Wall clock time and date at job start Tue Mar 31 2020 13:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46666 * 2 1 4 4 N 1.46504 * 109.46913 * 180.02562 * 3 2 1 5 5 C 1.36935 * 120.00140 * 179.97438 * 4 3 2 6 6 H 1.07998 * 119.99999 * 359.97438 * 5 4 3 7 7 C 1.38808 * 120.00149 * 180.02562 * 5 4 3 8 8 N 1.31624 * 120.00055 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00027 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46967 * 59.99948 * 9 7 5 11 11 H 1.48505 * 109.46836 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47165 * 299.99541 * 9 7 5 13 13 N 1.46497 * 109.47152 * 119.99682 * 2 1 3 14 14 C 1.34777 * 119.99984 * 294.93412 * 13 2 1 15 15 O 1.21284 * 120.00242 * 5.19331 * 14 13 2 16 16 C 1.50698 * 120.00165 * 185.20093 * 14 13 2 17 17 C 1.52999 * 109.47364 * 179.97438 * 16 14 13 18 18 C 1.50706 * 109.47175 * 179.97438 * 17 16 14 19 19 C 1.33392 * 125.19927 * 90.00090 * 18 17 16 20 20 C 1.38420 * 114.92010 * 179.97438 * 19 18 17 21 21 C 1.33398 * 114.92083 * 359.97438 * 20 19 18 22 22 S 1.75880 * 109.59210 * 359.76065 * 21 20 19 23 23 C 1.52991 * 109.47356 * 239.99994 * 2 1 3 24 24 C 1.53006 * 117.51963 * 225.38598 * 23 2 1 25 25 C 1.53001 * 60.00094 * 107.48019 * 24 23 2 26 26 H 1.08998 * 109.47209 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47787 * 300.00387 * 1 2 3 28 28 H 1.09006 * 109.47456 * 60.00440 * 1 2 3 29 29 H 1.09003 * 109.46876 * 299.99420 * 3 2 1 30 30 H 1.08997 * 109.47444 * 59.99757 * 3 2 1 31 31 H 0.97000 * 119.99972 * 359.97438 * 4 3 2 32 32 H 0.97000 * 120.00155 * 180.02562 * 8 7 5 33 33 H 0.96992 * 120.00195 * 114.93422 * 13 2 1 34 34 H 1.09006 * 109.46659 * 300.00064 * 16 14 13 35 35 H 1.09000 * 109.47145 * 59.99592 * 16 14 13 36 36 H 1.08997 * 109.47253 * 299.99984 * 17 16 14 37 37 H 1.09004 * 109.46689 * 60.00039 * 17 16 14 38 38 H 1.08000 * 122.53941 * 359.95545 * 19 18 17 39 39 H 1.08001 * 122.54351 * 180.02562 * 20 19 18 40 40 H 1.07995 * 125.20228 * 180.02562 * 21 20 19 41 41 H 1.09000 * 115.55486 * 79.68439 * 23 2 1 42 42 H 1.08993 * 117.49847 * 214.97187 * 24 23 2 43 43 H 1.08998 * 117.49500 * 359.97438 * 24 23 2 44 44 H 1.08999 * 117.50164 * 252.51582 * 25 24 23 45 45 H 1.08997 * 117.49735 * 107.48982 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.1895 2.6286 -0.0013 6 1 3.6495 3.5639 -0.0017 7 6 5.5776 2.6286 -0.0024 8 7 6.2358 1.4888 -0.0023 9 14 6.5116 4.2464 -0.0040 10 1 6.1537 5.0258 1.2084 11 1 7.9716 3.9751 -0.0044 12 1 6.1519 5.0244 -1.2166 13 7 2.0183 -0.6905 1.1962 14 6 1.7790 -0.1735 2.4176 15 8 1.0802 0.8110 2.5332 16 6 2.3798 -0.8186 3.6398 17 6 1.9559 -0.0411 4.8875 18 6 2.5563 -0.6867 6.1098 19 6 3.7429 -0.3806 6.6366 20 6 4.0858 -1.1076 7.7635 21 6 3.1773 -2.0038 8.1522 22 16 1.7958 -1.9527 7.0650 23 6 2.0400 -0.7212 -1.2491 24 6 3.1742 -1.7321 -1.0683 25 6 1.7548 -2.2199 -1.3656 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3635 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 1.6765 1.9564 -0.8901 30 1 1.6765 1.9565 0.8899 31 1 3.9899 0.6026 -0.0006 32 1 7.2058 1.4888 -0.0027 33 1 2.5138 -1.5198 1.1092 34 1 2.0298 -1.8481 3.7164 35 1 3.4667 -0.8095 3.5583 36 1 2.3062 0.9882 4.8107 37 1 0.8690 -0.0500 4.9692 38 1 4.3875 0.3768 6.2156 39 1 5.0178 -0.9600 8.2888 40 1 3.2734 -2.6573 9.0066 41 1 2.0307 -0.1343 -2.1676 42 1 3.9109 -1.8102 -1.8676 43 1 3.5574 -1.8832 -0.0591 44 1 1.2041 -2.6921 -0.5520 45 1 1.5579 -2.6189 -2.3606 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753527158.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:22 Heat of formation + Delta-G solvation = 14.744240 kcal Electronic energy + Delta-G solvation = -25395.377921 eV Core-core repulsion = 21925.968467 eV Total energy + Delta-G solvation = -3469.409453 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.47544 -39.22693 -38.60830 -36.26808 -34.84851 -34.62036 -33.08362 -31.61921 -29.54855 -27.46388 -26.11165 -24.80249 -23.91689 -23.40444 -23.11259 -21.53158 -20.22225 -20.09889 -19.12091 -18.64267 -17.74216 -17.00921 -16.64242 -16.32996 -16.23049 -15.91031 -15.41669 -15.37918 -15.10208 -14.61474 -14.13165 -14.01163 -13.86696 -13.79339 -13.61697 -13.28981 -13.19821 -12.95454 -12.87079 -12.84982 -12.72696 -12.48646 -12.29121 -12.21001 -12.03165 -11.99012 -11.76534 -11.61554 -11.11666 -11.01193 -10.94684 -10.51676 -9.85733 -9.55590 -9.36240 -8.89919 -7.92641 -5.17847 0.07478 0.72282 1.10187 1.44493 1.46791 1.52861 1.77057 1.83690 2.32969 2.56453 2.96324 3.39260 3.59728 3.71702 3.85055 3.95691 4.00590 4.09569 4.11419 4.23661 4.29806 4.35158 4.49662 4.60921 4.68821 4.70715 4.71821 4.79471 4.86393 4.89798 4.91360 4.98155 5.06970 5.09414 5.22193 5.26001 5.27349 5.32094 5.38245 5.42222 5.49055 5.59590 5.75949 6.30088 6.68812 7.37900 7.40664 8.14468 8.45607 9.29855 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.009553 B = 0.004082 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2930.335268 B = 6857.102944 C = 8762.278172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.207 3.793 3 C 0.141 3.859 4 N -0.728 5.728 5 C -0.245 4.245 6 H 0.060 0.940 7 C -0.066 4.066 8 N -0.960 5.960 9 Si 0.964 3.036 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.280 1.280 13 N -0.710 5.710 14 C 0.515 3.485 15 O -0.570 6.570 16 C -0.126 4.126 17 C -0.025 4.025 18 C -0.183 4.183 19 C -0.152 4.152 20 C -0.143 4.143 21 C -0.212 4.212 22 S 0.103 5.897 23 C -0.159 4.159 24 C -0.182 4.182 25 C -0.146 4.146 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.015 0.985 30 H 0.024 0.976 31 H 0.382 0.618 32 H 0.250 0.750 33 H 0.406 0.594 34 H 0.118 0.882 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.133 0.867 39 H 0.156 0.844 40 H 0.189 0.811 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.109 0.891 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.828 -14.008 10.040 19.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.121 3.879 3 C 0.013 3.987 4 N -0.371 5.371 5 C -0.377 4.377 6 H 0.078 0.922 7 C -0.258 4.258 8 N -0.611 5.611 9 Si 0.794 3.206 10 H -0.212 1.212 11 H -0.216 1.216 12 H -0.207 1.207 13 N -0.365 5.365 14 C 0.303 3.697 15 O -0.449 6.449 16 C -0.167 4.167 17 C -0.065 4.065 18 C -0.300 4.300 19 C -0.183 4.183 20 C -0.173 4.173 21 C -0.348 4.348 22 S 0.366 5.634 23 C -0.178 4.178 24 C -0.219 4.219 25 C -0.182 4.182 26 H 0.096 0.904 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.033 0.967 30 H 0.042 0.958 31 H 0.215 0.785 32 H 0.059 0.941 33 H 0.245 0.755 34 H 0.136 0.864 35 H 0.111 0.889 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.151 0.849 39 H 0.174 0.826 40 H 0.207 0.793 41 H 0.119 0.881 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.127 0.873 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.660 -13.920 10.043 20.750 hybrid contribution 2.744 1.553 -0.144 3.156 sum -8.916 -12.367 9.899 18.178 Atomic orbital electron populations 1.22001 0.92631 1.03021 1.02582 1.19869 0.94285 0.90408 0.83367 1.21160 0.84542 0.95271 0.97700 1.42271 1.00619 1.05186 1.89034 1.19503 0.89716 0.87229 1.41294 0.92159 1.25352 0.96952 0.99675 1.03862 1.69772 1.06485 1.25374 1.59457 0.85352 0.77486 0.79896 0.77866 1.21184 1.21628 1.20681 1.46151 1.57760 1.27518 1.05066 1.20901 0.79767 0.83686 0.85346 1.90613 1.39889 1.27469 1.86958 1.21635 1.02482 1.01608 0.90937 1.19690 1.00504 0.98037 0.88226 1.24493 0.99494 1.03489 1.02535 1.20409 0.96878 1.02942 0.98030 1.20372 1.01956 0.97310 0.97666 1.25952 0.97365 1.05866 1.05580 1.84118 1.21318 1.35915 1.22042 1.22284 1.04861 0.92664 0.97947 1.22905 0.92500 1.03879 1.02655 1.23091 0.96994 0.93890 1.04255 0.90414 0.92632 0.91186 0.96750 0.95767 0.78461 0.94068 0.75538 0.86357 0.88871 0.91500 0.90195 0.84873 0.82607 0.79341 0.88058 0.89234 0.89063 0.87313 0.87003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.07 8.37 71.98 0.60 -3.46 16 2 C 0.21 6.79 0.52 3.60 0.00 6.79 16 3 C 0.14 6.23 4.89 86.38 0.42 6.65 16 4 N -0.73 -37.82 5.22 -343.44 -1.79 -39.62 16 5 C -0.25 -14.33 9.99 84.03 0.84 -13.49 16 6 H 0.06 3.52 7.83 -2.91 -0.02 3.49 16 7 C -0.07 -3.83 5.50 84.86 0.47 -3.37 16 8 N -0.96 -58.07 13.06 21.65 0.28 -57.79 16 9 Si 0.96 47.43 29.55 68.60 2.03 49.46 16 10 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 11 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 12 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 13 N -0.71 -21.67 4.49 -422.94 -1.90 -23.57 16 14 C 0.52 17.15 7.24 87.66 0.63 17.78 16 15 O -0.57 -22.96 12.22 -3.04 -0.04 -23.00 16 16 C -0.13 -3.33 5.68 29.85 0.17 -3.16 16 17 C -0.02 -0.67 5.00 29.85 0.15 -0.52 16 18 C -0.18 -4.41 5.76 24.59 0.14 -4.27 16 19 C -0.15 -3.66 10.05 21.22 0.21 -3.45 16 20 C -0.14 -2.80 10.18 21.22 0.22 -2.58 16 21 C -0.21 -3.63 11.23 66.72 0.75 -2.88 16 22 S 0.10 1.99 23.33 -56.49 -1.32 0.67 16 23 C -0.16 -4.67 4.48 -10.79 -0.05 -4.71 16 24 C -0.18 -5.05 8.98 30.60 0.27 -4.78 16 25 C -0.15 -3.03 9.53 30.60 0.29 -2.74 16 26 H 0.08 1.78 7.72 -2.39 -0.02 1.76 16 27 H 0.05 1.81 6.37 -2.39 -0.02 1.79 16 28 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 29 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.02 1.21 5.99 -2.39 -0.01 1.20 16 31 H 0.38 20.05 6.43 -92.71 -0.60 19.45 16 32 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 33 H 0.41 10.49 5.64 -92.71 -0.52 9.97 16 34 H 0.12 2.35 8.14 -2.38 -0.02 2.33 16 35 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.07 2.14 8.10 -2.39 -0.02 2.12 16 37 H 0.08 2.13 8.10 -2.38 -0.02 2.11 16 38 H 0.13 3.34 8.06 -2.91 -0.02 3.32 16 39 H 0.16 2.40 8.06 -2.91 -0.02 2.37 16 40 H 0.19 2.08 8.06 -2.91 -0.02 2.05 16 41 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 42 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 43 H 0.09 2.56 5.96 -2.39 -0.01 2.54 16 44 H 0.11 1.91 7.99 -2.39 -0.02 1.89 16 45 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -70.34 376.20 2.27 -68.07 By element: Atomic # 1 Polarization: 44.10 SS G_CDS: -0.12 Total: 43.98 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: 5.12 Total: -18.20 kcal Atomic # 7 Polarization: -117.56 SS G_CDS: -3.41 Total: -120.97 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.04 Total: -23.00 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -1.32 Total: 0.67 kcal Total: -70.34 2.27 -68.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753527158.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.814 kcal (2) G-P(sol) polarization free energy of solvation -70.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds