359.59299 * 14 13 12 16 16 C 1.33384 * 122.54036 * 89.97873 * 12 11 10 17 17 C 1.55157 * 103.10259 * 218.47336 * 4 2 1 18 18 C 1.54910 * 101.57741 * 35.41754 * 17 4 2 19 19 N 1.47310 * 110.06245 * 121.16860 * 2 1 3 20 20 C 1.36943 * 125.62120 * 298.32459 * 19 2 1 21 21 H 1.08002 * 119.99624 * 359.79816 * 20 19 2 22 22 C 1.38810 * 120.00031 * 179.79965 * 20 19 2 23 23 N 1.31615 * 120.00237 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99812 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47093 * 59.99803 * 24 22 20 26 26 H 1.48496 * 109.47209 * 179.97438 * 24 22 20 27 27 H 1.48507 * 109.47154 * 300.00138 * 24 22 20 28 28 H 1.09006 * 109.47098 * 181.09512 * 1 2 3 29 29 H 1.08999 * 109.47285 * 301.09513 * 1 2 3 30 30 H 1.08997 * 109.47471 * 61.10005 * 1 2 3 31 31 H 0.97000 * 120.00207 * 22.55464 * 6 4 2 32 32 H 1.08999 * 109.46684 * 59.99270 * 9 7 6 33 33 H 1.09000 * 109.46976 * 300.00220 * 9 7 6 34 34 H 1.08991 * 109.47692 * 59.99701 * 10 9 7 35 35 H 1.09003 * 109.46667 * 299.99780 * 10 9 7 36 36 H 1.09003 * 109.46978 * 59.99677 * 11 10 9 37 37 H 1.09000 * 109.47066 * 299.99915 * 11 10 9 38 38 H 1.08001 * 122.53888 * 0.04529 * 13 12 11 39 39 H 1.08002 * 125.20849 * 179.86592 * 14 13 12 40 40 H 1.08006 * 125.20125 * 0.02562 * 16 12 11 41 41 H 1.08997 * 111.00230 * 153.48817 * 17 4 2 42 42 H 1.09000 * 111.00763 * 277.34179 * 17 4 2 43 43 H 1.08998 * 110.36699 * 81.82914 * 18 17 4 44 44 H 1.08997 * 110.36661 * 204.03815 * 18 17 4 45 45 H 0.97003 * 120.00099 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2426 5 1 1.3040 -1.4437 -1.6201 6 7 2.4555 0.1961 -2.2875 7 6 2.5055 -0.2026 -3.5740 8 8 2.2193 -1.3442 -3.8667 9 6 2.9170 0.7703 -4.6489 10 6 2.8901 0.0694 -6.0086 11 6 3.3085 1.0569 -7.0997 12 6 3.2826 0.3664 -8.4390 13 6 4.3829 -0.2946 -8.9573 14 6 4.1928 -0.8483 -10.1559 15 16 2.5431 -0.5503 -10.6883 16 6 2.1963 0.3418 -9.2126 17 6 3.2870 -1.5176 -0.6958 18 6 2.8161 -1.8830 0.7341 19 7 2.0354 -0.7161 1.1840 20 6 1.8129 -0.3592 2.4872 21 1 1.2242 0.5174 2.7140 22 6 2.3439 -1.1241 3.5167 23 7 3.0616 -2.1921 3.2403 24 14 2.0409 -0.6368 5.2943 25 1 0.5808 -0.6348 5.5651 26 1 2.7096 -1.6096 6.1952 27 1 2.5909 0.7214 5.5359 28 1 -0.3633 -1.0275 0.0196 29 1 -0.3634 0.5307 0.8800 30 1 -0.3634 0.4966 -0.8996 31 1 2.6846 1.1091 -2.0534 32 1 3.9252 1.1312 -4.4455 33 1 2.2252 1.6125 -4.6609 34 1 1.8818 -0.2912 -6.2117 35 1 3.5817 -0.7730 -5.9968 36 1 4.3171 1.4171 -6.8965 37 1 2.6173 1.8996 -7.1116 38 1 5.3247 -0.3550 -8.4323 39 1 4.9365 -1.3994 -10.7122 40 1 1.2488 0.7999 -8.9701 41 1 3.4811 -2.4143 -1.2842 42 1 4.1664 -0.8744 -0.6651 43 1 2.1881 -2.7735 0.7107 44 1 3.6743 -2.0420 1.3870 45 1 3.4324 -2.7269 3.9597 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691689134.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:02 Heat of formation + Delta-G solvation = 6.700979 kcal Electronic energy + Delta-G solvation = -24137.555545 eV Core-core repulsion = 20667.797309 eV Total energy + Delta-G solvation = -3469.758235 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -39.74500 -38.69157 -37.55116 -34.29903 -33.94803 -32.02314 -30.45470 -30.24606 -28.73741 -27.54693 -24.86693 -23.99668 -23.54603 -21.91023 -20.42651 -20.10369 -19.50216 -18.96413 -17.89333 -16.84853 -16.68480 -15.88915 -15.86063 -15.31111 -14.73074 -14.18325 -13.95703 -13.83918 -13.74389 -13.38904 -13.20671 -12.97468 -12.75634 -12.65571 -12.15152 -12.09200 -11.85933 -11.77186 -11.58443 -11.56339 -11.14452 -10.97293 -10.85238 -10.82970 -10.82174 -10.52675 -10.39876 -10.12597 -9.75807 -9.63126 -9.49549 -9.06597 -8.67646 -8.62682 -8.57243 -6.88076 -5.65695 -3.08709 0.74660 1.40585 1.72595 2.43209 2.85535 3.38765 3.40918 3.44660 3.46269 4.47349 4.54981 4.65021 4.78455 4.85552 4.98047 5.17507 5.19721 5.28040 5.34129 5.42108 5.45791 5.53003 5.54608 5.55656 5.64437 5.75439 5.84041 5.92088 6.12327 6.13788 6.21851 6.26134 6.26814 6.31529 6.37322 6.55532 6.61972 6.72661 6.87576 7.12829 7.52030 7.61289 7.78372 7.85162 8.34231 8.47968 9.20105 9.80878 10.45109 11.37474 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.040723 B = 0.001877 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.403979 B =14913.355719 C =15138.571390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.154 3.846 3 H 0.036 0.964 4 C 0.134 3.866 5 H 0.091 0.909 6 N -0.718 5.718 7 C 0.509 3.491 8 O -0.545 6.545 9 C -0.141 4.141 10 C -0.097 4.097 11 C -0.062 4.062 12 C -0.096 4.096 13 C -0.129 4.129 14 C -0.212 4.212 15 S 0.082 5.918 16 C -0.211 4.211 17 C -0.152 4.152 18 C 0.153 3.847 19 N -0.595 5.595 20 C -0.221 4.221 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.921 5.921 24 Si 0.915 3.085 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.285 1.285 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.038 0.962 31 H 0.397 0.603 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.141 0.859 39 H 0.163 0.837 40 H 0.163 0.837 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.013 0.987 44 H 0.109 0.891 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.672 7.858 -25.004 26.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.046 3.954 3 H 0.054 0.946 4 C 0.030 3.970 5 H 0.109 0.891 6 N -0.368 5.368 7 C 0.295 3.705 8 O -0.422 6.422 9 C -0.181 4.181 10 C -0.135 4.135 11 C -0.102 4.102 12 C -0.109 4.109 13 C -0.159 4.159 14 C -0.347 4.347 15 S 0.346 5.654 16 C -0.346 4.346 17 C -0.192 4.192 18 C 0.028 3.972 19 N -0.321 5.321 20 C -0.349 4.349 21 H 0.095 0.905 22 C -0.207 4.207 23 N -0.569 5.569 24 Si 0.745 3.255 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.231 0.769 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.158 0.842 39 H 0.181 0.819 40 H 0.181 0.819 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.032 0.968 44 H 0.127 0.873 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.683 6.547 -26.294 27.106 hybrid contribution 0.661 0.968 2.296 2.578 sum 1.344 7.515 -23.998 25.183 Atomic orbital electron populations 1.22231 0.97915 1.01429 0.99865 1.21050 0.92523 0.94784 0.87001 0.94646 1.22130 0.97562 0.90867 0.86457 0.89127 1.46124 1.68933 1.15032 1.06740 1.20629 0.77417 0.88978 0.83468 1.90698 1.48972 1.20188 1.82332 1.21694 1.03507 0.98728 0.94190 1.21293 1.03264 0.97837 0.91099 1.20384 1.02546 0.97391 0.89844 1.18957 0.92948 1.01103 0.97853 1.20147 1.00139 0.99948 0.95699 1.25597 0.99775 1.08347 1.01021 1.84281 1.07543 1.52595 1.20981 1.25477 1.03036 1.07871 0.98255 1.23381 0.96781 0.99299 0.99736 1.21944 0.97402 0.88323 0.89557 1.44559 1.59269 1.28179 1.00054 1.18976 1.27322 1.08050 0.80543 0.90533 1.24796 1.00421 0.97382 0.98070 1.69787 1.39116 1.17707 1.30324 0.86155 0.77633 0.77399 0.84297 1.21247 1.21589 1.21189 0.92950 0.92746 0.94340 0.76865 0.88949 0.89042 0.91068 0.90957 0.90723 0.90889 0.84160 0.81941 0.81920 0.92082 0.92065 0.96849 0.87343 0.93643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.15 37.16 0.34 -2.53 16 2 C 0.15 3.08 3.49 -66.80 -0.23 2.85 16 3 H 0.04 0.68 7.70 -51.93 -0.40 0.28 16 4 C 0.13 2.45 2.79 -66.10 -0.18 2.26 16 5 H 0.09 1.80 7.33 -51.93 -0.38 1.42 16 6 N -0.72 -10.21 5.19 -52.03 -0.27 -10.48 16 7 C 0.51 7.18 7.83 -10.98 -0.09 7.09 16 8 O -0.54 -10.00 15.67 5.56 0.09 -9.92 16 9 C -0.14 -1.29 5.70 -27.88 -0.16 -1.45 16 10 C -0.10 -0.93 4.49 -26.73 -0.12 -1.05 16 11 C -0.06 -0.46 5.47 -27.88 -0.15 -0.61 16 12 C -0.10 -0.83 5.05 -106.25 -0.54 -1.37 16 13 C -0.13 -1.08 9.98 -41.21 -0.41 -1.49 16 14 C -0.21 -1.66 11.23 29.04 0.33 -1.34 16 15 S 0.08 0.66 23.34 -107.50 -2.51 -1.85 16 16 C -0.21 -1.77 10.98 29.04 0.32 -1.46 16 17 C -0.15 -3.04 6.77 -24.58 -0.17 -3.21 16 18 C 0.15 3.74 5.89 -2.53 -0.01 3.72 16 19 N -0.60 -14.80 3.14 -162.36 -0.51 -15.31 16 20 C -0.22 -5.98 9.91 -15.06 -0.15 -6.13 16 21 H 0.08 2.00 7.83 -52.49 -0.41 1.58 16 22 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 23 N -0.92 -26.64 10.09 55.49 0.56 -26.08 16 24 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.05 1.03 8.06 -51.93 -0.42 0.62 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.40 4.58 8.34 -40.82 -0.34 4.24 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 35 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 36 H 0.07 0.48 8.13 -51.93 -0.42 0.05 16 37 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 38 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.16 1.12 8.06 -52.48 -0.42 0.69 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.11 2.96 5.88 -51.93 -0.31 2.66 16 45 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 379.56 15.07 5.72 5.72 Total: -1.00 -31.95 379.56 -10.57 -42.52 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -7.30 Total: 3.70 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -1.32 Total: -5.11 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: -0.22 Total: -51.87 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -2.51 Total: -1.85 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.95 -10.57 -42.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691689134.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.222 kcal (2) G-P(sol) polarization free energy of solvation -31.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds