Wall clock time and date at job start Tue Mar 31 2020 13:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81398 * 102.99978 * 2 1 4 4 C 1.52997 * 109.47194 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47470 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.46878 * 55.00490 * 5 4 3 7 7 C 1.53000 * 109.46987 * 175.00111 * 5 4 3 8 8 N 1.46500 * 109.47249 * 295.00213 * 5 4 3 9 9 C 1.46501 * 119.99950 * 299.99837 * 8 5 4 10 10 C 1.34775 * 119.99780 * 119.99820 * 8 5 4 11 11 O 1.21582 * 120.00365 * 359.97438 * 10 8 5 12 12 N 1.34775 * 119.99662 * 180.02562 * 10 8 5 13 13 C 1.39243 * 119.99958 * 185.13262 * 12 10 8 14 14 C 1.39481 * 119.83726 * 214.20548 * 13 12 10 15 15 C 1.36367 * 120.17184 * 179.71439 * 14 13 12 16 16 C 1.40872 * 119.82725 * 0.58198 * 15 14 13 17 17 C 1.41160 * 120.16527 * 179.67192 * 16 15 14 18 18 H 1.07997 * 119.99725 * 205.37020 * 17 16 15 19 19 C 1.39895 * 119.99723 * 25.37469 * 17 16 15 20 20 N 1.30881 * 120.00248 * 16.81121 * 19 17 16 21 21 Si 1.86803 * 119.99856 * 196.81744 * 19 17 16 22 22 H 1.48499 * 109.46986 * 59.99614 * 21 19 17 23 23 H 1.48499 * 109.47010 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.46977 * 299.99770 * 21 19 17 25 25 C 1.40864 * 119.67119 * 359.69344 * 16 15 14 26 26 C 1.36376 * 119.82846 * 0.02562 * 25 16 15 27 27 H 1.09000 * 109.47183 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46828 * 299.99758 * 1 2 3 29 29 H 1.08998 * 109.47196 * 59.99585 * 1 2 3 30 30 H 1.09003 * 109.47201 * 60.00246 * 3 2 1 31 31 H 1.09002 * 109.47439 * 300.00134 * 3 2 1 32 32 H 1.09003 * 109.46922 * 59.99981 * 4 3 2 33 33 H 1.08997 * 109.47648 * 300.00476 * 4 3 2 34 34 H 1.09000 * 109.46914 * 180.02562 * 7 5 4 35 35 H 1.09000 * 109.47389 * 299.99615 * 7 5 4 36 36 H 1.08997 * 109.47479 * 60.00686 * 7 5 4 37 37 H 1.08992 * 109.46916 * 270.00190 * 9 8 5 38 38 H 1.09000 * 109.47123 * 29.99920 * 9 8 5 39 39 H 1.09002 * 109.46872 * 149.99745 * 9 8 5 40 40 H 0.97003 * 120.00262 * 5.13302 * 12 10 8 41 41 H 1.08006 * 119.91248 * 359.97438 * 14 13 12 42 42 H 1.08000 * 120.09110 * 180.25590 * 15 14 13 43 43 H 0.97000 * 119.99688 * 180.02562 * 20 19 17 44 44 H 1.08006 * 120.08635 * 179.97438 * 25 16 15 45 45 H 1.08000 * 119.91261 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 6 4.0866 3.4307 0.0000 6 1 3.5944 3.9168 0.8424 7 6 5.6015 3.6042 0.1251 8 7 3.6270 4.0386 -1.2512 9 6 4.1456 3.5562 -2.5337 10 6 2.7272 5.0416 -1.2224 11 8 2.2965 5.4416 -0.1582 12 7 2.3041 5.6004 -2.3736 13 6 1.4576 6.7055 -2.3410 14 6 0.4842 6.8633 -3.3275 15 6 -0.3523 7.9400 -3.2989 16 6 -0.2233 8.9006 -2.2766 17 6 -1.0808 10.0214 -2.2442 18 1 -0.7611 10.9319 -1.7594 19 6 -2.3447 9.9525 -2.8398 20 7 -2.8684 8.7890 -3.1312 21 14 -3.2850 11.5214 -3.2196 22 1 -2.4925 12.3592 -4.1551 23 1 -4.5876 11.1787 -3.8449 24 1 -3.5220 12.2733 -1.9611 25 6 0.7660 8.7373 -1.2872 26 6 1.5914 7.6524 -1.3257 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8032 2.2371 0.8900 31 1 1.8032 2.2372 -0.8900 32 1 4.1608 1.4704 -0.8909 33 1 4.1617 1.4702 0.8890 34 1 5.8467 4.6663 0.1260 35 1 5.9435 3.1521 1.0560 36 1 6.0937 3.1182 -0.7173 37 1 5.0389 4.1211 -2.7999 38 1 4.3961 2.4987 -2.4497 39 1 3.3876 3.6899 -3.3055 40 1 2.5892 5.2328 -3.2247 41 1 0.3899 6.1287 -4.1136 42 1 -1.1082 8.0587 -4.0610 43 1 -3.7446 8.7413 -3.5446 44 1 0.8710 9.4699 -0.5006 45 1 2.3506 7.5261 -0.5680 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077186017.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:19 Heat of formation + Delta-G solvation = -8.779678 kcal Electronic energy + Delta-G solvation = -24813.805334 eV Core-core repulsion = 21343.375807 eV Total energy + Delta-G solvation = -3470.429527 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.28030 -37.89434 -36.49282 -34.49247 -33.49939 -32.42544 -30.28343 -29.52112 -29.05933 -28.70035 -26.92956 -25.01426 -24.02490 -22.08046 -21.10304 -20.32424 -19.08589 -18.14103 -17.29388 -16.51253 -16.36465 -15.90014 -15.46412 -15.13067 -14.54189 -14.27709 -14.10925 -13.94234 -13.69326 -13.43471 -13.35380 -12.96079 -12.89070 -12.68079 -12.64770 -12.57677 -12.14208 -12.01565 -11.80552 -11.52229 -11.30982 -11.18629 -11.08892 -11.02949 -10.90462 -10.72591 -10.17528 -10.02902 -9.57211 -9.48364 -9.16644 -8.90409 -8.57112 -7.86565 -7.52035 -6.93772 -6.71539 -4.27484 1.52618 2.42181 2.66888 2.89237 3.06863 3.09262 3.11901 3.17344 3.68995 3.94266 4.29789 4.57238 4.65201 4.75924 4.85762 4.97190 4.98413 4.98791 5.17095 5.24211 5.35539 5.43892 5.50290 5.54548 5.57604 5.63092 5.71469 5.82840 5.95896 6.03687 6.20455 6.43281 6.54660 6.80435 6.89373 7.06091 7.12875 7.28527 7.35957 7.62960 7.87591 7.97220 8.06507 8.30647 8.45919 8.62136 8.90805 8.93322 9.12066 10.20280 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016554 B = 0.002791 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.038333 B =10029.289621 C =11058.651777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.280 6.280 3 C -0.075 4.075 4 C -0.112 4.112 5 C 0.157 3.843 6 H 0.105 0.895 7 C -0.158 4.158 8 N -0.633 5.633 9 C 0.079 3.921 10 C 0.696 3.304 11 O -0.577 6.577 12 N -0.666 5.666 13 C 0.012 3.988 14 C -0.116 4.116 15 C -0.152 4.152 16 C 0.104 3.896 17 C -0.459 4.459 18 H 0.077 0.923 19 C 0.075 3.925 20 N -0.795 5.795 21 Si 0.909 3.091 22 H -0.264 1.264 23 H -0.279 1.279 24 H -0.266 1.266 25 C -0.214 4.214 26 C -0.076 4.076 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.390 0.610 41 H 0.088 0.912 42 H 0.121 0.879 43 H 0.280 0.720 44 H 0.094 0.906 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.035 -14.430 0.867 18.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.054 6.054 3 C -0.223 4.223 4 C -0.151 4.151 5 C 0.051 3.949 6 H 0.123 0.877 7 C -0.217 4.217 8 N -0.372 5.372 9 C -0.065 4.065 10 C 0.398 3.602 11 O -0.454 6.454 12 N -0.313 5.313 13 C -0.081 4.081 14 C -0.137 4.137 15 C -0.172 4.172 16 C 0.102 3.898 17 C -0.489 4.489 18 H 0.095 0.905 19 C -0.143 4.143 20 N -0.421 5.421 21 Si 0.733 3.267 22 H -0.189 1.189 23 H -0.204 1.204 24 H -0.190 1.190 25 C -0.234 4.234 26 C -0.096 4.096 27 H 0.118 0.882 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.225 0.775 41 H 0.106 0.894 42 H 0.139 0.861 43 H 0.091 0.909 44 H 0.112 0.888 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 11.154 -15.130 1.556 18.861 hybrid contribution -1.324 1.336 -0.723 2.015 sum 9.830 -13.794 0.833 16.959 Atomic orbital electron populations 1.23355 0.93743 1.06249 1.05320 1.86625 1.08020 1.12564 1.98168 1.23362 1.00202 0.92983 1.05778 1.21743 0.93082 0.96722 1.03575 1.20889 0.94796 0.91626 0.87561 0.87661 1.22118 0.94882 1.02642 1.02053 1.47092 1.45776 1.37686 1.06638 1.21651 0.99223 1.00245 0.85391 1.15955 0.79715 0.79547 0.84955 1.90906 1.60407 1.64938 1.29134 1.42292 1.50549 1.31953 1.06471 1.16971 0.98185 0.89783 1.03120 1.20185 0.95659 0.99193 0.98621 1.20872 1.00115 0.96025 1.00161 1.17640 0.90686 0.92275 0.89231 1.19513 0.98662 0.99229 1.31502 0.90464 1.25907 0.97826 0.97284 0.93259 1.69842 1.15885 1.25348 1.30984 0.86364 0.78449 0.82168 0.79704 1.18856 1.20393 1.19025 1.20649 1.02425 0.99626 1.00739 1.20238 0.99170 0.93054 0.97143 0.88240 0.90370 0.90381 0.89806 0.89935 0.90723 0.89931 0.91921 0.91457 0.92407 0.92810 0.90916 0.91677 0.77477 0.89374 0.86127 0.90889 0.88779 0.88103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 10.76 101.05 1.09 -0.03 16 2 S -0.28 -3.09 22.38 -107.50 -2.41 -5.50 16 3 C -0.08 -0.86 5.83 37.16 0.22 -0.65 16 4 C -0.11 -1.06 4.64 -26.73 -0.12 -1.19 16 5 C 0.16 1.75 2.64 -67.93 -0.18 1.57 16 6 H 0.11 1.45 6.90 -51.93 -0.36 1.09 16 7 C -0.16 -1.40 9.19 37.16 0.34 -1.06 16 8 N -0.63 -8.05 2.21 -179.67 -0.40 -8.45 16 9 C 0.08 0.72 9.31 59.85 0.56 1.27 16 10 C 0.70 12.40 8.00 -86.92 -0.70 11.71 16 11 O -0.58 -12.70 13.40 5.29 0.07 -12.63 16 12 N -0.67 -11.98 5.19 -14.10 -0.07 -12.05 16 13 C 0.01 0.27 6.27 -83.57 -0.52 -0.25 16 14 C -0.12 -2.67 9.89 -39.79 -0.39 -3.07 16 15 C -0.15 -3.92 8.63 -39.26 -0.34 -4.25 16 16 C 0.10 2.82 5.57 -106.80 -0.59 2.22 16 17 C -0.46 -12.27 9.04 -37.85 -0.34 -12.62 16 18 H 0.08 1.98 7.90 -52.49 -0.41 1.57 16 19 C 0.07 1.88 5.15 -17.34 -0.09 1.79 16 20 N -0.80 -20.60 10.95 55.55 0.61 -20.00 16 21 Si 0.91 18.69 29.59 -169.99 -5.03 13.66 16 22 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 23 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 24 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 25 C -0.21 -5.50 9.74 -39.26 -0.38 -5.88 16 26 C -0.08 -1.85 8.57 -39.79 -0.34 -2.19 16 27 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 28 H 0.08 0.73 8.14 -51.92 -0.42 0.30 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 31 H 0.08 1.09 7.75 -51.92 -0.40 0.68 16 32 H 0.07 0.65 6.48 -51.93 -0.34 0.32 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.44 7.67 -51.93 -0.40 0.04 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.53 6.34 -51.93 -0.33 0.20 16 39 H 0.06 0.57 6.29 -51.93 -0.33 0.24 16 40 H 0.39 5.64 6.51 -40.82 -0.27 5.37 16 41 H 0.09 1.78 8.06 -52.48 -0.42 1.35 16 42 H 0.12 3.18 6.18 -52.49 -0.32 2.86 16 43 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 44 H 0.09 2.30 8.06 -52.48 -0.42 1.88 16 45 H 0.10 2.44 6.47 -52.49 -0.34 2.10 16 LS Contribution 376.29 15.07 5.67 5.67 Total: -1.00 -30.67 376.29 -10.22 -40.89 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -6.86 Total: 11.03 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -1.80 Total: -12.62 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.14 Total: -40.50 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.07 Total: -12.63 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Atomic # 16 Polarization: -3.09 SS G_CDS: -2.41 Total: -5.50 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.67 -10.22 -40.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077186017.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.108 kcal (2) G-P(sol) polarization free energy of solvation -30.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds