Wall clock time and date at job start Tue Mar 31 2020 14:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47231 * 2 1 4 4 S 1.81401 * 109.46890 * 119.99963 * 2 1 3 5 5 C 1.81403 * 102.99992 * 174.99958 * 4 2 1 6 6 C 1.50698 * 109.46980 * 179.97438 * 5 4 2 7 7 O 1.21278 * 120.00396 * 0.02562 * 6 5 4 8 8 N 1.34782 * 119.99930 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00156 * 180.02562 * 8 6 5 10 10 C 1.50695 * 109.47150 * 179.97438 * 9 8 6 11 11 C 1.38238 * 119.99830 * 89.99855 * 10 9 8 12 12 C 1.38238 * 120.00072 * 180.02562 * 11 10 9 13 13 C 1.38241 * 119.99590 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.99576 * 179.97438 * 13 12 11 15 15 N 1.46499 * 109.46992 * 89.99874 * 14 13 12 16 16 C 1.36936 * 120.00002 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00140 * 0.02562 * 16 15 14 18 18 C 1.38811 * 120.00367 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99972 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00444 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46864 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47259 * 119.99588 * 20 18 16 23 23 H 1.48495 * 109.47205 * 239.99955 * 20 18 16 24 24 C 1.38233 * 120.00269 * 0.24973 * 13 12 11 25 25 C 1.38230 * 120.00174 * 270.02349 * 10 9 8 26 26 H 1.08994 * 109.47263 * 300.00522 * 1 2 3 27 27 H 1.09001 * 109.46852 * 60.00416 * 1 2 3 28 28 H 1.08993 * 109.47360 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47194 * 239.99465 * 2 1 3 30 30 H 1.09001 * 109.46863 * 299.99577 * 3 2 1 31 31 H 1.08994 * 109.47423 * 59.99576 * 3 2 1 32 32 H 1.09002 * 109.47311 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46809 * 59.99848 * 5 4 2 34 34 H 1.09001 * 109.47156 * 300.00012 * 5 4 2 35 35 H 0.97002 * 119.99536 * 359.97438 * 8 6 5 36 36 H 1.09001 * 109.46732 * 59.99827 * 9 8 6 37 37 H 1.09001 * 109.47244 * 299.99979 * 9 8 6 38 38 H 1.08002 * 119.99952 * 0.02562 * 11 10 9 39 39 H 1.07991 * 120.00062 * 179.97438 * 12 11 10 40 40 H 1.09002 * 109.47060 * 210.00086 * 14 13 12 41 41 H 1.09001 * 109.47380 * 330.00174 * 14 13 12 42 42 H 0.97000 * 120.00420 * 0.02562 * 15 14 13 43 43 H 0.96996 * 120.00586 * 180.02562 * 19 18 16 44 44 H 1.08003 * 119.99927 * 179.72604 * 24 13 12 45 45 H 1.08000 * 120.00286 * 359.97438 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1346 -0.8551 1.4812 5 6 3.9307 -0.8875 1.2291 6 6 4.5893 -1.5774 2.3958 7 8 3.9136 -2.0056 3.3073 8 7 5.9294 -1.7187 2.4262 9 6 6.5696 -2.3899 3.5601 10 6 8.0617 -2.4166 3.3508 11 6 8.8444 -1.3786 3.8209 12 6 10.2130 -1.4029 3.6284 13 6 10.7990 -2.4649 2.9653 14 6 12.2910 -2.4911 2.7549 15 7 12.9322 -3.1626 3.8881 16 6 14.2937 -3.3066 3.9176 17 1 14.8948 -2.9247 3.1056 18 6 14.9013 -3.9433 4.9910 19 7 14.1688 -4.4083 5.9808 20 14 16.7585 -4.1391 5.0316 21 1 17.3468 -3.5346 3.8094 22 1 17.3021 -3.4561 6.2329 23 1 17.1031 -5.5825 5.0843 24 6 10.0157 -3.5001 2.4901 25 6 8.6478 -3.4788 2.6882 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 4.3052 0.1333 1.1524 34 1 4.1590 -1.4282 0.3106 35 1 6.4698 -1.3765 1.6970 36 1 6.1954 -3.4108 3.6365 37 1 6.3409 -1.8494 4.4787 38 1 8.3865 -0.5487 4.3386 39 1 10.8244 -0.5918 3.9953 40 1 12.5190 -3.0313 1.8360 41 1 12.6652 -1.4702 2.6785 42 1 12.3924 -3.5059 4.6172 43 1 14.5933 -4.8529 6.7311 44 1 10.4731 -4.3277 1.9682 45 1 8.0364 -4.2898 2.3208 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753598094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:15 Heat of formation + Delta-G solvation = -33.083847 kcal Electronic energy + Delta-G solvation = -22978.750924 eV Core-core repulsion = 19507.267489 eV Total energy + Delta-G solvation = -3471.483435 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.97508 -40.15039 -36.96220 -35.81897 -35.60615 -33.79874 -32.22599 -31.85634 -30.86341 -28.33614 -27.88091 -25.88766 -24.10252 -23.63102 -22.86587 -21.73221 -21.65487 -19.33676 -18.50532 -17.68039 -17.19819 -16.94965 -16.79268 -16.38874 -16.26508 -15.90806 -15.69167 -15.25189 -15.14914 -14.95081 -14.65655 -14.51507 -14.34388 -14.08606 -13.73717 -13.70630 -13.26163 -13.11200 -13.10398 -13.00049 -12.80499 -12.42723 -12.20637 -12.15952 -12.08719 -11.95936 -11.91618 -11.73252 -11.19612 -11.00571 -10.66628 -10.20766 -9.82453 -9.65303 -9.04174 -8.68875 -7.96762 -5.27156 0.20193 0.50079 0.52977 1.47450 1.48243 1.50834 1.58565 1.58924 2.19122 2.54847 2.87605 3.36797 3.62366 3.73993 3.87469 3.88770 3.96308 4.04155 4.06344 4.13355 4.23760 4.24980 4.28348 4.35957 4.56013 4.68324 4.69138 4.73952 4.80128 4.86840 4.89364 4.89424 4.97767 5.06837 5.19506 5.25916 5.27912 5.29134 5.45322 5.47254 5.59134 5.80971 6.05633 6.24060 6.42981 7.12592 7.30781 8.03816 8.28590 9.26706 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.043645 B = 0.001655 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.381304 B =16915.422755 C =17171.568987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.064 4.064 3 C -0.148 4.148 4 S -0.258 6.258 5 C -0.112 4.112 6 C 0.526 3.474 7 O -0.568 6.568 8 N -0.707 5.707 9 C 0.173 3.827 10 C -0.109 4.109 11 C -0.097 4.097 12 C -0.116 4.116 13 C -0.087 4.087 14 C 0.185 3.815 15 N -0.740 5.740 16 C -0.248 4.248 17 H 0.079 0.921 18 C -0.074 4.074 19 N -0.970 5.970 20 Si 0.976 3.024 21 H -0.264 1.264 22 H -0.293 1.293 23 H -0.293 1.293 24 C -0.116 4.116 25 C -0.097 4.097 26 H 0.057 0.943 27 H 0.091 0.909 28 H 0.059 0.941 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.417 0.583 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.142 0.858 39 H 0.122 0.878 40 H 0.031 0.969 41 H 0.031 0.969 42 H 0.373 0.627 43 H 0.251 0.749 44 H 0.122 0.878 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.842 11.706 -16.406 32.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.193 4.193 3 C -0.207 4.207 4 S -0.032 6.032 5 C -0.262 4.262 6 C 0.312 3.688 7 O -0.447 6.447 8 N -0.360 5.360 9 C 0.049 3.951 10 C -0.110 4.110 11 C -0.116 4.116 12 C -0.134 4.134 13 C -0.087 4.087 14 C 0.059 3.941 15 N -0.382 5.382 16 C -0.380 4.380 17 H 0.097 0.903 18 C -0.267 4.267 19 N -0.620 5.620 20 Si 0.805 3.195 21 H -0.188 1.188 22 H -0.220 1.220 23 H -0.220 1.220 24 C -0.134 4.134 25 C -0.116 4.116 26 H 0.076 0.924 27 H 0.110 0.890 28 H 0.078 0.922 29 H 0.117 0.883 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.254 0.746 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.160 0.840 39 H 0.140 0.860 40 H 0.049 0.951 41 H 0.049 0.951 42 H 0.205 0.795 43 H 0.060 0.940 44 H 0.140 0.860 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -26.716 11.023 -14.999 32.561 hybrid contribution 2.122 0.052 -0.522 2.186 sum -24.595 11.075 -15.521 31.120 Atomic orbital electron populations 1.21603 0.91280 1.02871 1.03355 1.23297 1.00227 0.99009 0.96725 1.22105 1.01456 0.93718 1.03377 1.87867 1.03979 1.77865 1.33511 1.23447 0.95358 1.06536 1.00887 1.20174 0.82393 0.79055 0.87208 1.90757 1.64012 1.50395 1.39492 1.45873 1.06030 1.59552 1.24535 1.20043 0.87256 0.98332 0.89441 1.19756 0.94563 0.95668 1.00980 1.21198 0.92793 0.98645 0.98935 1.21179 0.95446 0.98402 0.98411 1.20176 0.95239 0.95347 0.97951 1.19779 0.87956 0.95797 0.90561 1.42549 1.03900 1.69285 1.22477 1.19719 0.84467 1.30033 1.03746 0.90292 1.25608 1.02501 1.01645 0.96915 1.69841 1.35794 1.45388 1.10985 0.85035 0.79929 0.76963 0.77580 1.18798 1.22016 1.22023 1.21180 0.94165 0.97790 1.00304 1.21197 0.94113 0.98294 0.97974 0.92397 0.89033 0.92231 0.88267 0.90124 0.92131 0.91971 0.84738 0.84668 0.74631 0.90846 0.90834 0.84033 0.86015 0.95115 0.95109 0.79530 0.93976 0.86008 0.84039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 9.20 71.98 0.66 -0.51 16 2 C -0.06 -0.62 3.38 30.59 0.10 -0.51 16 3 C -0.15 -1.05 9.10 71.98 0.66 -0.40 16 4 S -0.26 -4.56 20.29 -56.49 -1.15 -5.70 16 5 C -0.11 -1.35 6.12 71.24 0.44 -0.92 16 6 C 0.53 10.09 7.85 87.66 0.69 10.77 16 7 O -0.57 -16.58 15.86 -3.02 -0.05 -16.63 16 8 N -0.71 -10.80 5.55 -466.79 -2.59 -13.39 16 9 C 0.17 3.31 5.80 85.63 0.50 3.81 16 10 C -0.11 -2.34 5.25 -19.87 -0.10 -2.44 16 11 C -0.10 -2.26 9.70 22.27 0.22 -2.04 16 12 C -0.12 -3.37 9.70 22.27 0.22 -3.16 16 13 C -0.09 -2.86 5.25 -19.86 -0.10 -2.97 16 14 C 0.18 7.41 6.39 85.63 0.55 7.96 16 15 N -0.74 -38.03 5.59 -347.17 -1.94 -39.97 16 16 C -0.25 -13.89 9.99 84.03 0.84 -13.05 16 17 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 18 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 19 N -0.97 -59.89 13.06 21.65 0.28 -59.61 16 20 Si 0.98 46.02 29.55 68.60 2.03 48.04 16 21 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 22 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 23 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 24 C -0.12 -3.37 9.70 22.27 0.22 -3.16 16 25 C -0.10 -2.26 9.70 22.27 0.22 -2.05 16 26 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.36 6.92 -2.39 -0.02 0.35 16 33 H 0.13 0.98 7.14 -2.39 -0.02 0.96 16 34 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.42 4.19 8.46 -92.71 -0.78 3.41 16 36 H 0.07 1.51 8.09 -2.39 -0.02 1.49 16 37 H 0.07 1.51 8.09 -2.39 -0.02 1.49 16 38 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 39 H 0.12 3.53 8.06 -2.92 -0.02 3.50 16 40 H 0.03 1.21 8.08 -2.39 -0.02 1.19 16 41 H 0.03 1.22 8.09 -2.39 -0.02 1.20 16 42 H 0.37 20.74 7.66 -92.71 -0.71 20.03 16 43 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 44 H 0.12 3.52 8.06 -2.91 -0.02 3.50 16 45 H 0.14 2.65 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -73.55 391.75 1.63 -71.93 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: -0.51 Total: 27.82 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 5.55 Total: -12.49 kcal Atomic # 7 Polarization: -108.72 SS G_CDS: -4.25 Total: -112.97 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.05 Total: -16.63 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.04 kcal Atomic # 16 Polarization: -4.56 SS G_CDS: -1.15 Total: -5.70 kcal Total: -73.55 1.63 -71.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753598094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.845 kcal (2) G-P(sol) polarization free energy of solvation -73.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds