Wall clock time and date at job start Tue Mar 31 2020 14:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47217 * 2 1 4 4 S 1.81407 * 109.47171 * 119.99863 * 2 1 3 5 5 C 1.81404 * 102.99806 * 174.99770 * 4 2 1 6 6 C 1.50697 * 109.46666 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00521 * 359.72981 * 6 5 4 8 8 N 1.34784 * 119.99774 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99893 * 179.72962 * 8 6 5 10 10 C 1.53003 * 109.46708 * 180.02562 * 9 8 6 11 11 H 1.08999 * 109.46677 * 294.99254 * 10 9 8 12 12 N 1.46491 * 109.47746 * 54.99751 * 10 9 8 13 13 C 1.36933 * 120.00454 * 205.00333 * 12 10 9 14 14 H 1.07995 * 119.99809 * 359.97438 * 13 12 10 15 15 C 1.38811 * 120.00487 * 179.97438 * 13 12 10 16 16 N 1.31617 * 120.00484 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99665 * 359.97438 * 15 13 12 18 18 H 1.48495 * 109.47399 * 89.99865 * 17 15 13 19 19 H 1.48507 * 109.47010 * 210.00003 * 17 15 13 20 20 H 1.48503 * 109.47233 * 329.99574 * 17 15 13 21 21 C 1.50707 * 109.46900 * 175.00146 * 10 9 8 22 22 C 1.38239 * 119.99272 * 279.72250 * 21 10 9 23 23 C 1.38239 * 119.99306 * 179.78997 * 22 21 10 24 24 C 1.38235 * 119.99919 * 0.44082 * 23 22 21 25 25 C 1.38225 * 120.00415 * 359.81147 * 24 23 22 26 26 C 1.38232 * 120.00411 * 99.99698 * 21 10 9 27 27 H 1.09008 * 109.47180 * 299.99714 * 1 2 3 28 28 H 1.08993 * 109.47272 * 59.99626 * 1 2 3 29 29 H 1.08997 * 109.47453 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47436 * 240.00101 * 2 1 3 31 31 H 1.08993 * 109.46828 * 300.00120 * 3 2 1 32 32 H 1.09001 * 109.46480 * 60.00028 * 3 2 1 33 33 H 1.08998 * 109.46677 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46813 * 60.00742 * 5 4 2 35 35 H 1.08993 * 109.47482 * 300.00324 * 5 4 2 36 36 H 0.97005 * 119.99846 * 359.72750 * 8 6 5 37 37 H 1.08998 * 109.47134 * 299.99552 * 9 8 6 38 38 H 1.08994 * 109.47397 * 59.99843 * 9 8 6 39 39 H 0.97006 * 119.99804 * 24.99370 * 12 10 9 40 40 H 0.96998 * 119.99934 * 180.02562 * 16 15 13 41 41 H 1.08001 * 120.00393 * 359.97438 * 22 21 10 42 42 H 1.08002 * 119.99821 * 180.27366 * 23 22 21 43 43 H 1.07998 * 119.99314 * 179.83580 * 24 23 22 44 44 H 1.08001 * 120.00417 * 180.02562 * 25 24 23 45 45 H 1.08001 * 119.99481 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 16 2.1347 -0.8551 1.4812 5 6 3.9308 -0.8875 1.2290 6 6 4.5894 -1.5774 2.3956 7 8 3.9142 -2.0008 3.3098 8 7 5.9295 -1.7186 2.4260 9 6 6.5703 -2.3840 3.5630 10 6 8.0852 -2.4113 3.3502 11 1 8.3193 -3.0306 2.4844 12 7 8.5710 -1.0484 3.1215 13 6 9.7304 -0.8429 2.4225 14 1 10.2870 -1.6857 2.0402 15 6 10.1904 0.4486 2.2053 16 7 11.3051 0.6461 1.5339 17 14 9.2274 1.9065 2.8660 18 1 9.7015 2.2338 4.2347 19 1 9.4323 3.0788 1.9776 20 1 7.7826 1.5661 2.9109 21 6 8.7540 -2.9844 4.5732 22 6 8.9644 -2.1876 5.6831 23 6 9.5739 -2.7145 6.8065 24 6 9.9812 -4.0354 6.8165 25 6 9.7755 -4.8306 5.7048 26 6 9.1622 -4.3051 4.5830 27 1 -0.3634 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4424 0.0005 34 1 4.3053 0.1333 1.1524 35 1 4.1591 -1.4281 0.3105 36 1 6.4696 -1.3797 1.6950 37 1 6.3423 -1.8388 4.4788 38 1 6.1961 -3.4044 3.6449 39 1 8.0712 -0.2913 3.4651 40 1 11.6267 1.5486 1.3825 41 1 8.6498 -1.1545 5.6737 42 1 9.7342 -2.0933 7.6753 43 1 10.4597 -4.4462 7.6932 44 1 10.0934 -5.8628 5.7127 45 1 9.0014 -4.9263 3.7143 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753296774.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:22 Heat of formation + Delta-G solvation = -24.062397 kcal Electronic energy + Delta-G solvation = -24398.531692 eV Core-core repulsion = 20927.439457 eV Total energy + Delta-G solvation = -3471.092235 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.90003 -40.07450 -37.55207 -35.67102 -35.28080 -33.84236 -31.92958 -31.57959 -31.36411 -28.76737 -27.97879 -25.37370 -24.17787 -23.23880 -22.84956 -21.66132 -21.34895 -19.87275 -18.29989 -17.78213 -17.45036 -17.08528 -16.94664 -16.49488 -16.06698 -15.92751 -15.63105 -15.30617 -15.04228 -14.94260 -14.58699 -14.52074 -14.22427 -14.09894 -14.07790 -13.63513 -13.53661 -13.14849 -13.04731 -12.90153 -12.50929 -12.42806 -12.22196 -12.17741 -12.13325 -12.03239 -11.79190 -11.70993 -11.19892 -11.01114 -10.70057 -10.17153 -9.69993 -9.61421 -9.31975 -8.70347 -8.00950 -5.36183 0.44713 0.57728 0.62598 1.35820 1.39677 1.45708 1.49695 1.56065 2.19380 2.46971 2.98657 3.31265 3.46236 3.68668 3.85602 3.94058 3.95203 4.01831 4.10590 4.16780 4.23226 4.31434 4.31618 4.34199 4.38126 4.65915 4.71970 4.75755 4.77171 4.79757 4.85707 4.95596 4.97791 5.18950 5.24177 5.25348 5.27510 5.35834 5.67705 5.70487 5.76536 5.87520 6.21897 6.24295 6.43563 7.05590 7.10767 7.77824 7.97746 9.20182 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011116 B = 0.003539 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.197969 B = 7909.059301 C = 9784.762783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.066 4.066 3 C -0.150 4.150 4 S -0.245 6.245 5 C -0.116 4.116 6 C 0.526 3.474 7 O -0.566 6.566 8 N -0.709 5.709 9 C 0.131 3.869 10 C 0.210 3.790 11 H 0.074 0.926 12 N -0.736 5.736 13 C -0.218 4.218 14 H 0.061 0.939 15 C -0.050 4.050 16 N -0.980 5.980 17 Si 0.941 3.059 18 H -0.289 1.289 19 H -0.298 1.298 20 H -0.249 1.249 21 C -0.103 4.103 22 C -0.114 4.114 23 C -0.136 4.136 24 C -0.131 4.131 25 C -0.127 4.127 26 C -0.126 4.126 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.124 0.876 35 H 0.134 0.866 36 H 0.415 0.585 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.365 0.635 40 H 0.256 0.744 41 H 0.104 0.896 42 H 0.131 0.869 43 H 0.144 0.856 44 H 0.145 0.855 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.173 -4.890 -0.221 16.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.195 4.195 3 C -0.208 4.208 4 S -0.019 6.019 5 C -0.267 4.267 6 C 0.311 3.689 7 O -0.445 6.445 8 N -0.362 5.362 9 C 0.006 3.994 10 C 0.101 3.899 11 H 0.092 0.908 12 N -0.379 5.379 13 C -0.349 4.349 14 H 0.079 0.921 15 C -0.242 4.242 16 N -0.630 5.630 17 Si 0.769 3.231 18 H -0.216 1.216 19 H -0.225 1.225 20 H -0.173 1.173 21 C -0.106 4.106 22 C -0.132 4.132 23 C -0.154 4.154 24 C -0.149 4.149 25 C -0.145 4.145 26 C -0.145 4.145 27 H 0.077 0.923 28 H 0.111 0.889 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.142 0.858 35 H 0.152 0.848 36 H 0.252 0.748 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.199 0.801 40 H 0.065 0.935 41 H 0.122 0.878 42 H 0.149 0.851 43 H 0.161 0.839 44 H 0.163 0.837 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.047 -5.641 1.129 17.992 hybrid contribution 1.212 1.896 -0.917 2.430 sum -15.835 -3.745 0.212 16.273 Atomic orbital electron populations 1.21592 0.90735 1.03048 1.03440 1.23325 1.00558 0.98768 0.96836 1.22115 1.01117 0.94109 1.03489 1.87629 1.02981 1.77720 1.33556 1.23457 0.96045 1.06074 1.01115 1.20113 0.82311 0.79116 0.87326 1.90713 1.63910 1.50760 1.39158 1.45878 1.06255 1.59543 1.24518 1.21485 0.91200 0.98070 0.88656 1.19489 0.90053 0.86217 0.94102 0.90769 1.42701 1.26722 1.02502 1.65979 1.18887 0.98560 0.92689 1.24738 0.92112 1.25284 0.98109 0.99631 1.01209 1.69854 1.24468 1.21092 1.47599 0.85641 0.79952 0.80084 0.77409 1.21609 1.22512 1.17325 1.20773 0.99469 0.94337 0.95992 1.20987 0.99464 0.99149 0.93609 1.21373 0.99202 0.96529 0.98302 1.21407 1.00276 0.93825 0.99376 1.21416 0.99001 1.00892 0.93171 1.21278 0.99219 0.94660 0.99341 0.92303 0.88891 0.91928 0.88298 0.89863 0.92024 0.92755 0.85813 0.84769 0.74818 0.92454 0.89995 0.80120 0.93465 0.87827 0.85086 0.83858 0.83720 0.84949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.72 9.20 71.98 0.66 -1.06 16 2 C -0.07 -1.05 3.38 30.60 0.10 -0.95 16 3 C -0.15 -2.16 9.10 71.98 0.66 -1.50 16 4 S -0.24 -5.96 20.29 -56.49 -1.15 -7.10 16 5 C -0.12 -2.60 6.12 71.24 0.44 -2.16 16 6 C 0.53 15.54 7.85 87.65 0.69 16.22 16 7 O -0.57 -21.01 15.86 -3.04 -0.05 -21.06 16 8 N -0.71 -20.24 5.39 -463.06 -2.49 -22.73 16 9 C 0.13 3.98 5.21 86.38 0.45 4.43 16 10 C 0.21 7.15 2.65 44.25 0.12 7.27 16 11 H 0.07 2.53 7.94 -2.39 -0.02 2.51 16 12 N -0.74 -30.31 3.59 -326.51 -1.17 -31.49 16 13 C -0.22 -11.25 10.40 84.03 0.87 -10.38 16 14 H 0.06 3.50 8.06 -2.91 -0.02 3.47 16 15 C -0.05 -2.77 5.50 84.86 0.47 -2.31 16 16 N -0.98 -59.80 13.97 21.65 0.30 -59.50 16 17 Si 0.94 42.95 27.73 68.60 1.90 44.85 16 18 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 19 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 20 H -0.25 -10.04 6.52 99.48 0.65 -9.39 16 21 C -0.10 -3.47 4.92 -19.86 -0.10 -3.57 16 22 C -0.11 -3.93 9.33 22.27 0.21 -3.72 16 23 C -0.14 -4.04 10.05 22.27 0.22 -3.82 16 24 C -0.13 -3.39 10.05 22.27 0.22 -3.17 16 25 C -0.13 -3.29 10.05 22.27 0.22 -3.06 16 26 C -0.13 -3.73 9.67 22.27 0.22 -3.51 16 27 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 33 H 0.05 0.82 6.92 -2.39 -0.02 0.80 16 34 H 0.12 2.44 7.14 -2.39 -0.02 2.42 16 35 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.41 11.33 8.14 -92.70 -0.75 10.57 16 37 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.37 14.89 5.66 -92.70 -0.52 14.37 16 40 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 41 H 0.10 3.76 7.71 -2.91 -0.02 3.74 16 42 H 0.13 3.31 8.06 -2.91 -0.02 3.29 16 43 H 0.14 2.80 8.06 -2.91 -0.02 2.77 16 44 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 45 H 0.13 3.37 8.04 -2.91 -0.02 3.34 16 Total: -1.00 -69.55 386.41 2.44 -67.11 By element: Atomic # 1 Polarization: 41.56 SS G_CDS: -0.35 Total: 41.21 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: 5.45 Total: -11.29 kcal Atomic # 7 Polarization: -110.36 SS G_CDS: -3.37 Total: -113.72 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.05 Total: -21.06 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 1.90 Total: 44.85 kcal Atomic # 16 Polarization: -5.96 SS G_CDS: -1.15 Total: -7.10 kcal Total: -69.55 2.44 -67.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753296774.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.052 kcal (2) G-P(sol) polarization free energy of solvation -69.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds