Wall clock time and date at job start Tue Mar 31 2020 14:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47231 * 2 1 4 4 S 1.81401 * 109.46890 * 119.99963 * 2 1 3 5 5 C 1.81403 * 102.99992 * 174.99958 * 4 2 1 6 6 C 1.50698 * 109.46980 * 179.97438 * 5 4 2 7 7 O 1.21278 * 120.00396 * 0.02562 * 6 5 4 8 8 N 1.34782 * 119.99930 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00156 * 180.02562 * 8 6 5 10 10 C 1.50695 * 109.47150 * 179.97438 * 9 8 6 11 11 C 1.38238 * 119.99830 * 89.99855 * 10 9 8 12 12 C 1.38238 * 120.00072 * 180.02562 * 11 10 9 13 13 C 1.38241 * 119.99590 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.99576 * 179.97438 * 13 12 11 15 15 N 1.46499 * 109.46992 * 89.99874 * 14 13 12 16 16 C 1.36936 * 120.00002 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00140 * 0.02562 * 16 15 14 18 18 C 1.38811 * 120.00367 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99972 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00444 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46864 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47259 * 119.99588 * 20 18 16 23 23 H 1.48495 * 109.47205 * 239.99955 * 20 18 16 24 24 C 1.38233 * 120.00269 * 0.24973 * 13 12 11 25 25 C 1.38230 * 120.00174 * 270.02349 * 10 9 8 26 26 H 1.08994 * 109.47263 * 300.00522 * 1 2 3 27 27 H 1.09001 * 109.46852 * 60.00416 * 1 2 3 28 28 H 1.08993 * 109.47360 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47194 * 239.99465 * 2 1 3 30 30 H 1.09001 * 109.46863 * 299.99577 * 3 2 1 31 31 H 1.08994 * 109.47423 * 59.99576 * 3 2 1 32 32 H 1.09002 * 109.47311 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46809 * 59.99848 * 5 4 2 34 34 H 1.09001 * 109.47156 * 300.00012 * 5 4 2 35 35 H 0.97002 * 119.99536 * 359.97438 * 8 6 5 36 36 H 1.09001 * 109.46732 * 59.99827 * 9 8 6 37 37 H 1.09001 * 109.47244 * 299.99979 * 9 8 6 38 38 H 1.08002 * 119.99952 * 0.02562 * 11 10 9 39 39 H 1.07991 * 120.00062 * 179.97438 * 12 11 10 40 40 H 1.09002 * 109.47060 * 210.00086 * 14 13 12 41 41 H 1.09001 * 109.47380 * 330.00174 * 14 13 12 42 42 H 0.97000 * 120.00420 * 0.02562 * 15 14 13 43 43 H 0.96996 * 120.00586 * 180.02562 * 19 18 16 44 44 H 1.08003 * 119.99927 * 179.72604 * 24 13 12 45 45 H 1.08000 * 120.00286 * 359.97438 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1346 -0.8551 1.4812 5 6 3.9307 -0.8875 1.2291 6 6 4.5893 -1.5774 2.3958 7 8 3.9136 -2.0056 3.3073 8 7 5.9294 -1.7187 2.4262 9 6 6.5696 -2.3899 3.5601 10 6 8.0617 -2.4166 3.3508 11 6 8.8444 -1.3786 3.8209 12 6 10.2130 -1.4029 3.6284 13 6 10.7990 -2.4649 2.9653 14 6 12.2910 -2.4911 2.7549 15 7 12.9322 -3.1626 3.8881 16 6 14.2937 -3.3066 3.9176 17 1 14.8948 -2.9247 3.1056 18 6 14.9013 -3.9433 4.9910 19 7 14.1688 -4.4083 5.9808 20 14 16.7585 -4.1391 5.0316 21 1 17.3468 -3.5346 3.8094 22 1 17.3021 -3.4561 6.2329 23 1 17.1031 -5.5825 5.0843 24 6 10.0157 -3.5001 2.4901 25 6 8.6478 -3.4788 2.6882 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 4.3052 0.1333 1.1524 34 1 4.1590 -1.4282 0.3106 35 1 6.4698 -1.3765 1.6970 36 1 6.1954 -3.4108 3.6365 37 1 6.3409 -1.8494 4.4787 38 1 8.3865 -0.5487 4.3386 39 1 10.8244 -0.5918 3.9953 40 1 12.5190 -3.0313 1.8360 41 1 12.6652 -1.4702 2.6785 42 1 12.3924 -3.5059 4.6172 43 1 14.5933 -4.8529 6.7311 44 1 10.4731 -4.3277 1.9682 45 1 8.0364 -4.2898 2.3208 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753598094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:15 Heat of formation + Delta-G solvation = -12.652104 kcal Electronic energy + Delta-G solvation = -22977.864937 eV Core-core repulsion = 19507.267489 eV Total energy + Delta-G solvation = -3470.597448 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.05653 -39.08868 -35.61283 -35.22915 -34.37377 -32.28311 -30.94022 -30.76264 -29.73985 -27.72157 -26.75377 -24.34180 -22.53464 -22.52762 -22.31050 -20.92127 -20.48771 -17.74145 -17.30908 -16.91365 -16.44429 -16.07543 -15.53578 -15.26964 -15.13909 -14.84075 -14.57839 -14.56106 -14.02874 -13.77304 -13.45365 -13.40737 -13.25136 -13.19596 -12.78311 -12.59768 -12.41064 -12.07547 -11.97434 -11.88368 -11.79543 -11.67427 -11.10957 -10.90209 -10.77709 -10.62555 -10.30296 -10.13440 -10.06124 -9.81161 -9.37024 -8.94166 -8.73442 -8.48827 -8.01595 -6.97841 -5.79773 -3.09962 1.02580 1.38535 1.59617 2.11316 2.28973 2.99584 3.41135 3.46481 3.49047 3.94991 4.25966 4.33180 4.40311 4.53865 4.58631 4.64593 4.72622 4.76160 4.91624 5.07275 5.14670 5.16138 5.24026 5.28885 5.33209 5.33549 5.53658 5.55120 5.62320 5.64215 5.69917 5.80993 6.08579 6.11012 6.12601 6.16599 6.44404 6.54155 6.58531 6.65009 7.05822 7.14206 7.18555 7.66153 7.87138 8.37755 9.49501 10.05175 10.40814 11.42683 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.043645 B = 0.001655 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.381304 B =16915.422755 C =17171.568987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.082 4.082 3 C -0.149 4.149 4 S -0.179 6.179 5 C -0.130 4.130 6 C 0.528 3.472 7 O -0.520 6.520 8 N -0.720 5.720 9 C 0.167 3.833 10 C -0.126 4.126 11 C -0.103 4.103 12 C -0.106 4.106 13 C -0.063 4.063 14 C 0.184 3.816 15 N -0.727 5.727 16 C -0.244 4.244 17 H 0.072 0.928 18 C -0.012 4.012 19 N -0.931 5.931 20 Si 0.908 3.092 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.107 4.107 25 C -0.103 4.103 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.403 0.597 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.386 0.614 43 H 0.255 0.745 44 H 0.124 0.876 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.260 10.598 -14.433 30.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.211 4.211 3 C -0.208 4.208 4 S 0.047 5.953 5 C -0.281 4.281 6 C 0.312 3.688 7 O -0.395 6.395 8 N -0.373 5.373 9 C 0.044 3.956 10 C -0.126 4.126 11 C -0.122 4.122 12 C -0.125 4.125 13 C -0.064 4.064 14 C 0.057 3.943 15 N -0.371 5.371 16 C -0.374 4.374 17 H 0.090 0.910 18 C -0.208 4.208 19 N -0.579 5.579 20 Si 0.739 3.261 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.125 4.125 25 C -0.122 4.122 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.237 0.763 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.137 0.863 39 H 0.142 0.858 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.220 0.780 43 H 0.065 0.935 44 H 0.142 0.858 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -26.150 9.875 -12.953 30.808 hybrid contribution 2.061 0.346 -1.060 2.344 sum -24.088 10.221 -14.013 29.683 Atomic orbital electron populations 1.21568 0.91539 1.03114 1.02818 1.23265 1.00187 0.98866 0.98776 1.22111 1.01027 0.94567 1.03094 1.87565 1.01133 1.76595 1.30024 1.23513 0.97713 1.05215 1.01625 1.19664 0.82395 0.79741 0.87012 1.90769 1.62949 1.48295 1.37493 1.46043 1.06256 1.60250 1.24725 1.20187 0.88289 0.98226 0.88849 1.19657 0.94011 0.96470 1.02494 1.20998 0.93803 0.97838 0.99525 1.21130 0.94298 0.98785 0.98283 1.20404 0.97055 0.93523 0.95386 1.19712 0.85672 0.96544 0.92376 1.42341 1.04498 1.68900 1.21372 1.19286 0.83018 1.31227 1.03920 0.90995 1.24766 0.97959 1.01126 0.96971 1.69681 1.34037 1.43896 1.10263 0.86099 0.85266 0.77396 0.77304 1.20503 1.21804 1.21810 1.21132 0.93147 0.98257 0.99977 1.20995 0.94977 0.97585 0.98599 0.91563 0.91078 0.91547 0.89534 0.91725 0.91179 0.92623 0.87188 0.87242 0.76268 0.90554 0.90543 0.86296 0.85774 0.95387 0.95382 0.78043 0.93474 0.85775 0.86298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.67 9.20 37.16 0.34 -0.33 16 2 C -0.08 -0.48 3.38 -26.73 -0.09 -0.57 16 3 C -0.15 -0.71 9.10 37.16 0.34 -0.37 16 4 S -0.18 -1.65 20.29 -107.50 -2.18 -3.83 16 5 C -0.13 -0.94 6.12 36.00 0.22 -0.72 16 6 C 0.53 5.52 7.85 -10.98 -0.09 5.43 16 7 O -0.52 -7.69 15.86 5.56 0.09 -7.60 16 8 N -0.72 -6.42 5.55 -61.47 -0.34 -6.76 16 9 C 0.17 1.78 5.80 -5.20 -0.03 1.75 16 10 C -0.13 -1.49 5.25 -104.63 -0.55 -2.04 16 11 C -0.10 -1.30 9.70 -39.58 -0.38 -1.68 16 12 C -0.11 -1.59 9.70 -39.58 -0.38 -1.98 16 13 C -0.06 -1.05 5.25 -104.62 -0.55 -1.60 16 14 C 0.18 3.67 6.39 -5.19 -0.03 3.63 16 15 N -0.73 -18.42 5.59 -61.08 -0.34 -18.76 16 16 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 17 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 19 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 20 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 C -0.11 -1.60 9.70 -39.58 -0.38 -1.98 16 25 C -0.10 -1.30 9.70 -39.58 -0.38 -1.68 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.43 8.14 -51.92 -0.42 0.01 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.25 6.92 -51.93 -0.36 -0.11 16 33 H 0.11 0.58 7.14 -51.92 -0.37 0.21 16 34 H 0.11 0.58 8.14 -51.92 -0.42 0.15 16 35 H 0.40 2.70 8.46 -40.82 -0.35 2.36 16 36 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 37 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 38 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.12 1.82 8.06 -52.49 -0.42 1.39 16 40 H 0.03 0.55 8.08 -51.93 -0.42 0.13 16 41 H 0.03 0.55 8.09 -51.93 -0.42 0.13 16 42 H 0.39 10.46 7.66 -40.82 -0.31 10.15 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.12 1.81 8.06 -52.48 -0.42 1.39 16 45 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 391.75 15.07 5.90 5.90 Total: -1.00 -33.39 391.75 -10.66 -44.05 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -7.26 Total: 6.78 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -2.22 Total: -9.52 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: 0.04 Total: -53.02 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: 0.09 Total: -7.60 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.18 Total: -3.83 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.39 -10.66 -44.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753598094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.394 kcal (2) G-P(sol) polarization free energy of solvation -33.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds