Wall clock time and date at job start Tue Mar 31 2020 14:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47086 * 2 1 4 4 C 1.46501 * 119.99794 * 269.99801 * 3 2 1 5 5 C 1.53001 * 109.47181 * 270.00240 * 4 3 2 6 6 C 1.34777 * 120.00559 * 89.99857 * 3 2 1 7 7 O 1.21595 * 119.99715 * 0.02562 * 6 3 2 8 8 N 1.34769 * 120.00288 * 180.27486 * 6 3 2 9 9 C 1.40191 * 119.99903 * 174.30409 * 8 6 3 10 10 C 1.38624 * 120.09974 * 33.54617 * 9 8 6 11 11 C 1.38269 * 120.00923 * 180.02562 * 10 9 8 12 12 C 1.38285 * 120.20777 * 0.02562 * 11 10 9 13 13 C 1.38205 * 120.19439 * 359.97438 * 12 11 10 14 14 C 1.38771 * 119.99165 * 359.68055 * 13 12 11 15 15 S 1.76201 * 120.10738 * 180.29432 * 14 13 12 16 16 C 1.81393 * 102.99716 * 359.80899 * 15 14 13 17 17 H 1.08998 * 109.48034 * 46.31042 * 16 15 14 18 18 C 1.53001 * 109.47307 * 286.30573 * 16 15 14 19 19 C 1.50703 * 109.47103 * 166.31101 * 16 15 14 20 20 H 1.07999 * 120.00097 * 359.97438 * 19 16 15 21 21 C 1.37881 * 120.00294 * 179.97438 * 19 16 15 22 22 N 1.31520 * 119.99765 * 0.02562 * 21 19 16 23 23 Si 1.86794 * 120.00199 * 179.97438 * 21 19 16 24 24 H 1.48500 * 109.47320 * 60.00184 * 23 21 19 25 25 H 1.48505 * 109.47290 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47455 * 299.99927 * 23 21 19 27 27 H 1.08995 * 109.47488 * 60.00151 * 1 2 3 28 28 H 1.09005 * 109.47159 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47070 * 300.00403 * 1 2 3 30 30 H 1.09003 * 109.47070 * 239.99597 * 2 1 3 31 31 H 1.09004 * 109.46892 * 119.99919 * 2 1 3 32 32 H 1.09004 * 109.47135 * 29.99977 * 4 3 2 33 33 H 1.08995 * 109.47317 * 150.00262 * 4 3 2 34 34 H 1.09003 * 109.47098 * 180.02562 * 5 4 3 35 35 H 1.09004 * 109.46872 * 299.99898 * 5 4 3 36 36 H 1.08995 * 109.47496 * 59.99732 * 5 4 3 37 37 H 0.97009 * 120.00219 * 354.30113 * 8 6 3 38 38 H 1.07997 * 119.99678 * 0.02562 * 10 9 8 39 39 H 1.08004 * 119.89465 * 179.97438 * 11 10 9 40 40 H 1.08004 * 119.89968 * 179.97438 * 12 11 10 41 41 H 1.08002 * 120.00489 * 179.97438 * 13 12 11 42 42 H 1.08999 * 109.46641 * 64.03744 * 18 16 15 43 43 H 1.08998 * 109.47573 * 184.04049 * 18 16 15 44 44 H 1.08998 * 109.47361 * 304.04315 * 18 16 15 45 45 H 0.96996 * 119.99963 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.7075 1.8313 -1.7104 6 6 2.2429 2.0166 1.1671 7 8 2.0407 1.4433 2.2202 8 7 2.6869 3.2891 1.1671 9 6 2.8067 3.9897 2.3754 10 6 3.1581 3.3185 3.5363 11 6 3.2753 4.0113 4.7272 12 6 3.0423 5.3738 4.7653 13 6 2.6915 6.0515 3.6130 14 6 2.5786 5.3656 2.4120 15 16 2.1391 6.2279 0.9396 16 6 1.9423 7.9380 1.5116 17 1 2.7852 8.2077 2.1479 18 6 0.6418 8.0629 2.3080 19 6 1.8941 8.8630 0.3229 20 1 1.9743 8.4622 -0.6768 21 6 1.7476 10.2209 0.5114 22 7 1.6504 10.7091 1.7288 23 14 1.6886 11.3675 -0.9621 24 1 0.5408 10.9999 -1.8297 25 1 1.5273 12.7675 -0.4938 26 1 2.9513 11.2468 -1.7342 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6876 -2.0284 33 1 2.0956 3.1409 -1.1385 34 1 3.8893 2.3455 -2.6542 35 1 4.3883 2.2154 -0.9508 36 1 3.8745 0.7621 -1.8407 37 1 2.9235 3.7203 0.3309 38 1 3.3404 2.2543 3.5106 39 1 3.5487 3.4864 5.6306 40 1 3.1349 5.9100 5.6983 41 1 2.5099 7.1156 3.6464 42 1 0.7053 7.4483 3.2059 43 1 0.4873 9.1043 2.5905 44 1 -0.1936 7.7250 1.6948 45 1 1.5477 11.6644 1.8614 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109028091.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:02 Heat of formation + Delta-G solvation = -17.938837 kcal Electronic energy + Delta-G solvation = -25176.729100 eV Core-core repulsion = 21705.902402 eV Total energy + Delta-G solvation = -3470.826698 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.87173 -39.78031 -37.31445 -36.31067 -35.83257 -32.92936 -32.78901 -31.56183 -31.05297 -29.63307 -27.38994 -24.92621 -24.52816 -23.94506 -23.53939 -22.72157 -20.75765 -19.64783 -18.79658 -18.23817 -17.88360 -17.02190 -16.87988 -16.61832 -16.06541 -15.86484 -15.41367 -15.12939 -14.97490 -14.83482 -14.55174 -14.41289 -14.24724 -13.78559 -13.71010 -13.45783 -13.23289 -12.97893 -12.92923 -12.85856 -12.73011 -12.62375 -12.46967 -12.25903 -12.07202 -11.90341 -11.81945 -11.47779 -11.37284 -11.01643 -10.82127 -10.57353 -10.45151 -9.84537 -9.23915 -8.23274 -8.14104 -6.40388 0.26835 0.39928 0.83974 1.43524 1.44337 1.51192 1.53030 1.86405 1.99087 2.38900 2.76700 2.81871 3.06291 3.92076 3.94070 4.08601 4.18125 4.18874 4.38584 4.42191 4.46096 4.51393 4.53876 4.57299 4.59354 4.73971 4.81279 4.83676 4.87052 4.93124 4.96090 5.00393 5.18881 5.27485 5.30515 5.32870 5.32940 5.50437 5.55433 5.57461 5.61979 5.75282 5.82529 6.02395 6.06167 6.61891 6.72993 7.27183 7.36819 8.81925 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013489 B = 0.003822 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.314247 B = 7325.080554 C = 8730.407123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.126 3.874 3 N -0.619 5.619 4 C 0.095 3.905 5 C -0.167 4.167 6 C 0.701 3.299 7 O -0.608 6.608 8 N -0.674 5.674 9 C 0.160 3.840 10 C -0.118 4.118 11 C -0.109 4.109 12 C -0.117 4.117 13 C -0.132 4.132 14 C -0.115 4.115 15 S -0.169 6.169 16 C 0.097 3.903 17 H 0.027 0.973 18 C -0.129 4.129 19 C -0.532 4.532 20 H 0.061 0.939 21 C 0.027 3.973 22 N -0.910 5.910 23 Si 0.967 3.033 24 H -0.270 1.270 25 H -0.279 1.279 26 H -0.269 1.269 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.027 0.973 30 H 0.111 0.889 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.039 0.961 36 H 0.072 0.928 37 H 0.412 0.588 38 H 0.141 0.859 39 H 0.156 0.844 40 H 0.149 0.851 41 H 0.120 0.880 42 H 0.033 0.967 43 H 0.075 0.925 44 H 0.033 0.967 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.348 -18.491 -3.731 19.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.004 3.996 3 N -0.355 5.355 4 C -0.028 4.028 5 C -0.226 4.226 6 C 0.403 3.597 7 O -0.488 6.488 8 N -0.323 5.323 9 C 0.058 3.942 10 C -0.140 4.140 11 C -0.130 4.130 12 C -0.137 4.137 13 C -0.157 4.157 14 C -0.230 4.230 15 S 0.077 5.923 16 C -0.030 4.030 17 H 0.045 0.955 18 C -0.189 4.189 19 C -0.571 4.571 20 H 0.079 0.921 21 C -0.174 4.174 22 N -0.547 5.547 23 Si 0.792 3.208 24 H -0.195 1.195 25 H -0.205 1.205 26 H -0.194 1.194 27 H 0.082 0.918 28 H 0.105 0.895 29 H 0.047 0.953 30 H 0.129 0.871 31 H 0.088 0.912 32 H 0.130 0.870 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.059 0.941 36 H 0.091 0.909 37 H 0.251 0.749 38 H 0.159 0.841 39 H 0.174 0.826 40 H 0.167 0.833 41 H 0.138 0.862 42 H 0.052 0.948 43 H 0.094 0.906 44 H 0.053 0.947 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.980 -19.133 -4.198 19.688 hybrid contribution 0.122 1.769 0.380 1.814 sum 2.102 -17.364 -3.818 17.902 Atomic orbital electron populations 1.22115 0.95772 1.03030 1.01268 1.21499 0.94360 0.79783 1.03964 1.47382 1.68595 1.15495 1.04055 1.21799 0.98719 0.97113 0.85136 1.22196 0.94983 1.03336 1.02058 1.16029 0.77919 0.80831 0.84871 1.90841 1.60196 1.66730 1.31026 1.42705 1.68082 1.12746 1.08752 1.17138 1.01461 0.88560 0.87014 1.21340 1.00053 1.00936 0.91660 1.21349 0.99735 0.93863 0.98077 1.21316 0.99535 0.94907 0.97949 1.21316 1.01908 1.00136 0.92316 1.21775 1.06983 0.95596 0.98650 1.84658 1.85682 1.09234 1.12680 1.20839 0.97233 0.86765 0.98206 0.95473 1.21951 0.96893 1.02561 0.97470 1.20874 1.52660 0.91568 0.92031 0.92058 1.25673 0.93800 0.99027 0.98945 1.69959 1.48894 1.13984 1.21895 0.85462 0.79037 0.77374 0.78968 1.19455 1.20460 1.19407 0.91824 0.89529 0.95336 0.87083 0.91230 0.87047 0.91680 0.89549 0.94138 0.90934 0.74862 0.84148 0.82593 0.83346 0.86208 0.94769 0.90645 0.94737 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 10.24 71.98 0.74 -2.07 16 2 C 0.13 2.19 6.13 86.38 0.53 2.72 16 3 N -0.62 -13.75 2.47 -839.83 -2.08 -15.83 16 4 C 0.09 1.59 5.85 86.38 0.51 2.10 16 5 C -0.17 -2.38 10.24 71.98 0.74 -1.64 16 6 C 0.70 21.58 8.14 179.06 1.46 23.04 16 7 O -0.61 -22.05 13.25 -4.02 -0.05 -22.11 16 8 N -0.67 -21.53 4.88 -316.67 -1.54 -23.07 16 9 C 0.16 5.77 6.34 38.20 0.24 6.01 16 10 C -0.12 -3.92 8.71 22.37 0.19 -3.72 16 11 C -0.11 -3.13 10.04 22.29 0.22 -2.91 16 12 C -0.12 -3.60 10.04 22.27 0.22 -3.38 16 13 C -0.13 -5.05 8.26 22.39 0.18 -4.86 16 14 C -0.11 -4.54 6.11 22.70 0.14 -4.40 16 15 S -0.17 -7.23 20.06 -56.49 -1.13 -8.37 16 16 C 0.10 4.87 1.97 29.85 0.06 4.93 16 17 H 0.03 1.48 6.87 -2.39 -0.02 1.46 16 18 C -0.13 -6.25 8.64 71.98 0.62 -5.63 16 19 C -0.53 -28.52 8.58 25.60 0.22 -28.30 16 20 H 0.06 3.26 7.71 -2.91 -0.02 3.24 16 21 C 0.03 1.45 5.29 84.65 0.45 1.90 16 22 N -0.91 -49.80 11.30 21.45 0.24 -49.56 16 23 Si 0.97 41.69 29.54 68.60 2.03 43.72 16 24 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 25 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.09 1.09 8.14 -2.38 -0.02 1.08 16 29 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.11 1.16 8.07 -2.39 -0.02 1.14 16 31 H 0.07 1.44 7.42 -2.39 -0.02 1.42 16 32 H 0.11 1.30 8.07 -2.38 -0.02 1.28 16 33 H 0.06 1.31 6.44 -2.39 -0.02 1.29 16 34 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.41 12.21 5.73 -92.70 -0.53 11.68 16 38 H 0.14 4.69 6.08 -2.91 -0.02 4.68 16 39 H 0.16 3.33 8.06 -2.91 -0.02 3.30 16 40 H 0.15 3.67 8.06 -2.91 -0.02 3.64 16 41 H 0.12 4.99 4.65 -2.91 -0.01 4.97 16 42 H 0.03 1.51 6.05 -2.39 -0.01 1.50 16 43 H 0.08 3.96 5.97 -2.39 -0.01 3.95 16 44 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -64.61 371.88 4.45 -60.16 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: 0.47 Total: 31.28 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: 6.52 Total: -16.22 kcal Atomic # 7 Polarization: -85.08 SS G_CDS: -3.38 Total: -88.46 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.05 Total: -22.11 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Atomic # 16 Polarization: -7.23 SS G_CDS: -1.13 Total: -8.37 kcal Total: -64.61 4.45 -60.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109028091.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.222 kcal (2) G-P(sol) polarization free energy of solvation -64.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds