Wall clock time and date at job start Tue Mar 31 2020 13:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50704 * 119.99842 * 2 1 4 4 N 1.46501 * 109.47345 * 124.99808 * 3 2 1 5 5 C 1.46500 * 120.00337 * 273.96309 * 4 3 2 6 6 C 1.50708 * 109.46663 * 269.99721 * 5 4 3 7 7 C 1.33392 * 125.20235 * 89.99883 * 6 5 4 8 8 C 1.38422 * 114.91962 * 179.97438 * 7 6 5 9 9 C 1.33388 * 114.92146 * 359.97438 * 8 7 6 10 10 S 1.75878 * 125.20182 * 269.69042 * 6 5 4 11 11 C 1.34784 * 119.99611 * 93.95395 * 4 3 2 12 12 O 1.21281 * 119.99514 * 184.76290 * 11 4 3 13 13 C 1.50691 * 120.00132 * 4.77032 * 11 4 3 14 14 H 1.09001 * 109.47525 * 324.47794 * 13 11 4 15 15 C 1.53007 * 109.47428 * 84.47431 * 13 11 4 16 16 N 1.46896 * 109.47316 * 204.47570 * 13 11 4 17 17 C 1.46904 * 111.00105 * 60.36278 * 16 13 11 18 18 C 1.46895 * 111.00600 * 184.31994 * 16 13 11 19 19 C 1.50698 * 109.47521 * 169.99829 * 18 16 13 20 20 H 1.07997 * 119.99868 * 359.72994 * 19 18 16 21 21 C 1.37879 * 120.00033 * 179.97438 * 19 18 16 22 22 N 1.31514 * 120.00334 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99892 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46876 * 60.00440 * 23 21 19 25 25 H 1.48498 * 109.47140 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47329 * 300.00591 * 23 21 19 27 27 H 1.08002 * 120.00067 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00502 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.00502 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.46869 * 5.00303 * 3 2 1 31 31 H 1.09000 * 109.47500 * 245.00177 * 3 2 1 32 32 H 1.08995 * 109.46805 * 29.99274 * 5 4 3 33 33 H 1.08997 * 109.47380 * 149.99877 * 5 4 3 34 34 H 1.08001 * 122.53863 * 359.95279 * 7 6 5 35 35 H 1.07998 * 122.53850 * 180.02562 * 8 7 6 36 36 H 1.08000 * 125.20370 * 180.02562 * 9 8 7 37 37 H 1.08993 * 109.47453 * 187.60138 * 15 13 11 38 38 H 1.08997 * 109.47000 * 307.60431 * 15 13 11 39 39 H 1.09006 * 109.46486 * 67.60315 * 15 13 11 40 40 H 1.08994 * 109.47260 * 188.56835 * 17 16 13 41 41 H 1.09001 * 109.46949 * 308.57159 * 17 16 13 42 42 H 1.09006 * 109.46526 * 68.56614 * 17 16 13 43 43 H 1.09000 * 109.46828 * 49.99971 * 18 16 13 44 44 H 1.08999 * 109.47247 * 290.00562 * 18 16 13 45 45 H 0.96993 * 120.00190 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3320 1.1314 5 6 2.5341 1.7839 2.4471 6 6 2.7404 3.2719 2.5674 7 6 1.8491 4.2022 2.2218 8 6 2.2612 5.5082 2.4233 9 6 3.4870 5.6385 2.9329 10 16 4.1903 4.0473 3.1919 11 6 4.2723 0.9409 0.9620 12 8 5.0194 0.8806 1.9155 13 6 4.7736 0.5786 -0.4122 14 1 3.9773 0.0878 -0.9718 15 6 5.2064 1.8481 -1.1484 16 7 5.9198 -0.3320 -0.2909 17 6 5.5387 -1.5685 0.4047 18 6 6.5000 -0.6265 -1.6079 19 6 7.8071 -1.3550 -1.4296 20 1 8.1726 -1.5733 -0.4371 21 6 8.5388 -1.7385 -2.5336 22 7 8.0963 -1.4681 -3.7422 23 14 10.1593 -2.6410 -2.3125 24 1 9.9226 -3.9110 -1.5801 25 1 10.7457 -2.9388 -3.6439 26 1 11.0980 -1.7904 -1.5376 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5401 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3584 2.1317 0.0896 31 1 2.6212 1.4027 -0.9314 32 1 1.4748 1.5536 2.5607 33 1 3.1023 1.2742 3.2252 34 1 0.8794 3.9552 1.8154 35 1 1.6373 6.3573 2.1866 36 1 3.9720 6.5773 3.1561 37 1 5.4410 1.6052 -2.1847 38 1 4.3974 2.5780 -1.1204 39 1 6.0894 2.2656 -0.6643 40 1 6.4317 -2.1566 0.6160 41 1 5.0379 -1.3194 1.3403 42 1 4.8635 -2.1468 -0.2260 43 1 6.6742 0.3060 -2.1449 44 1 5.8110 -1.2503 -2.1773 45 1 8.6109 -1.7382 -4.5187 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083218018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:56 Heat of formation + Delta-G solvation = 39.514268 kcal Electronic energy + Delta-G solvation = -25515.632007 eV Core-core repulsion = 22047.296662 eV Total energy + Delta-G solvation = -3468.335344 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.15008 -37.97869 -36.57372 -35.99239 -33.41094 -32.65718 -31.28326 -30.03587 -27.46637 -26.94621 -25.74201 -24.42863 -23.83709 -22.77415 -20.81136 -20.07605 -19.39485 -18.54370 -17.36751 -17.04683 -16.49868 -15.97225 -15.64251 -15.22317 -14.80265 -14.59759 -14.40356 -13.77966 -13.69210 -13.30433 -13.19251 -12.89156 -12.82937 -12.74926 -12.47505 -12.22671 -12.04360 -11.78120 -11.68026 -11.53283 -11.46378 -11.10621 -10.91281 -10.84592 -10.69303 -10.60971 -10.42975 -9.91774 -9.69712 -9.34461 -9.18288 -8.80883 -8.69197 -8.50989 -8.38469 -7.20116 -6.00495 -4.00583 0.85756 1.59878 1.97051 2.00475 2.56660 2.92914 3.23656 3.36926 3.40059 3.44564 4.44614 4.56870 4.68798 4.80389 4.85969 4.91858 4.94311 5.15122 5.19287 5.32190 5.35454 5.40772 5.46377 5.55514 5.58797 5.62541 5.72939 5.96467 5.97688 6.15267 6.18224 6.21583 6.33542 6.35706 6.36887 6.41575 6.62568 6.64796 6.81379 7.24805 7.31305 7.41970 7.82752 8.07125 8.19684 8.45730 8.58086 9.06879 9.63144 11.10497 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015547 B = 0.003424 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.615430 B = 8175.845054 C = 9139.261664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.170 4.170 3 C 0.133 3.867 4 N -0.613 5.613 5 C 0.186 3.814 6 C -0.194 4.194 7 C -0.133 4.133 8 C -0.140 4.140 9 C -0.225 4.225 10 S 0.141 5.859 11 C 0.524 3.476 12 O -0.507 6.507 13 C 0.068 3.932 14 H 0.048 0.952 15 C -0.139 4.139 16 N -0.517 5.517 17 C 0.040 3.960 18 C 0.191 3.809 19 C -0.505 4.505 20 H 0.063 0.937 21 C 0.056 3.944 22 N -0.901 5.901 23 Si 0.898 3.102 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.276 1.276 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.112 0.888 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.161 0.839 37 H 0.076 0.924 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.048 0.952 42 H 0.009 0.991 43 H 0.039 0.961 44 H -0.010 1.010 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.071 11.191 9.944 23.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.189 4.189 3 C 0.010 3.990 4 N -0.348 5.348 5 C 0.062 3.938 6 C -0.313 4.313 7 C -0.165 4.165 8 C -0.171 4.171 9 C -0.361 4.361 10 S 0.405 5.595 11 C 0.312 3.688 12 O -0.380 6.380 13 C -0.045 4.045 14 H 0.066 0.934 15 C -0.196 4.196 16 N -0.243 5.243 17 C -0.109 4.109 18 C 0.067 3.933 19 C -0.543 4.543 20 H 0.082 0.918 21 C -0.145 4.145 22 N -0.540 5.540 23 Si 0.726 3.274 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.201 1.201 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.130 0.870 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.178 0.822 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.027 0.973 43 H 0.057 0.943 44 H 0.008 0.992 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.803 10.847 11.129 22.163 hybrid contribution -1.211 -0.319 -1.189 1.727 sum -17.014 10.527 9.940 22.340 Atomic orbital electron populations 1.23838 0.95634 1.01952 1.00449 1.23427 0.96332 0.99239 0.99889 1.20761 0.92629 0.95278 0.90315 1.48104 1.10443 1.66597 1.09678 1.19712 1.00749 0.86897 0.86452 1.25020 0.98089 1.00258 1.07967 1.20064 1.00783 0.91879 1.03787 1.20102 0.96335 0.97570 1.03095 1.25783 0.99807 1.01725 1.08785 1.84867 1.17223 0.96437 1.60973 1.20997 0.80424 0.75603 0.91807 1.90667 1.54749 1.50574 1.41999 1.21564 0.94546 0.96936 0.91423 0.93444 1.21797 1.01629 0.94788 1.01411 1.61990 1.24961 1.13253 1.24065 1.22225 1.00289 0.91685 0.96696 1.19864 0.94117 0.96489 0.82874 1.21124 1.04534 1.35735 0.92939 0.91838 1.24959 0.98142 0.96333 0.95102 1.69938 1.39008 1.47506 0.97593 0.86555 0.83677 0.80146 0.77017 1.20302 1.21403 1.20127 0.88293 0.88497 0.87036 0.90109 0.88647 0.88964 0.88783 0.84699 0.84678 0.82188 0.90516 0.93104 0.90941 0.90717 0.93318 0.97287 0.94320 0.99207 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.43 14.32 29.02 0.42 -1.02 16 2 C -0.17 -1.68 9.77 -36.02 -0.35 -2.03 16 3 C 0.13 1.36 5.50 -5.19 -0.03 1.34 16 4 N -0.61 -7.88 2.44 -176.43 -0.43 -8.31 16 5 C 0.19 2.12 5.95 -5.19 -0.03 2.09 16 6 C -0.19 -2.22 6.09 -36.00 -0.22 -2.44 16 7 C -0.13 -1.30 10.05 -41.21 -0.41 -1.71 16 8 C -0.14 -1.32 10.18 -41.21 -0.42 -1.74 16 9 C -0.22 -2.28 11.23 29.04 0.33 -1.95 16 10 S 0.14 1.75 23.33 -107.50 -2.51 -0.76 16 11 C 0.52 8.89 5.81 -10.99 -0.06 8.83 16 12 O -0.51 -10.28 14.99 5.56 0.08 -10.19 16 13 C 0.07 1.24 1.62 -68.87 -0.11 1.12 16 14 H 0.05 0.82 6.59 -51.93 -0.34 0.47 16 15 C -0.14 -2.37 8.28 37.16 0.31 -2.06 16 16 N -0.52 -11.68 4.33 -237.74 -1.03 -12.71 16 17 C 0.04 0.84 9.02 60.07 0.54 1.38 16 18 C 0.19 4.97 4.47 -4.98 -0.02 4.95 16 19 C -0.50 -14.40 8.57 -34.44 -0.30 -14.70 16 20 H 0.06 1.83 7.11 -52.49 -0.37 1.45 16 21 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 22 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 23 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 H 0.10 0.72 8.06 -52.49 -0.42 0.30 16 28 H 0.10 0.62 7.84 -52.49 -0.41 0.21 16 29 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.08 0.66 7.75 -51.93 -0.40 0.25 16 31 H 0.10 1.04 5.28 -51.93 -0.27 0.76 16 32 H 0.09 0.81 8.07 -51.93 -0.42 0.39 16 33 H 0.09 1.22 7.36 -51.93 -0.38 0.84 16 34 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 35 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.16 1.28 8.06 -52.49 -0.42 0.85 16 37 H 0.08 1.37 6.58 -51.93 -0.34 1.03 16 38 H 0.05 0.71 7.44 -51.93 -0.39 0.32 16 39 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.07 1.67 7.00 -51.93 -0.36 1.31 16 41 H 0.05 0.97 6.13 -51.93 -0.32 0.65 16 42 H 0.01 0.18 8.09 -51.93 -0.42 -0.24 16 43 H 0.04 1.04 5.86 -51.93 -0.30 0.74 16 44 H -0.01 -0.27 8.08 -51.93 -0.42 -0.69 16 45 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 381.49 15.07 5.75 5.75 Total: -1.00 -32.45 381.49 -9.71 -42.16 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -6.83 Total: -0.54 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -0.46 Total: -6.46 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: -0.72 Total: -46.91 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.08 Total: -10.19 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.51 Total: -0.76 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.45 -9.71 -42.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083218018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.676 kcal (2) G-P(sol) polarization free energy of solvation -32.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds