Wall clock time and date at job start Tue Mar 31 2020 14:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47395 * 2 1 4 4 S 1.81396 * 109.47330 * 119.99947 * 2 1 3 5 5 C 1.81404 * 103.00469 * 174.99797 * 4 2 1 6 6 C 1.50698 * 109.47275 * 179.97438 * 5 4 2 7 7 O 1.21287 * 119.99915 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00104 * 180.02562 * 6 5 4 9 9 C 1.46497 * 120.00091 * 180.02562 * 8 6 5 10 10 C 1.53007 * 109.47109 * 180.02562 * 9 8 6 11 11 H 1.09000 * 109.46831 * 64.99646 * 10 9 8 12 12 N 1.46506 * 109.46782 * 305.00022 * 10 9 8 13 13 C 1.36938 * 119.99589 * 155.00217 * 12 10 9 14 14 H 1.07999 * 120.00325 * 359.97438 * 13 12 10 15 15 C 1.38815 * 119.99817 * 180.02562 * 13 12 10 16 16 N 1.31621 * 119.99673 * 359.71804 * 15 13 12 17 17 Si 1.86795 * 120.00115 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47071 * 359.97438 * 17 15 13 19 19 H 1.48506 * 109.47211 * 119.99797 * 17 15 13 20 20 H 1.48493 * 109.47327 * 239.99664 * 17 15 13 21 21 C 1.50695 * 109.47111 * 184.99900 * 10 9 8 22 22 C 1.38241 * 119.99779 * 79.72889 * 21 10 9 23 23 C 1.38233 * 119.99752 * 179.78950 * 22 21 10 24 24 C 1.38240 * 120.00051 * 0.43349 * 23 22 21 25 25 C 1.38236 * 119.99857 * 359.81831 * 24 23 22 26 26 C 1.38229 * 119.99838 * 359.97438 * 25 24 23 27 27 H 1.09003 * 109.46846 * 300.00163 * 1 2 3 28 28 H 1.09002 * 109.47196 * 60.00155 * 1 2 3 29 29 H 1.08993 * 109.47192 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47312 * 240.00092 * 2 1 3 31 31 H 1.08994 * 109.46819 * 59.99710 * 3 2 1 32 32 H 1.08992 * 109.47239 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46822 * 300.00074 * 3 2 1 34 34 H 1.08999 * 109.46343 * 59.99881 * 5 4 2 35 35 H 1.08997 * 109.47046 * 300.00135 * 5 4 2 36 36 H 0.97004 * 119.99971 * 0.02562 * 8 6 5 37 37 H 1.08993 * 109.47197 * 60.00229 * 9 8 6 38 38 H 1.08997 * 109.47140 * 299.99817 * 9 8 6 39 39 H 0.96999 * 120.00080 * 334.99707 * 12 10 9 40 40 H 0.97000 * 120.00043 * 180.02562 * 16 15 13 41 41 H 1.08001 * 120.00350 * 359.97438 * 22 21 10 42 42 H 1.07999 * 120.00213 * 180.27583 * 23 22 21 43 43 H 1.07999 * 120.00315 * 179.83359 * 24 23 22 44 44 H 1.08000 * 119.99740 * 180.02562 * 25 24 23 45 45 H 1.08010 * 119.99845 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 2.1347 -0.8551 1.4811 5 6 3.9308 -0.8875 1.2290 6 6 4.5895 -1.5774 2.3957 7 8 3.9137 -2.0056 3.3073 8 7 5.9295 -1.7187 2.4261 9 6 6.5697 -2.3898 3.5600 10 6 8.0848 -2.4159 3.3480 11 1 8.4710 -1.3967 3.3606 12 7 8.3864 -3.0365 2.0555 13 6 9.5548 -2.7358 1.4077 14 1 10.2537 -2.0409 1.8493 15 6 9.8403 -3.3233 0.1829 16 7 8.9906 -4.1736 -0.3531 17 14 11.4337 -2.9126 -0.7012 18 1 12.2127 -1.9414 0.1081 19 1 12.2296 -4.1523 -0.8885 20 1 11.1255 -2.3174 -2.0262 21 6 8.7327 -3.2123 4.4510 22 6 8.7311 -4.5938 4.3988 23 6 9.3292 -5.3242 5.4085 24 6 9.9212 -4.6735 6.4749 25 6 9.9183 -3.2923 6.5297 26 6 9.3239 -2.5618 5.5178 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 4.3053 0.1333 1.1523 35 1 4.1591 -1.4282 0.3105 36 1 6.4700 -1.3759 1.6971 37 1 6.1956 -3.4107 3.6363 38 1 6.3410 -1.8494 4.4784 39 1 7.7585 -3.6604 1.6588 40 1 9.1902 -4.5845 -1.2088 41 1 8.2651 -5.1022 3.5678 42 1 9.3319 -6.4034 5.3656 43 1 10.3862 -5.2443 7.2651 44 1 10.3811 -2.7839 7.3626 45 1 9.3219 -1.4825 5.5604 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753296773.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:19 Heat of formation + Delta-G solvation = -10.424565 kcal Electronic energy + Delta-G solvation = -24272.175208 eV Core-core repulsion = 20801.674353 eV Total energy + Delta-G solvation = -3470.500855 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.49036 -38.73687 -35.93339 -34.94072 -33.62573 -32.11411 -30.43134 -30.22111 -29.58739 -27.55480 -26.92617 -23.79464 -22.81762 -22.08650 -21.92780 -20.28525 -19.93439 -17.53277 -16.99306 -16.54645 -16.21899 -15.87858 -15.50677 -15.06665 -14.82652 -14.62507 -14.23893 -14.16387 -13.81893 -13.59928 -13.41283 -13.01008 -12.90921 -12.80316 -12.67678 -12.49923 -12.25044 -11.93547 -11.67672 -11.49911 -11.35897 -11.16213 -11.00398 -10.86843 -10.74245 -10.48387 -10.15344 -9.86505 -9.79337 -9.74353 -9.13205 -8.74705 -8.42469 -8.21145 -7.65312 -7.18199 -5.91659 -3.23151 1.44148 1.84765 1.91140 2.48489 2.81816 3.33714 3.41405 3.42575 3.50226 4.28737 4.46325 4.56325 4.64405 4.91974 4.99907 5.05115 5.21669 5.24897 5.32733 5.33340 5.39707 5.42793 5.45753 5.50208 5.53391 5.58417 5.61375 5.74552 5.83822 5.89430 5.90278 6.01735 6.07244 6.23359 6.38747 6.46566 6.60736 6.73664 6.91759 7.00256 7.25971 7.51038 7.59773 7.79024 8.24414 8.44253 9.37706 9.87336 10.24073 11.29725 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010241 B = 0.003363 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.408199 B = 8323.170700 C =10413.477125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.084 4.084 3 C -0.148 4.148 4 S -0.183 6.183 5 C -0.126 4.126 6 C 0.528 3.472 7 O -0.533 6.533 8 N -0.708 5.708 9 C 0.122 3.878 10 C 0.198 3.802 11 H 0.066 0.934 12 N -0.714 5.714 13 C -0.243 4.243 14 H 0.072 0.928 15 C -0.005 4.005 16 N -0.928 5.928 17 Si 0.905 3.095 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C -0.082 4.082 22 C -0.083 4.083 23 C -0.127 4.127 24 C -0.134 4.134 25 C -0.130 4.130 26 C -0.120 4.120 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.411 0.589 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.387 0.613 40 H 0.256 0.744 41 H 0.123 0.877 42 H 0.114 0.886 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.623 7.829 4.454 13.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.213 4.213 3 C -0.207 4.207 4 S 0.043 5.957 5 C -0.278 4.278 6 C 0.312 3.688 7 O -0.410 6.410 8 N -0.361 5.361 9 C -0.002 4.002 10 C 0.087 3.913 11 H 0.083 0.917 12 N -0.355 5.355 13 C -0.374 4.374 14 H 0.090 0.910 15 C -0.202 4.202 16 N -0.575 5.575 17 Si 0.736 3.264 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.219 1.219 21 C -0.086 4.086 22 C -0.102 4.102 23 C -0.146 4.146 24 C -0.152 4.152 25 C -0.148 4.148 26 C -0.139 4.139 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.248 0.752 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.222 0.778 40 H 0.066 0.934 41 H 0.141 0.859 42 H 0.132 0.868 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.515 7.175 5.857 14.012 hybrid contribution 2.064 0.437 -2.154 3.015 sum -8.451 7.611 3.703 11.961 Atomic orbital electron populations 1.21554 0.91764 1.02990 1.02557 1.23248 0.99963 0.98862 0.99192 1.22102 1.01218 0.94609 1.02780 1.87390 1.02024 1.76633 1.29623 1.23514 0.96838 1.05209 1.02201 1.19572 0.82639 0.79844 0.86768 1.90722 1.63178 1.49282 1.37800 1.45847 1.06107 1.59188 1.24954 1.21604 0.92768 0.97611 0.88236 1.19483 0.90341 0.95755 0.85694 0.91651 1.42475 1.22949 1.52912 1.17189 1.19235 0.96437 1.21545 1.00212 0.91020 1.24722 0.98331 0.99230 0.97930 1.69665 1.36168 1.32517 1.19188 0.86157 0.83200 0.77556 0.79481 1.20515 1.21818 1.21854 1.20957 0.97731 0.94767 0.95098 1.21007 0.97968 0.93867 0.97330 1.21109 0.99134 0.99478 0.94831 1.20988 1.01065 0.94595 0.98575 1.20984 1.00755 0.94183 0.98876 1.21007 0.99182 0.99402 0.94310 0.91710 0.91280 0.91611 0.89500 0.91343 0.92491 0.91921 0.87413 0.87037 0.75199 0.91465 0.91403 0.77844 0.93415 0.85925 0.86834 0.87065 0.86975 0.86749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.06 9.20 37.16 0.34 -0.71 16 2 C -0.08 -0.79 3.38 -26.73 -0.09 -0.88 16 3 C -0.15 -1.22 9.10 37.16 0.34 -0.88 16 4 S -0.18 -2.42 20.29 -107.50 -2.18 -4.60 16 5 C -0.13 -1.61 6.12 36.00 0.22 -1.39 16 6 C 0.53 8.51 7.85 -10.99 -0.09 8.43 16 7 O -0.53 -10.42 15.87 5.55 0.09 -10.33 16 8 N -0.71 -11.14 5.39 -60.30 -0.32 -11.47 16 9 C 0.12 2.03 5.21 -4.04 -0.02 2.01 16 10 C 0.20 3.56 2.64 -69.08 -0.18 3.38 16 11 H 0.07 1.16 7.94 -51.93 -0.41 0.75 16 12 N -0.71 -15.68 3.81 -54.55 -0.21 -15.89 16 13 C -0.24 -6.11 9.92 -15.06 -0.15 -6.26 16 14 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 15 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 16 N -0.93 -25.96 13.06 55.49 0.72 -25.24 16 17 Si 0.91 21.24 29.55 -169.99 -5.02 16.22 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 C -0.08 -1.45 4.92 -104.63 -0.51 -1.97 16 22 C -0.08 -1.52 9.32 -39.58 -0.37 -1.89 16 23 C -0.13 -2.06 10.05 -39.58 -0.40 -2.46 16 24 C -0.13 -1.97 10.05 -39.58 -0.40 -2.37 16 25 C -0.13 -1.90 10.05 -39.59 -0.40 -2.29 16 26 C -0.12 -1.91 9.67 -39.59 -0.38 -2.29 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.80 8.14 -51.92 -0.42 0.37 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.47 6.92 -51.93 -0.36 0.11 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.11 1.13 7.14 -51.92 -0.37 0.76 16 35 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.41 6.36 8.14 -40.82 -0.33 6.02 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.39 9.21 7.80 -40.82 -0.32 8.90 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.12 2.40 7.73 -52.49 -0.41 1.99 16 42 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 43 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 44 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 45 H 0.11 1.59 8.04 -52.48 -0.42 1.17 16 LS Contribution 389.55 15.07 5.87 5.87 Total: -1.00 -29.98 389.55 -10.48 -40.46 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: -7.24 Total: 14.81 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -2.18 Total: -9.83 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: 0.19 Total: -52.60 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.09 Total: -10.33 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -2.42 SS G_CDS: -2.18 Total: -4.60 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.98 -10.48 -40.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753296773.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.034 kcal (2) G-P(sol) polarization free energy of solvation -29.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds