Wall clock time and date at job start Tue Mar 31 2020 14:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47217 * 2 1 4 4 S 1.81407 * 109.47171 * 119.99863 * 2 1 3 5 5 C 1.81404 * 102.99806 * 174.99770 * 4 2 1 6 6 C 1.50697 * 109.46666 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00521 * 359.72981 * 6 5 4 8 8 N 1.34784 * 119.99774 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99893 * 179.72962 * 8 6 5 10 10 C 1.53003 * 109.46708 * 180.02562 * 9 8 6 11 11 H 1.08999 * 109.46677 * 294.99254 * 10 9 8 12 12 N 1.46491 * 109.47746 * 54.99751 * 10 9 8 13 13 C 1.36933 * 120.00454 * 205.00333 * 12 10 9 14 14 H 1.07995 * 119.99809 * 359.97438 * 13 12 10 15 15 C 1.38811 * 120.00487 * 179.97438 * 13 12 10 16 16 N 1.31617 * 120.00484 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99665 * 359.97438 * 15 13 12 18 18 H 1.48495 * 109.47399 * 89.99865 * 17 15 13 19 19 H 1.48507 * 109.47010 * 210.00003 * 17 15 13 20 20 H 1.48503 * 109.47233 * 329.99574 * 17 15 13 21 21 C 1.50707 * 109.46900 * 175.00146 * 10 9 8 22 22 C 1.38239 * 119.99272 * 279.72250 * 21 10 9 23 23 C 1.38239 * 119.99306 * 179.78997 * 22 21 10 24 24 C 1.38235 * 119.99919 * 0.44082 * 23 22 21 25 25 C 1.38225 * 120.00415 * 359.81147 * 24 23 22 26 26 C 1.38232 * 120.00411 * 99.99698 * 21 10 9 27 27 H 1.09008 * 109.47180 * 299.99714 * 1 2 3 28 28 H 1.08993 * 109.47272 * 59.99626 * 1 2 3 29 29 H 1.08997 * 109.47453 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47436 * 240.00101 * 2 1 3 31 31 H 1.08993 * 109.46828 * 300.00120 * 3 2 1 32 32 H 1.09001 * 109.46480 * 60.00028 * 3 2 1 33 33 H 1.08998 * 109.46677 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46813 * 60.00742 * 5 4 2 35 35 H 1.08993 * 109.47482 * 300.00324 * 5 4 2 36 36 H 0.97005 * 119.99846 * 359.72750 * 8 6 5 37 37 H 1.08998 * 109.47134 * 299.99552 * 9 8 6 38 38 H 1.08994 * 109.47397 * 59.99843 * 9 8 6 39 39 H 0.97006 * 119.99804 * 24.99370 * 12 10 9 40 40 H 0.96998 * 119.99934 * 180.02562 * 16 15 13 41 41 H 1.08001 * 120.00393 * 359.97438 * 22 21 10 42 42 H 1.08002 * 119.99821 * 180.27366 * 23 22 21 43 43 H 1.07998 * 119.99314 * 179.83580 * 24 23 22 44 44 H 1.08001 * 120.00417 * 180.02562 * 25 24 23 45 45 H 1.08001 * 119.99481 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 16 2.1347 -0.8551 1.4812 5 6 3.9308 -0.8875 1.2290 6 6 4.5894 -1.5774 2.3956 7 8 3.9142 -2.0008 3.3098 8 7 5.9295 -1.7186 2.4260 9 6 6.5703 -2.3840 3.5630 10 6 8.0852 -2.4113 3.3502 11 1 8.3193 -3.0306 2.4844 12 7 8.5710 -1.0484 3.1215 13 6 9.7304 -0.8429 2.4225 14 1 10.2870 -1.6857 2.0402 15 6 10.1904 0.4486 2.2053 16 7 11.3051 0.6461 1.5339 17 14 9.2274 1.9065 2.8660 18 1 9.7015 2.2338 4.2347 19 1 9.4323 3.0788 1.9776 20 1 7.7826 1.5661 2.9109 21 6 8.7540 -2.9844 4.5732 22 6 8.9644 -2.1876 5.6831 23 6 9.5739 -2.7145 6.8065 24 6 9.9812 -4.0354 6.8165 25 6 9.7755 -4.8306 5.7048 26 6 9.1622 -4.3051 4.5830 27 1 -0.3634 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4424 0.0005 34 1 4.3053 0.1333 1.1524 35 1 4.1591 -1.4281 0.3105 36 1 6.4696 -1.3797 1.6950 37 1 6.3423 -1.8388 4.4788 38 1 6.1961 -3.4044 3.6449 39 1 8.0712 -0.2913 3.4651 40 1 11.6267 1.5486 1.3825 41 1 8.6498 -1.1545 5.6737 42 1 9.7342 -2.0933 7.6753 43 1 10.4597 -4.4462 7.6932 44 1 10.0934 -5.8628 5.7127 45 1 9.0014 -4.9263 3.7143 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753296774.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:23 Heat of formation + Delta-G solvation = -5.742397 kcal Electronic energy + Delta-G solvation = -24397.737278 eV Core-core repulsion = 20927.439457 eV Total energy + Delta-G solvation = -3470.297821 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.62997 -38.83375 -36.11207 -35.00136 -33.74094 -32.15979 -30.53765 -30.35584 -30.05521 -27.67130 -27.11390 -23.66993 -22.77335 -22.15319 -21.95927 -20.41549 -20.02397 -18.00970 -17.13926 -16.62303 -16.28056 -15.92285 -15.72545 -15.08002 -15.01255 -14.69311 -14.28882 -14.25350 -13.94304 -13.63864 -13.48999 -13.02158 -12.99353 -12.90800 -12.74707 -12.54554 -12.37214 -12.19807 -11.74037 -11.56950 -11.46680 -11.40038 -11.10126 -10.93669 -10.80803 -10.62007 -10.24247 -9.88915 -9.87126 -9.72647 -9.17039 -8.89976 -8.48583 -8.28703 -7.74415 -7.49308 -5.90850 -3.29798 1.34677 1.78446 1.84368 2.39251 2.68291 3.23864 3.28601 3.34249 3.37133 4.21585 4.44664 4.49914 4.58208 4.78771 4.89554 4.97535 5.00601 5.12434 5.24965 5.28965 5.30792 5.33330 5.38905 5.40795 5.45535 5.50097 5.55636 5.62869 5.67048 5.83483 5.87668 5.92947 5.98150 6.04379 6.27731 6.38524 6.51143 6.59792 6.86311 6.91326 7.15054 7.43407 7.63944 7.82447 8.26497 8.30160 9.02589 9.74211 9.91678 11.26781 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011116 B = 0.003539 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.197969 B = 7909.059301 C = 9784.762783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.082 4.082 3 C -0.150 4.150 4 S -0.182 6.182 5 C -0.128 4.128 6 C 0.527 3.473 7 O -0.529 6.529 8 N -0.713 5.713 9 C 0.119 3.881 10 C 0.205 3.795 11 H 0.075 0.925 12 N -0.739 5.739 13 C -0.249 4.249 14 H 0.092 0.908 15 C 0.013 3.987 16 N -0.927 5.927 17 Si 0.878 3.122 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.277 1.277 21 C -0.081 4.081 22 C -0.087 4.087 23 C -0.127 4.127 24 C -0.131 4.131 25 C -0.127 4.127 26 C -0.116 4.116 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.411 0.589 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.363 0.637 40 H 0.261 0.739 41 H 0.117 0.883 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.947 -4.387 -0.285 15.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.211 4.211 3 C -0.209 4.209 4 S 0.044 5.956 5 C -0.280 4.280 6 C 0.311 3.689 7 O -0.406 6.406 8 N -0.366 5.366 9 C -0.005 4.005 10 C 0.094 3.906 11 H 0.092 0.908 12 N -0.382 5.382 13 C -0.378 4.378 14 H 0.110 0.890 15 C -0.183 4.183 16 N -0.574 5.574 17 Si 0.708 3.292 18 H -0.210 1.210 19 H -0.216 1.216 20 H -0.203 1.203 21 C -0.085 4.085 22 C -0.106 4.106 23 C -0.145 4.145 24 C -0.150 4.150 25 C -0.145 4.145 26 C -0.135 4.135 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.248 0.752 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.197 0.803 40 H 0.071 0.929 41 H 0.135 0.865 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.132 0.868 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.778 -5.100 1.052 16.615 hybrid contribution 0.832 1.893 -0.931 2.268 sum -14.945 -3.207 0.121 15.286 Atomic orbital electron populations 1.21558 0.91706 1.02951 1.02678 1.23251 0.99990 0.98939 0.98946 1.22116 1.01309 0.94541 1.02920 1.87407 1.01716 1.76488 1.30006 1.23525 0.97097 1.05485 1.01853 1.19600 0.82594 0.79731 0.86943 1.90728 1.63205 1.49158 1.37530 1.45896 1.06134 1.59781 1.24770 1.21661 0.92549 0.97600 0.88720 1.19435 0.89079 0.88228 0.93830 0.90752 1.42823 1.28110 1.00761 1.66464 1.19012 0.98230 0.93943 1.26621 0.88998 1.24636 0.96942 0.96839 0.99915 1.69687 1.22048 1.20895 1.44768 0.86676 0.79729 0.83842 0.78952 1.20957 1.21649 1.20301 1.20820 0.98247 0.93223 0.96178 1.20915 0.97837 0.99453 0.92381 1.21090 0.99597 0.95438 0.98342 1.20996 1.01252 0.94445 0.98280 1.21006 1.00239 0.99390 0.93886 1.21004 0.99309 0.95113 0.98039 0.91657 0.91205 0.91641 0.89556 0.91819 0.91267 0.92432 0.87149 0.87232 0.75239 0.91484 0.90908 0.80305 0.92894 0.86478 0.86792 0.86933 0.86794 0.86532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.99 9.20 37.16 0.34 -0.65 16 2 C -0.08 -0.74 3.38 -26.73 -0.09 -0.83 16 3 C -0.15 -1.25 9.10 37.16 0.34 -0.91 16 4 S -0.18 -2.30 20.29 -107.50 -2.18 -4.48 16 5 C -0.13 -1.54 6.12 36.00 0.22 -1.32 16 6 C 0.53 8.04 7.85 -10.98 -0.09 7.96 16 7 O -0.53 -9.87 15.86 5.56 0.09 -9.78 16 8 N -0.71 -10.55 5.39 -60.30 -0.32 -10.88 16 9 C 0.12 1.85 5.21 -4.04 -0.02 1.83 16 10 C 0.20 3.52 2.65 -69.08 -0.18 3.34 16 11 H 0.07 1.28 7.94 -51.93 -0.41 0.87 16 12 N -0.74 -15.35 3.59 -54.55 -0.20 -15.54 16 13 C -0.25 -6.35 10.40 -15.06 -0.16 -6.51 16 14 H 0.09 2.58 8.06 -52.49 -0.42 2.15 16 15 C 0.01 0.36 5.50 -17.43 -0.10 0.26 16 16 N -0.93 -27.59 13.97 55.49 0.78 -26.82 16 17 Si 0.88 20.68 27.73 -169.99 -4.71 15.97 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.28 -6.03 6.52 56.52 0.37 -5.67 16 21 C -0.08 -1.39 4.92 -104.62 -0.52 -1.91 16 22 C -0.09 -1.53 9.33 -39.58 -0.37 -1.90 16 23 C -0.13 -1.97 10.05 -39.58 -0.40 -2.37 16 24 C -0.13 -1.88 10.05 -39.59 -0.40 -2.28 16 25 C -0.13 -1.82 10.05 -39.59 -0.40 -2.21 16 26 C -0.12 -1.80 9.67 -39.59 -0.38 -2.18 16 27 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.50 6.92 -51.93 -0.36 0.14 16 34 H 0.11 1.20 7.14 -51.92 -0.37 0.83 16 35 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.41 5.90 8.14 -40.82 -0.33 5.57 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.36 7.59 5.66 -40.82 -0.23 7.36 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.12 2.10 7.71 -52.49 -0.40 1.69 16 42 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 43 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 44 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 45 H 0.12 1.58 8.04 -52.49 -0.42 1.16 16 LS Contribution 386.41 15.07 5.82 5.82 Total: -1.00 -31.48 386.41 -10.12 -41.60 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -7.20 Total: 13.78 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -2.19 Total: -9.67 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: 0.25 Total: -53.24 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.71 Total: 15.97 kcal Atomic # 16 Polarization: -2.30 SS G_CDS: -2.18 Total: -4.48 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.48 -10.12 -41.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753296774.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.860 kcal (2) G-P(sol) polarization free energy of solvation -31.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds