Wall clock time and date at job start Tue Mar 31 2020 13:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81398 * 102.99978 * 2 1 4 4 C 1.52997 * 109.47194 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47470 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.46878 * 55.00490 * 5 4 3 7 7 C 1.53000 * 109.46987 * 175.00111 * 5 4 3 8 8 N 1.46500 * 109.47249 * 295.00213 * 5 4 3 9 9 C 1.46501 * 119.99950 * 299.99837 * 8 5 4 10 10 C 1.34775 * 119.99780 * 119.99820 * 8 5 4 11 11 O 1.21582 * 120.00365 * 359.97438 * 10 8 5 12 12 N 1.34775 * 119.99662 * 180.02562 * 10 8 5 13 13 C 1.39243 * 119.99958 * 185.13262 * 12 10 8 14 14 C 1.39481 * 119.83726 * 214.20548 * 13 12 10 15 15 C 1.36367 * 120.17184 * 179.71439 * 14 13 12 16 16 C 1.40872 * 119.82725 * 0.58198 * 15 14 13 17 17 C 1.41160 * 120.16527 * 179.67192 * 16 15 14 18 18 H 1.07997 * 119.99725 * 205.37020 * 17 16 15 19 19 C 1.39895 * 119.99723 * 25.37469 * 17 16 15 20 20 N 1.30881 * 120.00248 * 16.81121 * 19 17 16 21 21 Si 1.86803 * 119.99856 * 196.81744 * 19 17 16 22 22 H 1.48499 * 109.46986 * 59.99614 * 21 19 17 23 23 H 1.48499 * 109.47010 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.46977 * 299.99770 * 21 19 17 25 25 C 1.40864 * 119.67119 * 359.69344 * 16 15 14 26 26 C 1.36376 * 119.82846 * 0.02562 * 25 16 15 27 27 H 1.09000 * 109.47183 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46828 * 299.99758 * 1 2 3 29 29 H 1.08998 * 109.47196 * 59.99585 * 1 2 3 30 30 H 1.09003 * 109.47201 * 60.00246 * 3 2 1 31 31 H 1.09002 * 109.47439 * 300.00134 * 3 2 1 32 32 H 1.09003 * 109.46922 * 59.99981 * 4 3 2 33 33 H 1.08997 * 109.47648 * 300.00476 * 4 3 2 34 34 H 1.09000 * 109.46914 * 180.02562 * 7 5 4 35 35 H 1.09000 * 109.47389 * 299.99615 * 7 5 4 36 36 H 1.08997 * 109.47479 * 60.00686 * 7 5 4 37 37 H 1.08992 * 109.46916 * 270.00190 * 9 8 5 38 38 H 1.09000 * 109.47123 * 29.99920 * 9 8 5 39 39 H 1.09002 * 109.46872 * 149.99745 * 9 8 5 40 40 H 0.97003 * 120.00262 * 5.13302 * 12 10 8 41 41 H 1.08006 * 119.91248 * 359.97438 * 14 13 12 42 42 H 1.08000 * 120.09110 * 180.25590 * 15 14 13 43 43 H 0.97000 * 119.99688 * 180.02562 * 20 19 17 44 44 H 1.08006 * 120.08635 * 179.97438 * 25 16 15 45 45 H 1.08000 * 119.91261 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 6 4.0866 3.4307 0.0000 6 1 3.5944 3.9168 0.8424 7 6 5.6015 3.6042 0.1251 8 7 3.6270 4.0386 -1.2512 9 6 4.1456 3.5562 -2.5337 10 6 2.7272 5.0416 -1.2224 11 8 2.2965 5.4416 -0.1582 12 7 2.3041 5.6004 -2.3736 13 6 1.4576 6.7055 -2.3410 14 6 0.4842 6.8633 -3.3275 15 6 -0.3523 7.9400 -3.2989 16 6 -0.2233 8.9006 -2.2766 17 6 -1.0808 10.0214 -2.2442 18 1 -0.7611 10.9319 -1.7594 19 6 -2.3447 9.9525 -2.8398 20 7 -2.8684 8.7890 -3.1312 21 14 -3.2850 11.5214 -3.2196 22 1 -2.4925 12.3592 -4.1551 23 1 -4.5876 11.1787 -3.8449 24 1 -3.5220 12.2733 -1.9611 25 6 0.7660 8.7373 -1.2872 26 6 1.5914 7.6524 -1.3257 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8032 2.2371 0.8900 31 1 1.8032 2.2372 -0.8900 32 1 4.1608 1.4704 -0.8909 33 1 4.1617 1.4702 0.8890 34 1 5.8467 4.6663 0.1260 35 1 5.9435 3.1521 1.0560 36 1 6.0937 3.1182 -0.7173 37 1 5.0389 4.1211 -2.7999 38 1 4.3961 2.4987 -2.4497 39 1 3.3876 3.6899 -3.3055 40 1 2.5892 5.2328 -3.2247 41 1 0.3899 6.1287 -4.1136 42 1 -1.1082 8.0587 -4.0610 43 1 -3.7446 8.7413 -3.5446 44 1 0.8710 9.4699 -0.5006 45 1 2.3506 7.5261 -0.5680 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077186017.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:18 Heat of formation + Delta-G solvation = -24.412127 kcal Electronic energy + Delta-G solvation = -24814.483208 eV Core-core repulsion = 21343.375807 eV Total energy + Delta-G solvation = -3471.107401 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.65002 -39.52363 -37.85041 -36.17783 -35.03640 -33.74981 -31.49686 -31.20321 -30.44187 -29.81717 -27.87192 -26.75893 -24.97918 -23.63687 -22.86422 -21.84730 -20.32409 -19.48221 -19.19009 -17.99899 -17.26735 -17.12571 -17.00158 -16.56704 -15.82109 -15.60583 -15.33774 -15.16380 -14.84936 -14.65460 -14.50328 -14.25535 -14.07595 -13.95486 -13.72326 -13.68793 -13.46468 -13.42516 -13.11362 -12.86918 -12.85405 -12.74106 -12.45043 -12.33459 -12.03075 -11.82637 -11.72787 -11.44404 -11.18527 -11.06124 -10.97169 -10.68436 -9.66647 -9.46425 -8.80595 -8.74602 -8.58184 -6.26175 0.67440 0.86241 1.14385 1.39236 1.48568 1.52266 1.56145 1.71018 2.19528 2.23233 2.76779 3.07820 3.69286 3.73677 3.86961 3.99175 4.21529 4.22337 4.26683 4.33379 4.38346 4.40940 4.50098 4.54220 4.66097 4.78171 4.80274 4.83248 4.89338 4.90976 5.01659 5.07355 5.14818 5.16333 5.28091 5.33494 5.45377 5.59866 5.67401 5.82084 6.04474 6.10823 6.17351 6.38655 6.66106 6.93943 7.00996 7.04611 7.66114 8.34463 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016554 B = 0.002791 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.038333 B =10029.289621 C =11058.651777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.284 6.284 3 C -0.072 4.072 4 C -0.100 4.100 5 C 0.154 3.846 6 H 0.072 0.928 7 C -0.150 4.150 8 N -0.620 5.620 9 C 0.069 3.931 10 C 0.692 3.308 11 O -0.625 6.625 12 N -0.660 5.660 13 C 0.030 3.970 14 C -0.114 4.114 15 C -0.168 4.168 16 C 0.074 3.926 17 C -0.498 4.498 18 H 0.074 0.926 19 C 0.035 3.965 20 N -0.826 5.826 21 Si 0.984 3.016 22 H -0.259 1.259 23 H -0.266 1.266 24 H -0.263 1.263 25 C -0.232 4.232 26 C -0.086 4.086 27 H 0.118 0.882 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.045 0.955 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.410 0.590 41 H 0.121 0.879 42 H 0.111 0.889 43 H 0.289 0.711 44 H 0.092 0.908 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.160 -16.254 -0.311 20.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.058 6.058 3 C -0.220 4.220 4 C -0.139 4.139 5 C 0.048 3.952 6 H 0.091 0.909 7 C -0.209 4.209 8 N -0.358 5.358 9 C -0.073 4.073 10 C 0.395 3.605 11 O -0.506 6.506 12 N -0.309 5.309 13 C -0.065 4.065 14 C -0.135 4.135 15 C -0.188 4.188 16 C 0.071 3.929 17 C -0.527 4.527 18 H 0.092 0.908 19 C -0.180 4.180 20 N -0.452 5.452 21 Si 0.804 3.196 22 H -0.183 1.183 23 H -0.190 1.190 24 H -0.187 1.187 25 C -0.252 4.252 26 C -0.107 4.107 27 H 0.136 0.864 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.065 0.935 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.117 0.883 39 H 0.089 0.911 40 H 0.249 0.751 41 H 0.139 0.861 42 H 0.129 0.871 43 H 0.099 0.901 44 H 0.111 0.889 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.344 -17.022 0.352 21.029 hybrid contribution -1.570 1.710 -0.307 2.341 sum 10.774 -15.312 0.045 18.723 Atomic orbital electron populations 1.23432 0.92581 1.07471 1.05148 1.86577 1.09425 1.11704 1.98116 1.23290 1.01584 0.93241 1.03885 1.21698 0.91625 0.95404 1.05192 1.21026 0.96190 0.92200 0.85746 0.90938 1.22059 0.92722 1.02041 1.04032 1.47127 1.43919 1.35867 1.08851 1.21978 0.99887 1.02021 0.83400 1.16146 0.80164 0.80318 0.83908 1.90880 1.62224 1.66699 1.30769 1.42085 1.50037 1.30944 1.07829 1.16998 0.97739 0.90159 1.01568 1.20431 0.94695 0.98935 0.99410 1.20884 1.00898 0.97072 0.99985 1.17953 0.91513 0.93291 0.90102 1.19750 1.00018 0.99357 1.33616 0.90810 1.26747 0.98118 1.00767 0.92321 1.69884 1.16627 1.27355 1.31311 0.85231 0.77242 0.77562 0.79519 1.18291 1.19034 1.18718 1.20770 1.03100 1.00407 1.00929 1.20316 0.99154 0.93323 0.97873 0.86352 0.90464 0.90657 0.91740 0.91792 0.88867 0.88394 0.93545 0.89634 0.90192 0.91110 0.88287 0.91118 0.75116 0.86064 0.87121 0.90071 0.88940 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.09 10.76 113.37 1.22 -0.88 16 2 S -0.28 -5.83 22.38 -56.49 -1.26 -7.09 16 3 C -0.07 -1.59 5.83 71.98 0.42 -1.17 16 4 C -0.10 -1.68 4.64 30.59 0.14 -1.54 16 5 C 0.15 3.21 2.64 44.99 0.12 3.33 16 6 H 0.07 2.03 6.90 -2.39 -0.02 2.02 16 7 C -0.15 -2.26 9.19 71.98 0.66 -1.60 16 8 N -0.62 -14.77 2.21 -840.63 -1.86 -16.63 16 9 C 0.07 1.02 9.31 127.77 1.19 2.21 16 10 C 0.69 24.39 8.00 179.06 1.43 25.82 16 11 O -0.63 -28.25 13.40 -3.97 -0.05 -28.30 16 12 N -0.66 -23.01 5.19 -316.79 -1.64 -24.65 16 13 C 0.03 1.33 6.27 38.56 0.24 1.57 16 14 C -0.11 -5.23 9.89 22.13 0.22 -5.01 16 15 C -0.17 -8.89 8.63 22.48 0.19 -8.69 16 16 C 0.07 4.15 5.57 -21.27 -0.12 4.03 16 17 C -0.50 -27.62 9.04 23.39 0.21 -27.41 16 18 H 0.07 3.96 7.90 -2.91 -0.02 3.94 16 19 C 0.04 1.79 5.15 85.24 0.44 2.23 16 20 N -0.83 -43.54 10.95 21.82 0.24 -43.31 16 21 Si 0.98 38.60 29.59 68.60 2.03 40.63 16 22 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 23 H -0.27 -9.78 7.11 99.48 0.71 -9.08 16 24 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 25 C -0.23 -12.46 9.74 22.48 0.22 -12.24 16 26 C -0.09 -4.32 8.57 22.13 0.19 -4.13 16 27 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.06 1.64 7.75 -2.39 -0.02 1.62 16 32 H 0.09 1.26 6.48 -2.39 -0.02 1.25 16 33 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.08 0.87 7.67 -2.39 -0.02 0.85 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.10 1.00 6.34 -2.39 -0.02 0.98 16 39 H 0.07 0.99 6.29 -2.39 -0.02 0.98 16 40 H 0.41 10.89 6.51 -92.71 -0.60 10.29 16 41 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 42 H 0.11 5.99 6.18 -2.91 -0.02 5.98 16 43 H 0.29 13.72 8.30 -92.71 -0.77 12.95 16 44 H 0.09 4.80 8.06 -2.91 -0.02 4.78 16 45 H 0.10 4.92 6.47 -2.91 -0.02 4.90 16 Total: -1.00 -69.83 376.29 4.61 -65.22 By element: Atomic # 1 Polarization: 37.22 SS G_CDS: 0.39 Total: 37.61 kcal Atomic # 6 Polarization: -30.25 SS G_CDS: 6.78 Total: -23.48 kcal Atomic # 7 Polarization: -81.32 SS G_CDS: -3.27 Total: -84.59 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -0.05 Total: -28.30 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.63 kcal Atomic # 16 Polarization: -5.83 SS G_CDS: -1.26 Total: -7.09 kcal Total: -69.83 4.61 -65.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077186017.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.803 kcal (2) G-P(sol) polarization free energy of solvation -69.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds