Wall clock time and date at job start Tue Mar 31 2020 13:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50704 * 119.99842 * 2 1 4 4 N 1.46501 * 109.47345 * 124.99808 * 3 2 1 5 5 C 1.46500 * 120.00337 * 273.96309 * 4 3 2 6 6 C 1.50708 * 109.46663 * 269.99721 * 5 4 3 7 7 C 1.33392 * 125.20235 * 89.99883 * 6 5 4 8 8 C 1.38422 * 114.91962 * 179.97438 * 7 6 5 9 9 C 1.33388 * 114.92146 * 359.97438 * 8 7 6 10 10 S 1.75878 * 125.20182 * 269.69042 * 6 5 4 11 11 C 1.34784 * 119.99611 * 93.95395 * 4 3 2 12 12 O 1.21281 * 119.99514 * 184.76290 * 11 4 3 13 13 C 1.50691 * 120.00132 * 4.77032 * 11 4 3 14 14 H 1.09001 * 109.47525 * 324.47794 * 13 11 4 15 15 C 1.53007 * 109.47428 * 84.47431 * 13 11 4 16 16 N 1.46896 * 109.47316 * 204.47570 * 13 11 4 17 17 C 1.46904 * 111.00105 * 60.36278 * 16 13 11 18 18 C 1.46895 * 111.00600 * 184.31994 * 16 13 11 19 19 C 1.50698 * 109.47521 * 169.99829 * 18 16 13 20 20 H 1.07997 * 119.99868 * 359.72994 * 19 18 16 21 21 C 1.37879 * 120.00033 * 179.97438 * 19 18 16 22 22 N 1.31514 * 120.00334 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99892 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46876 * 60.00440 * 23 21 19 25 25 H 1.48498 * 109.47140 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47329 * 300.00591 * 23 21 19 27 27 H 1.08002 * 120.00067 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00502 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.00502 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.46869 * 5.00303 * 3 2 1 31 31 H 1.09000 * 109.47500 * 245.00177 * 3 2 1 32 32 H 1.08995 * 109.46805 * 29.99274 * 5 4 3 33 33 H 1.08997 * 109.47380 * 149.99877 * 5 4 3 34 34 H 1.08001 * 122.53863 * 359.95279 * 7 6 5 35 35 H 1.07998 * 122.53850 * 180.02562 * 8 7 6 36 36 H 1.08000 * 125.20370 * 180.02562 * 9 8 7 37 37 H 1.08993 * 109.47453 * 187.60138 * 15 13 11 38 38 H 1.08997 * 109.47000 * 307.60431 * 15 13 11 39 39 H 1.09006 * 109.46486 * 67.60315 * 15 13 11 40 40 H 1.08994 * 109.47260 * 188.56835 * 17 16 13 41 41 H 1.09001 * 109.46949 * 308.57159 * 17 16 13 42 42 H 1.09006 * 109.46526 * 68.56614 * 17 16 13 43 43 H 1.09000 * 109.46828 * 49.99971 * 18 16 13 44 44 H 1.08999 * 109.47247 * 290.00562 * 18 16 13 45 45 H 0.96993 * 120.00190 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3320 1.1314 5 6 2.5341 1.7839 2.4471 6 6 2.7404 3.2719 2.5674 7 6 1.8491 4.2022 2.2218 8 6 2.2612 5.5082 2.4233 9 6 3.4870 5.6385 2.9329 10 16 4.1903 4.0473 3.1919 11 6 4.2723 0.9409 0.9620 12 8 5.0194 0.8806 1.9155 13 6 4.7736 0.5786 -0.4122 14 1 3.9773 0.0878 -0.9718 15 6 5.2064 1.8481 -1.1484 16 7 5.9198 -0.3320 -0.2909 17 6 5.5387 -1.5685 0.4047 18 6 6.5000 -0.6265 -1.6079 19 6 7.8071 -1.3550 -1.4296 20 1 8.1726 -1.5733 -0.4371 21 6 8.5388 -1.7385 -2.5336 22 7 8.0963 -1.4681 -3.7422 23 14 10.1593 -2.6410 -2.3125 24 1 9.9226 -3.9110 -1.5801 25 1 10.7457 -2.9388 -3.6439 26 1 11.0980 -1.7904 -1.5376 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5401 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3584 2.1317 0.0896 31 1 2.6212 1.4027 -0.9314 32 1 1.4748 1.5536 2.5607 33 1 3.1023 1.2742 3.2252 34 1 0.8794 3.9552 1.8154 35 1 1.6373 6.3573 2.1866 36 1 3.9720 6.5773 3.1561 37 1 5.4410 1.6052 -2.1847 38 1 4.3974 2.5780 -1.1204 39 1 6.0894 2.2656 -0.6643 40 1 6.4317 -2.1566 0.6160 41 1 5.0379 -1.3194 1.3403 42 1 4.8635 -2.1468 -0.2260 43 1 6.6742 0.3060 -2.1449 44 1 5.8110 -1.2503 -2.1773 45 1 8.6109 -1.7382 -4.5187 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083218018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:54 Heat of formation + Delta-G solvation = 20.056439 kcal Electronic energy + Delta-G solvation = -25516.475762 eV Core-core repulsion = 22047.296662 eV Total energy + Delta-G solvation = -3469.179099 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.41288 -38.90844 -38.00427 -37.18132 -34.77570 -34.21960 -32.66605 -31.15933 -29.45347 -27.80161 -26.82279 -26.26028 -25.12017 -23.94215 -22.26396 -21.05620 -20.22586 -19.75882 -18.63069 -18.32685 -18.04456 -17.20923 -16.72142 -16.56919 -16.28241 -15.91758 -15.79383 -15.30826 -14.97247 -14.49041 -14.24517 -14.11506 -13.95106 -13.77198 -13.58442 -13.51797 -13.34049 -13.26758 -13.00133 -12.81509 -12.80058 -12.53353 -12.45882 -12.35036 -12.31324 -12.18434 -11.88212 -11.51312 -11.33832 -10.71635 -10.54364 -10.38839 -9.85387 -9.58089 -9.40784 -9.00992 -8.20155 -6.28641 0.05919 0.77028 1.21716 1.24552 1.40233 1.43282 1.51139 1.60440 1.82210 2.21348 2.41596 3.12046 3.23755 3.51960 3.82678 4.03384 4.04781 4.10217 4.16545 4.20612 4.27451 4.37970 4.41574 4.54717 4.58140 4.67162 4.71800 4.75685 4.79732 4.84467 5.01179 5.06272 5.15409 5.17849 5.21701 5.28890 5.38444 5.40426 5.64337 5.65080 5.72723 5.85683 6.02255 6.25475 6.27504 6.59738 6.84954 7.20824 7.39960 8.90402 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015547 B = 0.003424 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.615430 B = 8175.845054 C = 9139.261664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.197 4.197 3 C 0.131 3.869 4 N -0.601 5.601 5 C 0.188 3.812 6 C -0.205 4.205 7 C -0.117 4.117 8 C -0.140 4.140 9 C -0.218 4.218 10 S 0.054 5.946 11 C 0.527 3.473 12 O -0.549 6.549 13 C 0.065 3.935 14 H 0.062 0.938 15 C -0.130 4.130 16 N -0.535 5.535 17 C 0.050 3.950 18 C 0.209 3.791 19 C -0.528 4.528 20 H 0.054 0.946 21 C 0.008 3.992 22 N -0.929 5.929 23 Si 0.964 3.036 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.273 1.273 27 H 0.105 0.895 28 H 0.123 0.877 29 H 0.087 0.913 30 H 0.115 0.885 31 H 0.086 0.914 32 H 0.128 0.872 33 H 0.070 0.930 34 H 0.168 0.832 35 H 0.166 0.834 36 H 0.178 0.822 37 H 0.064 0.936 38 H 0.086 0.914 39 H 0.048 0.952 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.014 0.986 43 H 0.025 0.975 44 H -0.033 1.033 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.815 12.398 9.879 26.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.216 4.216 3 C 0.009 3.991 4 N -0.334 5.334 5 C 0.065 3.935 6 C -0.323 4.323 7 C -0.149 4.149 8 C -0.170 4.170 9 C -0.354 4.354 10 S 0.318 5.682 11 C 0.315 3.685 12 O -0.426 6.426 13 C -0.047 4.047 14 H 0.079 0.921 15 C -0.187 4.187 16 N -0.260 5.260 17 C -0.099 4.099 18 C 0.083 3.917 19 C -0.566 4.566 20 H 0.072 0.928 21 C -0.190 4.190 22 N -0.569 5.569 23 Si 0.789 3.211 24 H -0.195 1.195 25 H -0.204 1.204 26 H -0.198 1.198 27 H 0.123 0.877 28 H 0.141 0.859 29 H 0.105 0.895 30 H 0.133 0.867 31 H 0.105 0.895 32 H 0.145 0.855 33 H 0.089 0.911 34 H 0.186 0.814 35 H 0.183 0.817 36 H 0.196 0.804 37 H 0.082 0.918 38 H 0.105 0.895 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.032 0.968 43 H 0.043 0.957 44 H -0.015 1.015 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.607 12.068 11.063 24.784 hybrid contribution -0.547 -0.613 -1.168 1.428 sum -19.154 11.455 9.895 24.413 Atomic orbital electron populations 1.24077 0.94750 1.03482 0.96721 1.23213 0.97053 0.98033 1.03333 1.20974 0.92518 0.96801 0.88773 1.48061 1.09199 1.64851 1.11251 1.19819 1.02071 0.86915 0.84718 1.24939 0.97517 1.00239 1.09631 1.20453 1.01321 0.91430 1.01712 1.20510 0.96109 0.98510 1.01898 1.26003 1.00059 1.00646 1.08655 1.85215 1.20135 0.99749 1.63099 1.20640 0.81717 0.75759 0.90410 1.90655 1.56358 1.52764 1.42776 1.21649 0.93470 0.96416 0.93190 0.92059 1.21710 1.01939 0.95043 1.00038 1.61840 1.27787 1.14242 1.22144 1.22091 0.99488 0.91174 0.97099 1.19496 0.93104 0.94898 0.84158 1.21411 1.05880 1.36571 0.92747 0.92779 1.25787 1.01620 0.96931 0.94698 1.70041 1.40411 1.48181 0.98291 0.85517 0.79219 0.79000 0.77368 1.19481 1.20356 1.19776 0.87701 0.85927 0.89467 0.86717 0.89540 0.85463 0.91124 0.81431 0.81663 0.80448 0.91753 0.89539 0.93234 0.92590 0.92190 0.96753 0.95731 1.01525 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 14.32 67.79 0.97 -0.86 16 2 C -0.20 -3.45 9.77 25.66 0.25 -3.20 16 3 C 0.13 2.33 5.50 85.63 0.47 2.80 16 4 N -0.60 -14.62 2.44 -830.48 -2.03 -16.65 16 5 C 0.19 3.98 5.95 85.64 0.51 4.49 16 6 C -0.20 -4.30 6.09 24.59 0.15 -4.15 16 7 C -0.12 -1.81 10.05 21.22 0.21 -1.60 16 8 C -0.14 -2.13 10.18 21.22 0.22 -1.91 16 9 C -0.22 -4.02 11.23 66.72 0.75 -3.27 16 10 S 0.05 1.37 23.33 -56.49 -1.32 0.05 16 11 C 0.53 18.08 5.81 87.65 0.51 18.59 16 12 O -0.55 -23.09 14.99 -3.03 -0.05 -23.13 16 13 C 0.06 2.41 1.62 44.17 0.07 2.48 16 14 H 0.06 2.13 6.59 -2.39 -0.02 2.11 16 15 C -0.13 -4.52 8.28 71.98 0.60 -3.92 16 16 N -0.53 -25.13 4.33 -906.06 -3.92 -29.05 16 17 C 0.05 2.19 9.02 127.69 1.15 3.34 16 18 C 0.21 11.33 4.47 85.56 0.38 11.71 16 19 C -0.53 -31.08 8.57 25.60 0.22 -30.86 16 20 H 0.05 3.22 7.11 -2.91 -0.02 3.20 16 21 C 0.01 0.47 5.46 84.66 0.46 0.93 16 22 N -0.93 -55.79 13.29 21.45 0.28 -55.51 16 23 Si 0.96 45.52 29.54 68.60 2.03 47.55 16 24 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 25 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 26 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 27 H 0.10 1.17 8.06 -2.91 -0.02 1.15 16 28 H 0.12 0.88 7.84 -2.91 -0.02 0.86 16 29 H 0.09 1.95 8.06 -2.91 -0.02 1.93 16 30 H 0.11 1.28 7.75 -2.38 -0.02 1.26 16 31 H 0.09 1.70 5.28 -2.39 -0.01 1.69 16 32 H 0.13 1.77 8.07 -2.39 -0.02 1.75 16 33 H 0.07 1.85 7.36 -2.39 -0.02 1.83 16 34 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 35 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 36 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 37 H 0.06 2.37 6.58 -2.39 -0.02 2.36 16 38 H 0.09 2.33 7.44 -2.39 -0.02 2.31 16 39 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 40 H 0.06 2.62 7.00 -2.39 -0.02 2.60 16 41 H 0.06 2.47 6.13 -2.39 -0.01 2.46 16 42 H 0.01 0.59 8.09 -2.38 -0.02 0.57 16 43 H 0.02 1.39 5.86 -2.39 -0.01 1.38 16 44 H -0.03 -1.89 8.08 -2.39 -0.02 -1.91 16 45 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -73.41 381.49 2.89 -70.52 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 0.97 Total: 11.65 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 6.92 Total: -5.43 kcal Atomic # 7 Polarization: -95.54 SS G_CDS: -5.66 Total: -101.21 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.05 Total: -23.13 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -1.32 Total: 0.05 kcal Total: -73.41 2.89 -70.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083218018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.574 kcal (2) G-P(sol) polarization free energy of solvation -73.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds