Wall clock time and date at job start Tue Mar 31 2020 14:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47086 * 2 1 4 4 C 1.46501 * 119.99794 * 269.99801 * 3 2 1 5 5 C 1.53001 * 109.47181 * 270.00240 * 4 3 2 6 6 C 1.34777 * 120.00559 * 89.99857 * 3 2 1 7 7 O 1.21595 * 119.99715 * 0.02562 * 6 3 2 8 8 N 1.34769 * 120.00288 * 180.27486 * 6 3 2 9 9 C 1.40191 * 119.99903 * 174.30409 * 8 6 3 10 10 C 1.38624 * 120.09974 * 33.54617 * 9 8 6 11 11 C 1.38269 * 120.00923 * 180.02562 * 10 9 8 12 12 C 1.38285 * 120.20777 * 0.02562 * 11 10 9 13 13 C 1.38205 * 120.19439 * 359.97438 * 12 11 10 14 14 C 1.38771 * 119.99165 * 359.68055 * 13 12 11 15 15 S 1.76201 * 120.10738 * 180.29432 * 14 13 12 16 16 C 1.81393 * 102.99716 * 359.80899 * 15 14 13 17 17 H 1.08998 * 109.48034 * 46.31042 * 16 15 14 18 18 C 1.53001 * 109.47307 * 286.30573 * 16 15 14 19 19 C 1.50703 * 109.47103 * 166.31101 * 16 15 14 20 20 H 1.07999 * 120.00097 * 359.97438 * 19 16 15 21 21 C 1.37881 * 120.00294 * 179.97438 * 19 16 15 22 22 N 1.31520 * 119.99765 * 0.02562 * 21 19 16 23 23 Si 1.86794 * 120.00199 * 179.97438 * 21 19 16 24 24 H 1.48500 * 109.47320 * 60.00184 * 23 21 19 25 25 H 1.48505 * 109.47290 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47455 * 299.99927 * 23 21 19 27 27 H 1.08995 * 109.47488 * 60.00151 * 1 2 3 28 28 H 1.09005 * 109.47159 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47070 * 300.00403 * 1 2 3 30 30 H 1.09003 * 109.47070 * 239.99597 * 2 1 3 31 31 H 1.09004 * 109.46892 * 119.99919 * 2 1 3 32 32 H 1.09004 * 109.47135 * 29.99977 * 4 3 2 33 33 H 1.08995 * 109.47317 * 150.00262 * 4 3 2 34 34 H 1.09003 * 109.47098 * 180.02562 * 5 4 3 35 35 H 1.09004 * 109.46872 * 299.99898 * 5 4 3 36 36 H 1.08995 * 109.47496 * 59.99732 * 5 4 3 37 37 H 0.97009 * 120.00219 * 354.30113 * 8 6 3 38 38 H 1.07997 * 119.99678 * 0.02562 * 10 9 8 39 39 H 1.08004 * 119.89465 * 179.97438 * 11 10 9 40 40 H 1.08004 * 119.89968 * 179.97438 * 12 11 10 41 41 H 1.08002 * 120.00489 * 179.97438 * 13 12 11 42 42 H 1.08999 * 109.46641 * 64.03744 * 18 16 15 43 43 H 1.08998 * 109.47573 * 184.04049 * 18 16 15 44 44 H 1.08998 * 109.47361 * 304.04315 * 18 16 15 45 45 H 0.96996 * 119.99963 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.7075 1.8313 -1.7104 6 6 2.2429 2.0166 1.1671 7 8 2.0407 1.4433 2.2202 8 7 2.6869 3.2891 1.1671 9 6 2.8067 3.9897 2.3754 10 6 3.1581 3.3185 3.5363 11 6 3.2753 4.0113 4.7272 12 6 3.0423 5.3738 4.7653 13 6 2.6915 6.0515 3.6130 14 6 2.5786 5.3656 2.4120 15 16 2.1391 6.2279 0.9396 16 6 1.9423 7.9380 1.5116 17 1 2.7852 8.2077 2.1479 18 6 0.6418 8.0629 2.3080 19 6 1.8941 8.8630 0.3229 20 1 1.9743 8.4622 -0.6768 21 6 1.7476 10.2209 0.5114 22 7 1.6504 10.7091 1.7288 23 14 1.6886 11.3675 -0.9621 24 1 0.5408 10.9999 -1.8297 25 1 1.5273 12.7675 -0.4938 26 1 2.9513 11.2468 -1.7342 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6876 -2.0284 33 1 2.0956 3.1409 -1.1385 34 1 3.8893 2.3455 -2.6542 35 1 4.3883 2.2154 -0.9508 36 1 3.8745 0.7621 -1.8407 37 1 2.9235 3.7203 0.3309 38 1 3.3404 2.2543 3.5106 39 1 3.5487 3.4864 5.6306 40 1 3.1349 5.9100 5.6983 41 1 2.5099 7.1156 3.6464 42 1 0.7053 7.4483 3.2059 43 1 0.4873 9.1043 2.5905 44 1 -0.1936 7.7250 1.6948 45 1 1.5477 11.6644 1.8614 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109028091.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:03 Heat of formation + Delta-G solvation = -4.181939 kcal Electronic energy + Delta-G solvation = -25176.132556 eV Core-core repulsion = 21705.902402 eV Total energy + Delta-G solvation = -3470.230154 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.68937 -38.50799 -36.27082 -34.81713 -34.13150 -32.11279 -31.07096 -30.04243 -29.89346 -28.52867 -25.39512 -23.89968 -23.71819 -22.58945 -21.99625 -21.15080 -19.60080 -18.42535 -17.48327 -16.87217 -16.12607 -15.83990 -15.48605 -15.17764 -14.80659 -14.35053 -14.22210 -14.08251 -13.71875 -13.51337 -13.35470 -13.19598 -12.77975 -12.66693 -12.48136 -12.23158 -11.95808 -11.90671 -11.72252 -11.40546 -11.23049 -11.12058 -11.08357 -11.02945 -10.64910 -10.50536 -10.23693 -10.05169 -9.74412 -9.46548 -9.08920 -8.97179 -8.85665 -8.52448 -7.91308 -6.54682 -6.24619 -4.34261 1.63423 1.79390 2.40152 2.62720 3.18597 3.21263 3.25753 3.28730 3.58690 3.86011 4.17718 4.26884 4.67506 4.84739 4.90537 5.07345 5.13324 5.19337 5.27561 5.36041 5.39697 5.43385 5.54895 5.62714 5.64196 5.76401 5.88955 5.90746 5.94507 6.08716 6.29186 6.34824 6.54319 6.56612 6.64685 6.72842 6.79408 6.83373 6.92829 6.94858 7.28588 7.38939 7.57765 7.74316 7.87261 7.99140 8.55219 8.64252 9.29999 10.81199 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013489 B = 0.003822 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.314247 B = 7325.080554 C = 8730.407123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.130 3.870 3 N -0.627 5.627 4 C 0.099 3.901 5 C -0.174 4.174 6 C 0.708 3.292 7 O -0.577 6.577 8 N -0.675 5.675 9 C 0.163 3.837 10 C -0.110 4.110 11 C -0.125 4.125 12 C -0.119 4.119 13 C -0.118 4.118 14 C -0.090 4.090 15 S -0.177 6.177 16 C 0.100 3.900 17 H 0.052 0.948 18 C -0.144 4.144 19 C -0.511 4.511 20 H 0.066 0.934 21 C 0.071 3.929 22 N -0.886 5.886 23 Si 0.906 3.094 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.408 0.592 38 H 0.140 0.860 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.139 0.861 42 H 0.021 0.979 43 H 0.096 0.904 44 H 0.038 0.962 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.087 -16.947 -2.865 17.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.007 3.993 3 N -0.364 5.364 4 C -0.024 4.024 5 C -0.232 4.232 6 C 0.411 3.589 7 O -0.454 6.454 8 N -0.323 5.323 9 C 0.062 3.938 10 C -0.132 4.132 11 C -0.147 4.147 12 C -0.139 4.139 13 C -0.142 4.142 14 C -0.206 4.206 15 S 0.071 5.929 16 C -0.027 4.027 17 H 0.070 0.930 18 C -0.203 4.203 19 C -0.551 4.551 20 H 0.084 0.916 21 C -0.133 4.133 22 N -0.523 5.523 23 Si 0.733 3.267 24 H -0.200 1.200 25 H -0.210 1.210 26 H -0.199 1.199 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.247 0.753 38 H 0.158 0.842 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.156 0.844 42 H 0.040 0.960 43 H 0.114 0.886 44 H 0.057 0.943 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.716 -17.560 -3.302 17.950 hybrid contribution 0.172 1.432 0.055 1.444 sum 1.888 -16.127 -3.248 16.559 Atomic orbital electron populations 1.22161 0.96047 1.01964 1.02595 1.21273 0.94185 0.80925 1.02894 1.47221 1.69838 1.14869 1.04442 1.21593 0.97126 0.97956 0.85752 1.22246 0.96513 1.02407 1.02041 1.15811 0.77957 0.81101 0.84078 1.90877 1.58830 1.66167 1.29573 1.42714 1.67948 1.12477 1.09165 1.16976 1.02003 0.88981 0.85817 1.21163 0.99873 1.00799 0.91323 1.20933 1.02173 0.94183 0.97369 1.21019 1.00642 0.94438 0.97849 1.21316 1.00852 1.00771 0.91285 1.21774 1.04640 0.94983 0.99183 1.84968 1.84712 1.11674 1.11584 1.21081 0.98105 0.84479 0.99019 0.93001 1.22136 0.97306 1.03763 0.97132 1.20599 1.52220 0.90607 0.91663 0.91581 1.24889 0.94344 0.97679 0.96414 1.69847 1.48564 1.13679 1.20218 0.86414 0.78904 0.79281 0.82079 1.19962 1.21002 1.19932 0.92651 0.91730 0.92002 0.90721 0.89798 0.89784 0.90206 0.91049 0.92304 0.92201 0.75309 0.84227 0.86290 0.86254 0.84371 0.96041 0.88551 0.94260 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 10.24 37.16 0.38 -1.21 16 2 C 0.13 1.26 6.13 -4.04 -0.02 1.23 16 3 N -0.63 -7.33 2.47 -179.42 -0.44 -7.77 16 4 C 0.10 0.92 5.85 -4.04 -0.02 0.90 16 5 C -0.17 -1.41 10.24 37.16 0.38 -1.03 16 6 C 0.71 10.97 8.14 -86.93 -0.71 10.26 16 7 O -0.58 -10.45 13.25 5.28 0.07 -10.38 16 8 N -0.67 -10.72 4.88 -14.06 -0.07 -10.79 16 9 C 0.16 2.95 6.34 -83.42 -0.53 2.42 16 10 C -0.11 -1.87 8.71 -39.43 -0.34 -2.22 16 11 C -0.12 -1.93 10.04 -39.55 -0.40 -2.33 16 12 C -0.12 -1.93 10.04 -39.58 -0.40 -2.32 16 13 C -0.12 -2.23 8.26 -39.40 -0.33 -2.55 16 14 C -0.09 -1.76 6.11 -38.91 -0.24 -2.00 16 15 S -0.18 -3.70 20.06 -107.50 -2.16 -5.85 16 16 C 0.10 2.43 1.97 -27.88 -0.05 2.37 16 17 H 0.05 1.34 6.87 -51.92 -0.36 0.98 16 18 C -0.14 -3.37 8.64 37.16 0.32 -3.05 16 19 C -0.51 -13.41 8.58 -34.44 -0.30 -13.70 16 20 H 0.07 1.73 7.71 -52.49 -0.40 1.32 16 21 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 22 N -0.89 -23.78 11.30 55.43 0.63 -23.15 16 23 Si 0.91 20.29 29.54 -169.99 -5.02 15.27 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.52 8.07 -51.93 -0.42 0.10 16 31 H 0.08 0.91 7.42 -51.93 -0.39 0.53 16 32 H 0.08 0.62 8.07 -51.93 -0.42 0.20 16 33 H 0.08 0.83 6.44 -51.93 -0.33 0.50 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.41 5.99 5.73 -40.82 -0.23 5.75 16 38 H 0.14 2.39 6.08 -52.49 -0.32 2.07 16 39 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 40 H 0.12 1.63 8.06 -52.48 -0.42 1.20 16 41 H 0.14 2.78 4.65 -52.49 -0.24 2.53 16 42 H 0.02 0.45 6.05 -51.93 -0.31 0.14 16 43 H 0.10 2.45 5.97 -51.93 -0.31 2.14 16 44 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 371.88 15.07 5.60 5.60 Total: -1.00 -29.21 371.88 -10.42 -39.63 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -6.68 Total: 8.91 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -2.35 Total: -11.47 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.11 Total: -41.72 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.07 Total: -10.38 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -2.16 Total: -5.85 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.21 -10.42 -39.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109028091.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.451 kcal (2) G-P(sol) polarization free energy of solvation -29.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds