Wall clock time and date at job start Tue Mar 31 2020 13:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46830 * 2 1 4 4 C 1.50699 * 109.47574 * 239.99838 * 2 1 3 5 5 O 1.21282 * 120.00060 * 240.00299 * 4 2 1 6 6 N 1.34777 * 119.99710 * 59.99737 * 4 2 1 7 7 C 1.46505 * 120.00033 * 0.02562 * 6 4 2 8 8 C 1.46500 * 119.99807 * 179.97438 * 6 4 2 9 9 C 1.50703 * 109.47496 * 270.00138 * 8 6 4 10 10 H 1.07997 * 119.99773 * 0.02562 * 9 8 6 11 11 C 1.37871 * 120.00066 * 179.97438 * 9 8 6 12 12 N 1.31515 * 119.99851 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 119.99862 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47283 * 90.00301 * 13 11 9 15 15 H 1.48504 * 109.46956 * 210.00091 * 13 11 9 16 16 H 1.48494 * 109.47453 * 329.99888 * 13 11 9 17 17 N 1.46900 * 109.46674 * 119.99680 * 2 1 3 18 18 C 1.47837 * 111.00603 * 313.72136 * 17 2 1 19 19 C 1.54908 * 104.79769 * 213.63805 * 18 17 2 20 20 C 1.55134 * 101.65371 * 37.07034 * 19 18 17 21 21 C 1.47452 * 110.99691 * 192.87557 * 17 2 1 22 22 H 1.09001 * 109.88817 * 242.82510 * 21 17 2 23 23 C 1.50694 * 109.88845 * 3.85777 * 21 17 2 24 24 C 1.38426 * 122.53718 * 252.14382 * 23 21 17 25 25 C 1.33393 * 114.92131 * 179.76000 * 24 23 21 26 26 S 1.75887 * 109.58954 * 0.47677 * 25 24 23 27 27 C 1.33387 * 122.54422 * 72.42509 * 23 21 17 28 28 H 1.09011 * 109.46824 * 175.61411 * 1 2 3 29 29 H 1.09000 * 109.47801 * 295.61366 * 1 2 3 30 30 H 1.08997 * 109.47061 * 55.61618 * 1 2 3 31 31 H 1.08994 * 109.46905 * 269.99424 * 7 6 4 32 32 H 1.08994 * 109.47150 * 29.99547 * 7 6 4 33 33 H 1.09000 * 109.46675 * 149.99588 * 7 6 4 34 34 H 1.09006 * 109.46826 * 150.00363 * 8 6 4 35 35 H 1.08998 * 109.46967 * 30.00880 * 8 6 4 36 36 H 0.97000 * 119.99719 * 179.97438 * 12 11 9 37 37 H 1.09001 * 110.37094 * 332.46417 * 18 17 2 38 38 H 1.08993 * 110.37975 * 94.80581 * 18 17 2 39 39 H 1.09004 * 110.98963 * 278.97453 * 19 18 17 40 40 H 1.09008 * 110.98850 * 155.15885 * 19 18 17 41 41 H 1.09003 * 110.70635 * 205.96305 * 20 19 18 42 42 H 1.08999 * 110.85891 * 82.80107 * 20 19 18 43 43 H 1.08004 * 122.53912 * 359.97438 * 24 23 21 44 44 H 1.08006 * 125.20530 * 180.20189 * 25 24 23 45 45 H 1.07997 * 125.19880 * 0.03109 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7297 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 0.8649 0.9414 -2.5890 8 6 2.1957 -0.9403 -3.6506 9 6 3.5231 -0.3562 -4.0606 10 1 3.9591 0.4485 -3.4872 11 6 4.1813 -0.8497 -5.1669 12 7 5.3399 -0.3403 -5.5243 13 14 3.4274 -2.2419 -6.1583 14 1 2.5678 -1.6778 -7.2298 15 1 4.5084 -3.0569 -6.7686 16 1 2.6066 -3.0980 -5.2646 17 7 2.0196 -0.6924 1.1995 18 6 1.2968 -0.2374 2.4062 19 6 2.3479 -0.2960 3.5426 20 6 3.6341 0.1583 2.8036 21 6 3.4609 -0.4522 1.3970 22 1 4.0064 -1.3935 1.3289 23 6 3.9678 0.5105 0.3543 24 6 4.7808 0.1133 -0.6933 25 6 5.1361 1.0893 -1.5303 26 16 4.4363 2.6108 -0.9930 27 6 3.6715 1.8109 0.3739 28 1 -0.3633 -1.0248 -0.0786 29 1 -0.3635 0.4442 0.9266 30 1 -0.3633 0.5803 -0.8481 31 1 -0.1831 0.6438 -2.6222 32 1 1.0287 1.6002 -1.7362 33 1 1.1229 1.4666 -3.5086 34 1 1.4778 -0.8151 -4.4613 35 1 2.3171 -2.0015 -3.4335 36 1 5.8031 -0.6878 -6.3025 37 1 0.9397 0.7837 2.2721 38 1 0.4642 -0.9059 2.6246 39 1 2.4546 -1.3117 3.9237 40 1 2.0938 0.3960 4.3456 41 1 4.5216 -0.2441 3.2919 42 1 3.6861 1.2457 2.7481 43 1 5.1003 -0.9100 -0.8250 44 1 5.7618 0.9650 -2.4018 45 1 3.0564 2.2981 1.1159 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076989461.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:40 Heat of formation + Delta-G solvation = 40.463507 kcal Electronic energy + Delta-G solvation = -27515.133372 eV Core-core repulsion = 24046.839189 eV Total energy + Delta-G solvation = -3468.294182 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.69387 -38.21057 -36.54764 -34.75751 -33.46632 -32.30752 -30.24704 -29.23075 -27.96452 -27.44200 -26.05649 -24.25274 -23.49922 -22.02792 -20.69825 -20.16574 -18.59777 -18.01571 -17.28147 -16.82347 -16.49448 -15.85797 -15.60945 -14.96979 -14.68237 -14.16081 -14.09656 -13.45927 -13.39759 -13.07536 -12.93556 -12.56523 -12.35270 -12.32755 -12.12834 -12.06399 -11.91092 -11.64981 -11.60159 -11.46147 -11.12523 -11.09763 -11.04517 -10.86460 -10.80897 -10.59803 -10.46037 -10.27003 -10.04420 -9.44616 -8.80225 -8.54377 -8.16215 -8.00663 -7.77138 -7.51974 -6.04754 -4.00562 1.49388 2.16850 2.52314 3.21765 3.29444 3.38030 3.43672 3.61228 3.82309 4.36299 4.44779 4.68450 4.73222 4.90547 5.11253 5.20074 5.29160 5.32427 5.34716 5.44539 5.49563 5.54455 5.64591 5.77009 5.80329 5.82394 5.87684 5.89181 5.97002 6.00924 6.12191 6.16197 6.20968 6.30753 6.43774 6.73933 6.74997 7.00307 7.02372 7.07636 7.16636 7.23548 7.50546 7.69350 8.42884 8.55570 9.03044 9.22608 9.58757 11.07905 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015586 B = 0.005661 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.085820 B = 4945.146080 C = 5647.612924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.042 3.958 3 H 0.085 0.915 4 C 0.525 3.475 5 O -0.521 6.521 6 N -0.598 5.598 7 C 0.084 3.916 8 C 0.217 3.783 9 C -0.522 4.522 10 H 0.090 0.910 11 C 0.073 3.927 12 N -0.901 5.901 13 Si 0.868 3.132 14 H -0.278 1.278 15 H -0.286 1.286 16 H -0.265 1.265 17 N -0.493 5.493 18 C 0.041 3.959 19 C -0.129 4.129 20 C -0.136 4.136 21 C 0.139 3.861 22 H 0.097 0.903 23 C -0.097 4.097 24 C -0.112 4.112 25 C -0.160 4.160 26 S 0.070 5.930 27 C -0.240 4.240 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.020 0.980 35 H 0.038 0.962 36 H 0.262 0.738 37 H 0.045 0.955 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.142 0.858 44 H 0.172 0.828 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.641 5.817 15.367 18.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.069 4.069 3 H 0.102 0.898 4 C 0.311 3.689 5 O -0.396 6.396 6 N -0.331 5.331 7 C -0.060 4.060 8 C 0.096 3.904 9 C -0.561 4.561 10 H 0.107 0.893 11 C -0.129 4.129 12 N -0.541 5.541 13 Si 0.696 3.304 14 H -0.204 1.204 15 H -0.212 1.212 16 H -0.190 1.190 17 N -0.217 5.217 18 C -0.087 4.087 19 C -0.167 4.167 20 C -0.175 4.175 21 C 0.029 3.971 22 H 0.115 0.885 23 C -0.112 4.112 24 C -0.141 4.141 25 C -0.295 4.295 26 S 0.332 5.668 27 C -0.376 4.376 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.038 0.962 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.159 0.841 44 H 0.189 0.811 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -7.161 6.210 14.627 17.430 hybrid contribution -0.294 -1.211 -0.349 1.294 sum -7.456 4.999 14.278 16.865 Atomic orbital electron populations 1.22184 0.93585 1.03271 1.02671 1.22137 0.95789 0.98219 0.90800 0.89791 1.19847 0.80617 0.84860 0.83567 1.90612 1.36783 1.26273 1.85929 1.47681 1.50546 1.28266 1.06626 1.21752 0.93487 0.88266 1.02538 1.19615 0.95075 0.93964 0.81767 1.21564 1.02907 1.20033 1.11587 0.89250 1.24800 0.94746 0.96248 0.97086 1.69861 1.14937 1.42506 1.26755 0.86964 0.79352 0.83405 0.80710 1.20399 1.21219 1.18997 1.63739 1.02231 1.54714 1.00998 1.23110 0.97278 0.98742 0.89567 1.22700 0.94870 1.01961 0.97183 1.22975 0.98417 1.00863 0.95249 1.21123 0.88636 0.96644 0.90701 0.88533 1.19150 0.99784 0.93470 0.98771 1.20024 0.99217 1.00603 0.94223 1.25702 1.06027 0.93959 1.03853 1.84048 1.48279 1.12960 1.21480 1.25149 1.10197 0.97614 1.04657 0.91787 0.92004 0.90702 0.93769 0.92463 0.90913 0.96225 0.94366 0.92796 0.93718 0.90246 0.90589 0.91048 0.90710 0.91122 0.84056 0.81108 0.83133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 8.49 37.16 0.32 -1.74 16 2 C 0.04 0.67 1.15 -68.86 -0.08 0.59 16 3 H 0.08 1.30 3.69 -51.93 -0.19 1.11 16 4 C 0.53 10.66 5.03 -10.99 -0.06 10.61 16 5 O -0.52 -12.56 13.59 5.56 0.08 -12.48 16 6 N -0.60 -12.25 2.86 -182.95 -0.52 -12.78 16 7 C 0.08 1.34 8.80 59.85 0.53 1.87 16 8 C 0.22 5.24 4.23 -5.19 -0.02 5.22 16 9 C -0.52 -14.16 9.94 -34.44 -0.34 -14.51 16 10 H 0.09 2.51 5.50 -52.49 -0.29 2.22 16 11 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 12 N -0.90 -26.61 13.96 55.43 0.77 -25.83 16 13 Si 0.87 21.47 27.47 -169.99 -4.67 16.80 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 17 N -0.49 -7.44 4.69 -218.19 -1.02 -8.46 16 18 C 0.04 0.46 5.23 -2.30 -0.01 0.45 16 19 C -0.13 -1.26 7.08 -24.60 -0.17 -1.44 16 20 C -0.14 -1.55 6.38 -24.91 -0.16 -1.71 16 21 C 0.14 2.10 2.97 -67.87 -0.20 1.89 16 22 H 0.10 1.65 8.07 -51.93 -0.42 1.23 16 23 C -0.10 -1.59 2.75 -106.25 -0.29 -1.88 16 24 C -0.11 -2.19 7.56 -41.21 -0.31 -2.50 16 25 C -0.16 -3.15 9.15 29.04 0.27 -2.88 16 26 S 0.07 1.12 23.34 -107.50 -2.51 -1.39 16 27 C -0.24 -3.54 7.37 29.04 0.21 -3.33 16 28 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 29 H 0.06 0.65 6.16 -51.93 -0.32 0.33 16 30 H 0.07 0.89 4.66 -51.93 -0.24 0.65 16 31 H 0.04 0.60 7.05 -51.93 -0.37 0.23 16 32 H 0.06 0.81 5.96 -51.93 -0.31 0.50 16 33 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 34 H 0.02 0.46 7.50 -51.93 -0.39 0.07 16 35 H 0.04 1.02 6.48 -51.93 -0.34 0.68 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.04 0.46 6.87 -51.93 -0.36 0.11 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.78 6.36 -51.93 -0.33 0.45 16 43 H 0.14 3.08 7.72 -52.48 -0.41 2.67 16 44 H 0.17 3.76 7.82 -52.48 -0.41 3.35 16 45 H 0.15 1.88 7.28 -52.49 -0.38 1.50 16 LS Contribution 346.46 15.07 5.22 5.22 Total: -1.00 -31.32 346.46 -9.53 -40.84 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.45 Total: 5.49 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -0.43 Total: -7.42 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: -0.77 Total: -47.07 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.08 Total: -12.48 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.51 Total: -1.39 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.32 -9.53 -40.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076989461.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.306 kcal (2) G-P(sol) polarization free energy of solvation -31.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds